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Gene HTR1DTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
33 supporting clones for gene HTR1D back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
M81589   .a 1 to 1200 1 to 1200 exact tiling clone,   1200/1200
(100 %)
0 diff
(100 %id)
BF688599 eye, normal pigmented retinal epithelium .b-u 1 to 675 1 to 670   tiling clone,   670/732
(91 %)
26 diff
(96.5 %id)
BC007720 Eye, normal, pigmented retinal epithelium .b-u 2 to 2835 1 to 2832 exact tiling clone, available from MGC, AAA   2832/2832
(100 %)
2 diff
(100.0 %id)
NM_000864.4   .b-u 2 to 2835 1 to 2834 exact RefSeq, AAA   2834/2834
(100 %)
0 diff
(100 %id)
TI_1948124009   .b-u 510 to 1303 134 to 933       800/1383
(57 %)
19 diff
(98.7 %id)
TI_1948124010   .b-u 510 to 1260 134 to 887       754/1482
(50 %)
52 diff
(96.5 %id)
TI_1948124521   .b-u 510 to 1436 131 to 1075       945/1392
(67 %)
31 diff
(97.8 %id)
TI_1948125051   .b-u 510 to 1525 130 to 1159       1030/1321
(77 %)
37 diff
(97.2 %id)
TI_1948125052   .b-u 510 to 1354 128 to 985       858/1486
(57 %)
25 diff
(98.4 %id)
TI_1948125053   .b-u 510 to 1559 110 to 1162       1053/1425
(73 %)
77 diff
(94.6 %id)
TI_1948125583   .b-u 510 to 1436 127 to 1071       945/1369
(69 %)
22 diff
(98.4 %id)
TI_1948125584   .b-u 510 to 1194 130 to 815       686/1457
(47 %)
18 diff
(98.8 %id)
TI_1948125585   .b-u 510 to 1338 125 to 962       838/1520
(55 %)
6 diff
(99.7 %id)
BT007027   .b-u 512 to 1645 1 to 1134 exact     1134/1134
(100 %)
1 diff
(100.0 %id)
CV026885 mixed .b-u 512 to 1173 1 to 662       662/662
(100 %)
1 diff
(99.9 %id)
AF498979   .b-u 512 to 1645 1 to 1134 exact     1134/1134
(100 %)
1 diff
(100.0 %id)
TI_1948124523   .b-u 512 to 1159 115 to 765       651/1358
(47 %)
22 diff
(98.4 %id)
TI_1948124011   .b-u 513 to 1122 132 to 749       618/1415
(43 %)
39 diff
(97.3 %id)
TI_1948125586   .b-u 699 to 1643 1070 to 123       948/1351
(70 %)
0 diff
(100 %id)
TI_1948125055   .b-u 701 to 1652 1072 to 118       955/1402
(68 %)
51 diff
(96.4 %id)
TI_1948125587   .b-u 702 to 1652 1070 to 120       951/1387
(68 %)
29 diff
(98.0 %id)
TI_1948125056   .b-u 800 to 1652 970 to 119       852/1432
(59 %)
32 diff
(97.8 %id)
TI_1948124013   .b-u 802 to 1652 969 to 120       850/1377
(61 %)
33 diff
(97.7 %id)
TI_1948125588   .b-u 863 to 1652 907 to 119       789/1391
(56 %)
26 diff
(98.2 %id)
TI_1948124012   .b-u 868 to 1652 912 to 118       795/1446
(54 %)
32 diff
(97.8 %id)
TI_1948125054   .b-u 953 to 1652 835 to 123       713/1473
(48 %)
28 diff
(98.1 %id)
TI_1948124525   .b-u 1053 to 1652 722 to 122       601/1453
(41 %)
23 diff
(98.5 %id)
BX281878 brain, glioblastoma (pooled) .b-u 1225 to 1728 1 to 505       505/506
(99 %)
3 diff
(99.5 %id)
BF196846 brain, glioblastoma (pooled) .b-u 1235 to 1738 505 to 1       505/505
(100 %)
3 diff
(99.5 %id)
AW051032 brain, glioblastoma (pooled) .b-u 1283 to 1738 455 to 1   tiling clone,   455/455
(100 %)
29 diff
(93.7 %id)
AW074055 2 pooled high-grade transitional celltumors, genitourinary tract .b-u 2423 to 2482 60 to 1       60/60
(100 %)
0 diff
(100 %id)
AA132509 colon, tumor .b-u 2500 to 2832 350 to 17   AAA Submitted on the opposite strand 334/334
(100 %)
2 diff
(99.5 %id)
TI_154029842   .c 1 to 567 681 to 115 K2* tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 567/885
(64 %)
33 diff
(96.3 %id)
? Gene Summary Gene on genome mRNA:.a, .b-u, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI