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Gene HTR2CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
41 supporting clones for gene HTR2C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
M81778   .a 1 to 2724 6 to 2728 exact tiling clone,   2723/2733
(99 %)
7 diff
(99.8 %id)
DR003480 fetal brain .a 301 to 688 10 to 396       387/396
(97 %)
6 diff
(98.5 %id)
DA190391 amygdala .b 1 to 593 7 to 599   tiling clone, capped   598/598
(100 %)
2 diff
(99.7 %id)
BP217946 caudate nucleus .b 49 to 635 1 to 589   tiling clone,   589/599
(98 %)
4 diff
(99.4 %id)
DC317996 amygdala .b 408 to 985 1 to 578   tiling clone,   578/578
(100 %)
1 diff
(99.9 %id)
NM_000868.2   .b 569 to 4737 583 to 4751 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4751/4751
(100 %)
0 diff
(100 %id)
U49516 brain .b 569 to 4737 583 to 4752 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4752/4752
(100 %)
3 diff
(100.0 %id)
BC095543 Unknown pool .b 714 to 2091 1 to 1378 exact     1378/1378
(100 %)
0 diff
(100 %id)
AF208053 brain .b 715 to 2091 1 to 1377 I156V N158S I160V     1377/1377
(100 %)
4 diff
(99.8 %id)
AF498983 brain .b 715 to 2091 1 to 1377 exact     1377/1377
(100 %)
0 diff
(100 %id)
CB565884 mixed .b 715 to 1270 1 to 556       556/930
(59 %)
3 diff
(99.7 %id)
CO957124 mixed .b 715 to 1063 1 to 349       349/684
(51 %)
1 diff
(99.9 %id)
CO957120 mixed .b 1470 to 2091 633 to 20       614/735
(83 %)
0 diff
(100 %id)
DA298294 hippocampus .b 2145 to 2728 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA182348 amygdala .b 2284 to 2843 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA269458 caudate nucleus .b 2333 to 2962 2 to 632   capped   631/631
(100 %)
1 diff
(99.9 %id)
AI970140 pooled germ cell tumors .b 2371 to 3174 802 to 1       802/804
(99 %)
13 diff
(98.4 %id)
BX505080   .b 2406 to 3176 1 to 771       771/771
(100 %)
1 diff
(99.9 %id)
BX118108 multiple sclerosis lesions .b 2497 to 3173 1 to 677   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 677/677
(100 %)
3 diff
(99.6 %id)
N50321 multiple sclerosis lesions .b 2526 to 2694 1 to 170       170/170
(100 %)
3 diff
(98.3 %id)
DA281331 corpus callosum .b 2832 to 3327 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
N47111 multiple sclerosis lesions .b 2873 to 3174 305 to 1       305/305
(100 %)
3 diff
(99.1 %id)
CD103423 Pooled-Skin .b 3085 to 3657 1 to 581       581/806
(72 %)
22 diff
(97.3 %id)
DB549926 hippocampus .b 4264 to 4735 1 to 472     Submitted on the opposite strand 472/474
(99 %)
6 diff
(98.8 %id)
DB538394 hippocampus .b 4307 to 4742 1 to 435     Submitted on the opposite strand 435/438
(99 %)
24 diff
(94.6 %id)
AW002513 pooled germ cell tumors .b 4332 to 4737 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
Z40928 brain, total brain .b 4463 to 4737 275 to 1       275/275
(100 %)
0 diff
(100 %id)
DA319566 hippocampus .c-u 1 to 524 2 to 525   tiling clone, capped   524/524
(100 %)
2 diff
(99.7 %id)
DA195082 amygdala .c-u 77 to 619 2 to 543   capped   542/550
(98 %)
2 diff
(99.7 %id)
BX648587 human esophagus tumor .c-u 214 to 4101 1 to 3888 R110G tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 3888/3888
(100 %)
5 diff
(99.9 %id)
CD657722 Embryonic Stem cells .c-u 341 to 1035 12 to 701   tiling clone,   690/801
(86 %)
10 diff
(98.8 %id)
AY114104   .c-u 496 to 664 16 to 183       168/183
(91 %)
6 diff
(96.8 %id)
AK295753 hippocampus .d 1 to 1632 7 to 1638 exact tiling clone,   1638/1638
(100 %)
1 diff
(100.0 %id)
AK308766 amygdala .d 408 to 1611 1 to 1204 exact     1204/1204
(100 %)
1 diff
(100.0 %id)
DA191127 amygdala .e-u 1 to 569 7 to 575 exact capped   574/575
(99 %)
2 diff
(99.7 %id)
DA327514 hippocampus .e-u 1 to 551 7 to 557 exact capped   556/556
(100 %)
1 diff
(99.9 %id)
DB481106 hippocampus .e-u 1 to 474 2 to 475 exact     475/475
(100 %)
6 diff
(98.8 %id)
DA407400 thalamus .e-u 1 to 545 2 to 546 exact tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
DB496512.
matches multiple genes
hypothalamus .e-u 194 to 685 494 to 3   tiling clone, Submitted on the opposite strand, also hits gene zodo 492/494
(99 %)
0 diff
(100 %id)
AI825491 pooled germ cell tumors .f-u 1 to 403 403 to 3 F2X K3Q D6T Q9K N10X ... tiling clone,   401/403
(99 %)
0 diff
(100 %id)
DA276667 corpus callosum Gene HTR2C, variant not shown       capped      
BC028688 Brain, hippocampus Gene HTR2C, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
BG704515 brain, hippocampus Gene HTR2C, variant not shown       available from MGC, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e-u, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI