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Gene HTR1ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
85 supporting clones for gene HTR1A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA768028 brain HTR1A.a 1 to 554 2 to 555   tiling clone, capped   554/563
(98 %)
5 diff
(99.2 %id)
CO959564 mixed HTR1A.a 429 to 954 34 to 559   tiling clone,   526/738
(71 %)
21 diff
(97.2 %id)
NM_000524.2   HTR1A.a 430 to 1698 1 to 1269 exact RefSeq,   1269/1269
(100 %)
0 diff
(100 %id)
CO959567 mixed HTR1A.a 1095 to 1701 619 to 25   tiling clone,   595/772
(77 %)
0 diff
(100 %id)
DA501868 brain HTR1A.b-u 1 to 563 2 to 565   tiling clone, capped   564/564
(100 %)
2 diff
(99.7 %id)
DA773988 brain HTR1A.b-u 1 to 586 2 to 587   tiling clone, capped   586/586
(100 %)
1 diff
(99.9 %id)
DA223047 brain HTR1A.b-u 169 to 708 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA214818 brain HTR1A.b-u 175 to 711 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
CD608772   HTR1A.b-u 251 to 1010 1 to 760   tiling clone,   760/760
(100 %)
5 diff
(99.4 %id)
AK314187 hippocampus HTR1A.b-u 327 to 2009 1 to 1683 K418N     1683/1683
(100 %)
3 diff
(99.9 %id)
DA323925 hippocampus HTR1A.b-u 328 to 780 2 to 454   capped   453/453
(100 %)
1 diff
(99.8 %id)
CD608773   HTR1A.b-u 335 to 647 1 to 299       299/301
(99 %)
10 diff
(96.7 %id)
DA494237 brain HTR1A.b-u 356 to 910 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA319765 hippocampus HTR1A.b-u 376 to 936 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA798719 brain HTR1A.b-u 383 to 948 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DR000960 fetal brain HTR1A.b-u 395 to 994 9 to 608       600/608
(98 %)
6 diff
(99.1 %id)
DB503071 hypothalamus HTR1A.b-u 409 to 885 1 to 477       477/477
(100 %)
0 diff
(100 %id)
DA319392 hippocampus HTR1A.b-u 410 to 951 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
CD608771   HTR1A.b-u 412 to 1182 770 to 1       770/770
(100 %)
4 diff
(99.5 %id)
DB479790 hippocampus HTR1A.b-u 423 to 919 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
DA811014 brain HTR1A.b-u 457 to 1009 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA801931 brain HTR1A.b-u 493 to 955 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
AK291429 brain HTR1A.b-u 507 to 2104 1 to 1598 M211I     1598/1598
(100 %)
1 diff
(100.0 %id)
DA216018 brain HTR1A.b-u 508 to 978 2 to 472   capped   471/471
(100 %)
0 diff
(100 %id)
DA248014 brain HTR1A.b-u 508 to 1091 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA334977 hippocampus HTR1A.b-u 508 to 1080 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA801185 brain HTR1A.b-u 508 to 1060 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
CD608774   HTR1A.b-u 595 to 1183 597 to 4       594/597
(99 %)
0 diff
(100 %id)
TI_1971560025   HTR1A.b-u 640 to 1321 713 to 29       685/806
(84 %)
0 diff
(100 %id)
DA795396 brain HTR1A.b-u 647 to 1199 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BC136263 Testicle, PCR rescued clones HTR1A.b-u 651 to 2031 1 to 1381 exact tiling clone,   1381/1381
(100 %)
0 diff
(100 %id)
DA319718 hippocampus HTR1A.b-u 738 to 1314 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
AF498978 brain HTR1A.b-u 741 to 2009 1 to 1269 exact     1269/1269
(100 %)
0 diff
(100 %id)
BC069159 Synthetic constructs HTR1A.b-u 741 to 2009 1 to 1269 exact available from MGC,   1269/1269
(100 %)
0 diff
(100 %id)
DA313513 hippocampus HTR1A.b-u 748 to 1292 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
TI_1971553357   HTR1A.b-u 823 to 1035 19 to 231     Submitted on the opposite strand 213/231
(92 %)
6 diff
(97.5 %id)
TI_1971559173   HTR1A.b-u 856 to 2031 1254 to 61       1194/1276
(93 %)
0 diff
(100 %id)
TI_2016725853   HTR1A.b-u 871 to 1774 80 to 982       903/1207
(74 %)
39 diff
(96.8 %id)
DA320891 hippocampus HTR1A.b-u 874 to 1417 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA190750 amygdala HTR1A.b-u 922 to 1516 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
TI_1971555225   HTR1A.b-u 928 to 2031 1169 to 71       1099/1302
(84 %)
0 diff
(100 %id)
CD608775   HTR1A.b-u 989 to 1187 199 to 1       199/199
(100 %)
1 diff
(99.5 %id)
CD608776   HTR1A.b-u 990 to 1188 1 to 199       199/200
(99 %)
1 diff
(99.5 %id)
DA183284 amygdala HTR1A.b-u 1026 to 1572 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA195991 amygdala HTR1A.b-u 1050 to 1610 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA169686 amygdala HTR1A.b-u 1210 to 1795 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA196218 amygdala HTR1A.b-u 1255 to 1822 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB471151 hippocampus HTR1A.b-u 1276 to 1758 1 to 481       481/481
(100 %)
3 diff
(99.4 %id)
DA322595 hippocampus HTR1A.b-u 1299 to 1858 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA186144 amygdala HTR1A.b-u 1303 to 1847 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DA190372 amygdala HTR1A.b-u 1303 to 1872 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA196318 amygdala HTR1A.b-u 1303 to 1874 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA196475 amygdala HTR1A.b-u 1303 to 1861 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA226562 brain HTR1A.b-u 1303 to 1911 2 to 610   capped   609/609
(100 %)
1 diff
(99.9 %id)
DA499702 brain HTR1A.b-u 1303 to 1867 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA183121 amygdala HTR1A.b-u 1306 to 1861 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA231946 brain HTR1A.b-u 1306 to 1874 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA327843 hippocampus HTR1A.b-u 1306 to 1579 2 to 275   capped   274/274
(100 %)
0 diff
(100 %id)
DA337832 hippocampus HTR1A.b-u 1306 to 1894 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA510244 brain HTR1A.b-u 1306 to 1855 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
TI_1971559403   HTR1A.b-u 1338 to 1767 440 to 11       430/440
(97 %)
0 diff
(100 %id)
S64045   HTR1A.b-u 1345 to 1828 9 to 495       487/503
(96 %)
4 diff
(99.3 %id)
DA186911 amygdala HTR1A.b-u 1359 to 1904 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
TI_1971559399   HTR1A.b-u 1572 to 2031 599 to 140       460/599
(76 %)
0 diff
(100 %id)
DA160783 amygdala HTR1A.b-u 1624 to 2196 2 to 575   tiling clone, capped   574/574
(100 %)
2 diff
(99.7 %id)
DA176856 amygdala HTR1A.b-u 1645 to 2100 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
DA527925 brain HTR1A.b-u 1867 to 2412 2 to 546   tiling clone, capped   545/545
(100 %)
2 diff
(99.7 %id)
DC312957 amygdala HTR1A.c-u 1 to 558 1 to 558 S24P tiling clone, to resequence,   558/558
(100 %)
1 diff
(99.9 %id)
DB470447 hippocampus HTR1A.c-u 47 to 476 1 to 430   tiling clone,   430/430
(100 %)
1 diff
(99.8 %id)
F11541 brain, total brain HTR1A.c-u 469 to 778 1 to 309   tiling clone,   309/309
(100 %)
2 diff
(99.4 %id)
R13958 whole brain HTR1A.c-u 470 to 892 1 to 424   tiling clone,   424/431
(98 %)
5 diff
(98.9 %id)
DC425822 amygdala HTR1A.c-u 1561 to 2103 543 to 1   tiling clone, to resequence,   543/543
(100 %)
1 diff
(99.9 %id)
D51371   HTR1A.c-u 1584 to 2020 1 to 436       436/436
(100 %)
3 diff
(99.4 %id)
BX099692 whole brain HTR1A.c-u 1638 to 2103 481 to 15   AAA   467/467
(100 %)
3 diff
(99.4 %id)
DB548520 hippocampus HTR1A.c-u 1648 to 2107 1 to 460     Submitted on the opposite strand 460/465
(98 %)
3 diff
(99.4 %id)
DB574279 hypothalamus HTR1A.c-u 1648 to 2101 1 to 454   tiling clone, Submitted on the opposite strand 454/456
(99 %)
1 diff
(99.8 %id)
DB539872 hippocampus HTR1A.c-u 1652 to 2101 1 to 455     Submitted on the opposite strand 455/457
(99 %)
12 diff
(97.4 %id)
DB538594 hippocampus HTR1A.c-u 1667 to 2101 1 to 435     Submitted on the opposite strand 435/437
(99 %)
1 diff
(99.8 %id)
R40018 whole brain HTR1A.c-u 1740 to 2107 391 to 5   tiling clone,   387/413
(93 %)
0 diff
(100 %id)
D51031   HTR1A.c-u 1785 to 2103 315 to 1       315/315
(100 %)
5 diff
(98.5 %id)
Z40191 brain, total brain HTR1A.c-u 1791 to 2103 313 to 1       313/313
(100 %)
1 diff
(99.7 %id)
F09202 brain, total brain HTR1A.c-u 1821 to 2103 283 to 1       283/283
(100 %)
1 diff
(99.7 %id)
T03563   HTR1A.c-u 1840 to 2103 264 to 1       264/264
(100 %)
4 diff
(98.5 %id)
BG219277   HTR1A.c-u 1966 to 2089 137 to 14     Submitted on the opposite strand 124/137
(90 %)
0 diff
(100 %id)
AK311460 brain Gene HTR1A, variant not shown         Suspected internal deletion, this clone was ignored    
DA174764 amygdala Gene HTR1A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB303095 amygdala Gene HTR1A, variant not shown         Suspected internal deletion, this clone was ignored    
DA184878 amygdala Gene HTR1A, variant not shown       capped Suspected internal deletion, this clone was ignored    
F04159 brain, total brain Gene HTR1A, variant not shown         This clone was ignored    
Z45262 brain, total brain Gene HTR1A, variant not shown         This clone was ignored    
DC374878 brain Gene HTR1A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI