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Gene HSPH1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
493 representative clones for gene HSPH1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK302832 testis .a 1 to 2289 5 to 2177   tiling clone, Suspected internal deletion 2177/2177
(100 %)
3 diff
(99.9 %id)
DC402896 testis .a 1 to 666 5 to 555     Suspected internal deletion 555/555
(100 %)
0 diff
(100 %id)
AL520324 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 1563 to 2579 1 to 1014   tiling clone,   1014/1018
(99 %)
7 diff
(99.4 %id)
BG165839 hypernephroma, cell line, Kidney .a 2537 to 3245 1 to 698   tiling clone,   698/699
(99 %)
13 diff
(98.2 %id)
BG680243 skin, squamous cell carcinoma .a 2582 to 3283 1 to 703   tiling clone,   703/703
(100 %)
1 diff
(99.9 %id)
AL520323 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 2590 to 3495 907 to 1       907/907
(100 %)
13 diff
(98.6 %id)
AI337175 pooled germ cell tumors .a 2708 to 3518 809 to 1       809/819
(98 %)
18 diff
(97.9 %id)
TI_149304674   .a 2737 to 3518 859 to 86   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 774/944
(81 %)
20 diff
(97.9 %id)
AU133342   .a 2738 to 3533 2 to 798   capped   797/797
(100 %)
4 diff
(99.5 %id)
BM971288 lung, Primary Lung Epithelial Cells .a 2846 to 3518 691 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 673/673
(100 %)
3 diff
(99.6 %id)
BE672159 pooled germ cell tumors .a 2870 to 3518 647 to 1       647/654
(98 %)
10 diff
(98.5 %id)
TI_149281592   .a 2872 to 3518 733 to 89   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 645/803
(80 %)
10 diff
(98.8 %id)
CR748291   .a 2915 to 3495 1 to 581       581/581
(100 %)
0 diff
(100 %id)
AA417317   .a 2915 to 3330 1 to 416   fully sequenced,   416/416
(100 %)
1 diff
(99.8 %id)
BM983480 lung, Primary Lung Epithelial Cells .a 2939 to 3518 598 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 580/580
(100 %)
2 diff
(99.7 %id)
BE739629 hypernephroma, Kidney .a 2945 to 3460 528 to 13       516/528
(97 %)
6 diff
(98.9 %id)
AI654608 pooled germ cell tumors .a 3021 to 3518 498 to 1       498/498
(100 %)
0 diff
(100 %id)
BE246103 leukopheresis .a 3022 to 3517 497 to 2       496/497
(99 %)
0 diff
(100 %id)
AI378269   .a 3025 to 3521 497 to 1       497/497
(100 %)
0 diff
(100 %id)
BE328619 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 3026 to 3521 496 to 1       496/496
(100 %)
0 diff
(100 %id)
AI920808 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3027 to 3518 492 to 1       492/492
(100 %)
0 diff
(100 %id)
AI753470 bone marrow stroma .a 3049 to 3518 488 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 470/470
(100 %)
0 diff
(100 %id)
TI_149277122   .a 3055 to 3518 537 to 75   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 463/978
(47 %)
4 diff
(99.6 %id)
DB543557 hippocampus .a 3058 to 3518 1 to 461     Submitted on the opposite strand 461/461
(100 %)
2 diff
(99.6 %id)
AW117974 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 3076 to 3512 448 to 12   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 437/437
(100 %)
0 diff
(100 %id)
F22410 pectoral muscle (after mastectomy) .a 3077 to 3386 1 to 310       310/310
(100 %)
3 diff
(99.1 %id)
AA912023 Dorsal root ganglion, peripheral nervous system .a 3096 to 3520 425 to 1       425/425
(100 %)
0 diff
(100 %id)
BG674798 skin .a 3105 to 3894 1 to 790   tiling clone,   790/791
(99 %)
6 diff
(99.3 %id)
TI_149283367   .a 3105 to 3518 65 to 479   AAA Submitted on the opposite strand 415/479
(86 %)
6 diff
(98.8 %id)
BM312391 Pancreas, Purified pancreatic islet .a 3112 to 3517 419 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 406/406
(100 %)
0 diff
(100 %id)
AI250881 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3155 to 3518 381 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 364/364
(100 %)
0 diff
(100 %id)
AI262020 adenocarcinoma, colon .a 3159 to 3518 360 to 1       360/360
(100 %)
0 diff
(100 %id)
CB107902 Liver .a 3163 to 3518 1 to 356   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 356/356
(100 %)
0 diff
(100 %id)
AI050716   .a 3168 to 3513 349 to 4       346/349
(99 %)
0 diff
(100 %id)
BQ029658 lung, Metastatic Chondrosarcoma .a 3184 to 3518 353 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 335/335
(100 %)
0 diff
(100 %id)
AA582157 germ cell tumor .a 3194 to 3518 340 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 325/325
(100 %)
0 diff
(100 %id)
FN070755 breast carcinoma .a 3210 to 3317 1 to 105       105/105
(100 %)
4 diff
(96.2 %id)
EH337490   .a 3238 to 3327 1 to 90       90/91
(98 %)
1 diff
(99.0 %id)
AA810686 germinal center B cell .a 3260 to 3741 492 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 482/482
(100 %)
0 diff
(100 %id)
AA417255   .a 3317 to 3521 205 to 1   fully sequenced,   205/205
(100 %)
0 diff
(100 %id)
FN171875 breast carcinoma .a 3330 to 3430 97 to 1     Submitted on the opposite strand 97/97
(100 %)
5 diff
(94.9 %id)
FN048324 breast carcinoma .a 3435 to 3519 1 to 85       85/87
(97 %)
1 diff
(98.9 %id)
AW059721   .a 3448 to 3512 1 to 65       65/65
(100 %)
0 diff
(100 %id)
FN163614 breast carcinoma .a 3451 to 3521 1 to 70       70/72
(97 %)
2 diff
(97.3 %id)
AA773435 lung, lung carcinoma .a 3453 to 3511 59 to 1       59/59
(100 %)
0 diff
(100 %id)
FN060879 breast carcinoma .a 3528 to 3641 1 to 115       115/115
(100 %)
2 diff
(98.3 %id)
CR611122 fetal brain .a 3670 to 5097 1 to 1428   tiling clone,   1428/1428
(100 %)
0 diff
(100 %id)
AI978606 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4305 to 4864 585 to 26   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 560/560
(100 %)
0 diff
(100 %id)
CD677760 eye, Trabecular meshwork .a 4429 to 4801 1 to 373   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 373/373
(100 %)
0 diff
(100 %id)
AU154699   .a 4541 to 5110 569 to 1       569/573
(99 %)
7 diff
(98.8 %id)
FN057257 breast carcinoma .a 4596 to 4709 1 to 116       116/116
(100 %)
3 diff
(97.5 %id)
FN080430 breast carcinoma .a 4596 to 4709 1 to 111       111/111
(100 %)
3 diff
(97.3 %id)
FN149061 breast carcinoma .a 4599 to 4684 90 to 1     Submitted on the opposite strand 90/93
(96 %)
5 diff
(94.7 %id)
AI683598 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4654 to 5123 470 to 1   tiling clone,   470/470
(100 %)
0 diff
(100 %id)
AW241173 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .a 4707 to 5112 406 to 1       406/406
(100 %)
0 diff
(100 %id)
AB003333   .b 1 to 3448 1 to 3448 exact tiling clone,   3448/3448
(100 %)
4 diff
(99.9 %id)
AI758907 Kidney .b 1623 to 2059 441 to 5       437/441
(99 %)
0 diff
(100 %id)
DC396332 testis .c 1 to 592 5 to 596   tiling clone,   596/596
(100 %)
6 diff
(99.0 %id)
AK302430 testis .c 1 to 3273 2 to 3274 exact tiling clone,   3274/3274
(100 %)
2 diff
(100.0 %id)
DC400200 testis .c 1 to 562 2 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DC324466 brain .c 6 to 397 1 to 392       392/392
(100 %)
1 diff
(99.8 %id)
DA226278 brain .c 21 to 487 2 to 468   capped   467/467
(100 %)
1 diff
(99.8 %id)
DB066151 testis .c 22 to 553 2 to 534   capped   533/533
(100 %)
3 diff
(99.5 %id)
DA416974 thalamus .c 23 to 489 2 to 468   capped   467/467
(100 %)
1 diff
(99.8 %id)
BX648125 human testis .c 23 to 3566 1 to 3544 V486A tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 3544/3544
(100 %)
2 diff
(100.0 %id)
DB073865 testis .c 23 to 561 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
BG718319 testis .c 29 to 818 1 to 794       793/798
(99 %)
23 diff
(97.2 %id)
DA318759 hippocampus .c 30 to 489 2 to 462   capped   461/461
(100 %)
1 diff
(99.8 %id)
DB064103 testis .c 30 to 577 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB084153 testis .c 30 to 588 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
DA405886 thalamus .c 33 to 576 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB094693 testis .c 33 to 582 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AL705133 human skeletal muscle .c 35 to 642 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
AL705523 human skeletal muscle .c 36 to 589 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DB098410 testis .c 37 to 618 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AL044212 testis .c 41 to 586 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
DB200853 trachea .c 336 to 936 2 to 603   capped   602/602
(100 %)
2 diff
(99.7 %id)
DA114580 cerebellum .c 339 to 925 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DB066536 testis .c 339 to 872 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
DB047805 testis .c 350 to 909 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA000724   .c 359 to 874 2 to 517   capped   516/516
(100 %)
3 diff
(99.5 %id)
DA163127 amygdala .c 359 to 918 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA310133 hippocampus .c 359 to 957 2 to 599   capped   598/598
(100 %)
3 diff
(99.5 %id)
AV718076 hypothalamus .c 359 to 1118 1 to 757       757/757
(100 %)
11 diff
(98.6 %id)
CA390632 eye, RPE/choroid .c 366 to 909 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DA703736   .c 368 to 917 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA348880 substantia nigra .c 376 to 951 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA395059 thalamus .c 376 to 962 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
BX482426   .c 376 to 788 1 to 413       413/413
(100 %)
1 diff
(99.8 %id)
DA797671 brain .c 376 to 943 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB081948 testis .c 376 to 924 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB092369 testis .c 376 to 920 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DB099935 testis .c 379 to 963 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
BM474963 duodenal adenocarcinoma, cell line, small intestine .c 382 to 1204 1 to 834       834/1007
(82 %)
16 diff
(98.5 %id)
BU156820 leiomyosarcoma, uterus .c 442 to 1314 1 to 875       875/875
(100 %)
6 diff
(99.4 %id)
DB080580 testis .c 446 to 1025 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
BM479926 embryonal carcinoma, cell line, testis .c 462 to 1476 9 to 1037       1028/1040
(98 %)
41 diff
(96.1 %id)
BE898035 melanotic melanoma, skin .c 488 to 1209 1 to 726       726/976
(74 %)
21 diff
(97.9 %id)
DA226916 brain .c 509 to 1074 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BQ230835 epithelioid carcinoma, Pancreas .c 603 to 1340 1 to 743       743/942
(78 %)
15 diff
(98.5 %id)
BE867716 adenocarcinoma, colon .c 616 to 1309 1 to 688       688/917
(75 %)
12 diff
(98.7 %id)
BE883312 leiomyosarcoma, uterus .c 620 to 1378 1 to 763       763/789
(96 %)
16 diff
(98.0 %id)
BU162116 eye, retinoblastoma .c 624 to 1484 1 to 874       872/883
(98 %)
21 diff
(97.7 %id)
TI_59392727   .c 624 to 1384 82 to 849       766/860
(89 %)
24 diff
(97.3 %id)
BM014668 breast, mammary adenocarcinoma, cell line .c 625 to 1384 1 to 767       765/859
(89 %)
24 diff
(97.3 %id)
BP233297 muscle .c 634 to 1205 1 to 572       572/581
(98 %)
1 diff
(99.9 %id)
DA438740 tongue, tumor tissue .c 647 to 1229 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BX502933 Liver .c 683 to 1240 1 to 558       558/558
(100 %)
5 diff
(99.2 %id)
CN406509 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 684 to 1327 9 to 652       644/652
(98 %)
7 diff
(99.0 %id)
DA495594 brain .c 719 to 1193 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
BM803911 leiomyosarcoma, uterus .c 720 to 1674 37 to 1003       967/1071
(90 %)
38 diff
(96.5 %id)
CN406507 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 733 to 1386 1 to 654       654/654
(100 %)
0 diff
(100 %id)
AU128016   .c 767 to 1331 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB205785 trachea .c 796 to 1367 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BP355372   .c 797 to 1377 1 to 581       581/581
(100 %)
0 diff
(100 %id)
CB270546 adipose .c 828 to 1290 7 to 468       462/468
(98 %)
8 diff
(98.3 %id)
BM456425 lymph, lymphoma, cell line .c 873 to 1678 1 to 809       809/873
(92 %)
10 diff
(98.9 %id)
BQ310861 breast_normal .c 921 to 1436 1 to 515       515/524
(98 %)
3 diff
(99.5 %id)
BG314765   .c 993 to 1224 1 to 232       232/232
(100 %)
0 diff
(100 %id)
CN406501 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1043 to 1791 1 to 748       748/748
(100 %)
3 diff
(99.6 %id)
DA283950 corpus callosum .c 1049 to 1617 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB018595 esophageal, tumor tissue .c 1050 to 1607 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA527597 brain .c 1051 to 1606 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BU177152 melanotic melanoma, skin .c 1060 to 1887 1 to 831       831/898
(92 %)
16 diff
(98.3 %id)
BP221745 colon .c 1074 to 1628 1 to 555       555/555
(100 %)
5 diff
(99.1 %id)
DA544387   .c 1078 to 1649 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
AL042714 testis .c 1103 to 1842 1 to 745       745/750
(99 %)
8 diff
(99.0 %id)
CN406512 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1123 to 1715 1 to 593       593/593
(100 %)
0 diff
(100 %id)
DA198802 brain .c 1127 to 1689 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
CA397839 eye, RPE/choroid .c 1163 to 1740 1 to 578       578/578
(100 %)
0 diff
(100 %id)
AI633338 pooled germ cell tumors .c 1203 to 1669 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AI656127 pooled germ cell tumors .c 1216 to 1673 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
AI203278 pooled germ cell tumors .c 1217 to 1669 453 to 1       453/453
(100 %)
2 diff
(99.6 %id)
DA520632 brain .c 1249 to 1810 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA551805   .c 1251 to 1765 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
BG179356 adenocarcinoma, cell line, Prostate .c 1260 to 2065 1 to 799       803/992
(80 %)
28 diff
(97.2 %id)
AA580845 bulk germ cell seminoma .c 1272 to 1689 1 to 418       418/418
(100 %)
0 diff
(100 %id)
TI_154153494   .c 1282 to 1902 80 to 699       620/621
(99 %)
6 diff
(99.1 %id)
DA175039 amygdala .c 1406 to 1963 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA273085 caudate nucleus .c 1459 to 2028 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BJ990637 hepatoblastoma .c 1460 to 2042 1 to 583       583/583
(100 %)
0 diff
(100 %id)
AW630933 2 pooled high-grade transitional celltumors, genitourinary tract .c 1487 to 1967 1 to 481       481/481
(100 %)
0 diff
(100 %id)
AW631423 2 pooled high-grade transitional celltumors, genitourinary tract .c 1533 to 2033 1 to 501       501/501
(100 %)
4 diff
(99.3 %id)
BU167787 leiomyosarcoma, uterus .c 1536 to 2402 1 to 869       869/870
(99 %)
3 diff
(99.7 %id)
BF791809 adrenal cortex carcinoma, cell line, adrenal gland .c 1709 to 2453 1 to 742       742/1027
(72 %)
12 diff
(98.9 %id)
AI702970 carcinoid, lung .c 1725 to 2184 460 to 1       460/460
(100 %)
2 diff
(99.6 %id)
BJ995488 hepatoblastoma .c 1731 to 2133 1 to 403       403/403
(100 %)
0 diff
(100 %id)
CD671804 eye, Iris .c 1761 to 2333 1 to 573     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 573/573
(100 %)
0 diff
(100 %id)
BQ722673 sympathetic trunk .c 1843 to 2764 1 to 921       921/922
(99 %)
18 diff
(98.1 %id)
CU446682 epidermis .c 1884 to 2538 664 to 10     Submitted on the opposite strand 655/688
(95 %)
0 diff
(100 %id)
BE693976 breast .c 1957 to 2083 127 to 1       127/127
(100 %)
0 diff
(100 %id)
BY996974   .c 1989 to 2500 10 to 521       512/521
(98 %)
8 diff
(98.5 %id)
BP289686 lung .c 2023 to 2605 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
CN406516 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 2059 to 2756 1 to 698       698/698
(100 %)
0 diff
(100 %id)
AW820299 stomach .c 2110 to 2639 532 to 1       532/532
(100 %)
3 diff
(99.5 %id)
AW820232 stomach .c 2118 to 2474 1 to 357       357/357
(100 %)
0 diff
(100 %id)
AW820234 stomach .c 2118 to 2520 1 to 405       405/405
(100 %)
2 diff
(99.6 %id)
AW859943 colon .c 2118 to 2522 1 to 405       405/405
(100 %)
1 diff
(99.8 %id)
AW859988 colon .c 2118 to 2522 1 to 405       405/405
(100 %)
1 diff
(99.8 %id)
BF334498 colon .c 2118 to 2501 1 to 384       384/384
(100 %)
0 diff
(100 %id)
BF771389 epid_tumor .c 2118 to 2416 1 to 299       299/299
(100 %)
0 diff
(100 %id)
BG008534 placenta_normal .c 2118 to 2329 1 to 212       212/212
(100 %)
0 diff
(100 %id)
BG010046 placenta_normal .c 2118 to 2329 1 to 212       212/212
(100 %)
0 diff
(100 %id)
BQ316999 colon .c 2118 to 2501 1 to 384       384/384
(100 %)
0 diff
(100 %id)
TI_149280235   .c 2141 to 3006 944 to 84   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 861/1121
(76 %)
21 diff
(98.2 %id)
AU126851   .c 2186 to 2795 2 to 613   capped   612/612
(100 %)
3 diff
(99.6 %id)
AI658961 Prostate .c 2193 to 3005 822 to 10       813/822
(98 %)
7 diff
(99.2 %id)
BQ364023 stomach .c 2203 to 2379 177 to 1       177/177
(100 %)
0 diff
(100 %id)
TI_159714688   .c 2216 to 2928 793 to 85   AAA   709/938
(75 %)
8 diff
(99.2 %id)
FN061315 breast carcinoma .c 2238 to 2333 96 to 1     Submitted on the opposite strand 96/96
(100 %)
0 diff
(100 %id)
TI_149311006   .c 2240 to 2925 771 to 85   AAA   687/907
(75 %)
5 diff
(99.5 %id)
DB167557 kidney, tumor tissue .c 2243 to 2802 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BU192443 embryonal carcinoma, cell line, testis .c 2253 to 3157 1 to 907       907/908
(99 %)
6 diff
(99.4 %id)
AW628153 2 pooled high-grade transitional celltumors, genitourinary tract .c 2270 to 2654 385 to 1       385/385
(100 %)
0 diff
(100 %id)
TI_149307767   .c 2271 to 3006 821 to 88   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 734/964
(76 %)
17 diff
(98.3 %id)
BG284876 adenocarcinoma, cell line, Prostate .c 2305 to 3053 1 to 748       748/748
(100 %)
7 diff
(99.1 %id)
AA953645 Kidney, kidney tumor .c 2309 to 2637 329 to 1       329/329
(100 %)
0 diff
(100 %id)
CN478671 Human Lung Epithelial cells, lung .c 2315 to 2928 632 to 19   AAA   614/614
(100 %)
0 diff
(100 %id)
BU689167 lung .c 2316 to 2925 626 to 17   AAA   610/610
(100 %)
2 diff
(99.7 %id)
BG681493 skin, squamous cell carcinoma .c 2338 to 3138 1 to 812       812/864
(93 %)
24 diff
(97.3 %id)
AV722836 hypothalamus .c 2339 to 3007 1 to 668       668/673
(99 %)
10 diff
(98.6 %id)
BM969894 lung, Primary Lung Epithelial Cells .c 2346 to 3006 678 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 660/660
(100 %)
2 diff
(99.7 %id)
TI_149307173   .c 2351 to 3006 747 to 91   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 657/958
(68 %)
12 diff
(98.8 %id)
BE891235 melanotic melanoma, skin .c 2354 to 3123 1 to 767       767/928
(82 %)
21 diff
(97.8 %id)
DC426754 testis .c 2376 to 2927 552 to 1       552/552
(100 %)
0 diff
(100 %id)
AW571648 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2381 to 2943 563 to 1       563/568
(99 %)
5 diff
(99.2 %id)
BU632385 cell lines, Chondrosarcoma .c 2387 to 3006 637 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 619/620
(99 %)
1 diff
(99.9 %id)
BY993770   .c 2413 to 3122 9 to 718       710/718
(98 %)
6 diff
(99.2 %id)
BM979082 lung, Primary Lung Epithelial Cells .c 2416 to 3006 608 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 592/592
(100 %)
5 diff
(99.2 %id)
CD640453 pooled .c 2428 to 3096 1 to 666       666/721
(92 %)
11 diff
(98.5 %id)
BM979486 lung, Primary Lung Epithelial Cells .c 2470 to 3006 555 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 537/537
(100 %)
2 diff
(99.7 %id)
BG532824 embryonal carcinoma, testis .c 2507 to 3349 1 to 847       847/874
(96 %)
35 diff
(96.0 %id)
BG431448 Kidney .c 2519 to 3197 1 to 669       669/671
(99 %)
10 diff
(98.6 %id)
DB474724 hippocampus .c 2554 to 3062 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BG482892 lung .c 2576 to 3348 1 to 783       783/783
(100 %)
28 diff
(96.5 %id)
BM783955 Ascites, stomach .c 2590 to 3263 1 to 675       675/675
(100 %)
1 diff
(99.9 %id)
AW771160 colon, juvenile granulosa tumor .c 2607 to 3225 621 to 3       619/621
(99 %)
3 diff
(99.6 %id)
CB999661 Pooled-Skin .c 2615 to 3329 1 to 716       716/717
(99 %)
7 diff
(99.1 %id)
TI_154002121   .c 2645 to 3221 687 to 111   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 577/577
(100 %)
3 diff
(99.5 %id)
BG190219   .c 2666 to 3464 1 to 795       795/798
(99 %)
17 diff
(97.9 %id)
BG205435   .c 2666 to 3445 1 to 768       768/806
(95 %)
35 diff
(95.7 %id)
CA433222 mixed .c 2669 to 3221 571 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 553/556
(99 %)
2 diff
(99.7 %id)
BG403391 bladder, transitional cell papilloma, cell line .c 2679 to 3425 1 to 741       741/741
(100 %)
7 diff
(99.1 %id)
DB208043 trachea .c 2679 to 3194 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
AA136424 lung, lung carcinoma .c 2688 to 3074 1 to 387       387/387
(100 %)
2 diff
(99.5 %id)
BG532889 embryonal carcinoma, testis .c 2691 to 3444 1 to 759       759/759
(100 %)
14 diff
(98.2 %id)
TI_149286494   .c 2705 to 3566 942 to 89   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 854/1153
(74 %)
33 diff
(97.2 %id)
AI582484 adenocarcinoma, Pancreas .c 2706 to 3221 518 to 4       515/518
(99 %)
0 diff
(100 %id)
BE177948 head_neck .c 2709 to 3388 1 to 676       676/700
(96 %)
10 diff
(98.6 %id)
BM822834 stomach .c 2722 to 3074 1 to 354       354/354
(100 %)
3 diff
(99.2 %id)
BU954133 mixed (pool of 40 RNAs) .c 2723 to 3442 1 to 711       711/958
(74 %)
26 diff
(97.3 %id)
AV717790   .c 2729 to 3430 1 to 699       699/706
(99 %)
14 diff
(98.1 %id)
BF791636 adrenal cortex carcinoma, cell line, adrenal gland .c 2738 to 3463 1 to 730       730/859
(84 %)
9 diff
(99.0 %id)
BF791847 adrenal cortex carcinoma, cell line, adrenal gland .c 2738 to 3548 1 to 820       820/862
(95 %)
22 diff
(97.5 %id)
CN406520 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 2743 to 3469 8 to 734       727/734
(99 %)
6 diff
(99.2 %id)
AI288972 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2751 to 3221 475 to 5       471/475
(99 %)
0 diff
(100 %id)
TI_149290149   .c 2757 to 3566 872 to 70   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 803/804
(99 %)
18 diff
(97.8 %id)
BE178276 head_neck .c 2760 to 3501 738 to 8     Submitted on the opposite strand 731/752
(97 %)
0 diff
(100 %id)
DR422689 eye, Pterygium .c 2763 to 3163 1 to 401       401/401
(100 %)
1 diff
(99.8 %id)
Z20100   .c 2766 to 3028 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
CN406514 embryonic stem cells, DMSO-treated H9 cellline .c 2775 to 3383 1 to 609       609/609
(100 %)
0 diff
(100 %id)
CD653911 Embryonic Stem cells .c 2782 to 3491 710 to 1     Submitted on the opposite strand 710/711
(99 %)
2 diff
(99.8 %id)
DB513039 testis .c 2786 to 3230 1 to 443     Submitted on the opposite strand 443/443
(100 %)
3 diff
(99.4 %id)
DB509322 testis .c 2809 to 3230 1 to 421     Submitted on the opposite strand 421/421
(100 %)
4 diff
(99.1 %id)
CA313924 Human Lung Epithelial cells, lung .c 2828 to 3566 756 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 738/738
(100 %)
1 diff
(99.9 %id)
TI_149284230   .c 2835 to 3566 812 to 92   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 721/785
(91 %)
14 diff
(98.3 %id)
CV571770 cornea, eye .c 2839 to 3427 1 to 589       589/589
(100 %)
0 diff
(100 %id)
CK822164 Pancreas, Purified pancreatic islet .c 2841 to 3382 1 to 542     Submitted on the opposite strand 542/542
(100 %)
0 diff
(100 %id)
BU630846 cell lines, Chondrosarcoma .c 2845 to 3566 740 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 722/722
(100 %)
1 diff
(99.9 %id)
T34627 blood, white blood cells .c 2848 to 3006 159 to 1       159/159
(100 %)
0 diff
(100 %id)
BM973263 lung .c 2848 to 3566 736 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 718/719
(99 %)
2 diff
(99.8 %id)
BQ006975 Chondrosarcoma, Left Pelvis .c 2851 to 3560 728 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 710/710
(100 %)
0 diff
(100 %id)
FN049986 breast carcinoma .c 2855 to 2968 1 to 114       114/114
(100 %)
0 diff
(100 %id)
AA278231 germinal center B cell .c 2864 to 3323 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
TI_149277711   .c 2894 to 3566 757 to 85   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 673/673
(100 %)
3 diff
(99.6 %id)
CA421904 Bone, Enchondroma cell line .c 2895 to 3566 690 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 672/672
(100 %)
0 diff
(100 %id)
BU677892 lung .c 2924 to 3566 661 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 643/643
(100 %)
0 diff
(100 %id)
AW837156 leiomios .c 2940 to 3372 434 to 1       434/434
(100 %)
1 diff
(99.8 %id)
BM971989 lung .c 2954 to 3566 631 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 613/613
(100 %)
0 diff
(100 %id)
DA645610   .c 2963 to 3325 2 to 364   capped   363/363
(100 %)
0 diff
(100 %id)
AU150358   .c 2988 to 3566 576 to 1       576/576
(100 %)
7 diff
(98.8 %id)
CA946736 Pancreas, Purified pancreatic islet .c 2993 to 3568 576 to 1       576/576
(100 %)
0 diff
(100 %id)
AU309719 neuroblastoma .c 3006 to 3566 594 to 34   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 561/561
(100 %)
0 diff
(100 %id)
BU680410 lung, Primary Lung Epithelial Cells .c 3007 to 3566 578 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 560/560
(100 %)
0 diff
(100 %id)
BJ990638 hepatoblastoma .c 3011 to 3550 540 to 1       540/540
(100 %)
0 diff
(100 %id)
CD671803 eye, Iris .c 3015 to 3566 571 to 20   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 552/552
(100 %)
2 diff
(99.7 %id)
T34783 brain .c 3021 to 3242 1 to 222       222/222
(100 %)
0 diff
(100 %id)
BF002911 Prostate .c 3057 to 3560 504 to 1       504/504
(100 %)
0 diff
(100 %id)
AW612983 colon, moderately-differentiated adenocarcinoma .c 3064 to 3568 505 to 1       505/505
(100 %)
0 diff
(100 %id)
AW612980 colon, moderately-differentiated adenocarcinoma .c 3064 to 3568 505 to 1       505/505
(100 %)
0 diff
(100 %id)
T36072 testis .c 3067 to 3379 1 to 313       313/313
(100 %)
0 diff
(100 %id)
AW627645 2 pooled high-grade transitional celltumors, genitourinary tract .c 3168 to 3567 400 to 1       400/401
(99 %)
0 diff
(100 %id)
AU149630   .c 3183 to 3566 382 to 1       382/382
(100 %)
2 diff
(99.5 %id)
DB069199 testis .d 1 to 497 2 to 498   tiling clone, capped   497/497
(100 %)
0 diff
(100 %id)
DB077644 testis .d 368 to 941 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA419253 cord Blood .d 374 to 914 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA289269 hippocampus .d 376 to 926 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA438042 tongue, tumor tissue .d 377 to 930 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA186659 amygdala .d 388 to 942 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CN406517 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 397 to 1063 7 to 673       667/673
(99 %)
6 diff
(99.2 %id)
DA689376   .d 407 to 951 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
NM_006644.2   .d 408 to 4072 1 to 3665   RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 3665/3665
(100 %)
0 diff
(100 %id)
DA025725   .d 411 to 984 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA709874   .d 414 to 954 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA800471 brain .d 414 to 773 2 to 361   capped   360/360
(100 %)
0 diff
(100 %id)
DA230249 brain .d 423 to 979 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA412632 thalamus .d 423 to 956 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA499452 brain .d 423 to 961 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB062474 testis .d 423 to 957 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB089398 testis .d 423 to 979 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA217933 brain .d 432 to 809 2 to 379   capped   378/378
(100 %)
0 diff
(100 %id)
CN406510 embryonic stem cells, DMSO-treated H9 cellline .d 432 to 1067 1 to 636       636/636
(100 %)
1 diff
(99.9 %id)
BP202109 amygdala .d 439 to 1020 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP236448 coronary artery .d 439 to 1025 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DA002950   .d 440 to 1002 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA026242   .d 440 to 990 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA100322 cerebellum .d 440 to 982 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA180003 amygdala .d 440 to 1006 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA220194 brain .d 440 to 989 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA393759 thalamus .d 440 to 1023 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA443777 tongue, tumor tissue .d 440 to 1008 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA581289 lung .d 440 to 934 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
DA661115   .d 440 to 862 2 to 424   capped   423/423
(100 %)
0 diff
(100 %id)
DA695706   .d 440 to 1005 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA805525 brain .d 440 to 1007 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA858561 placenta .d 440 to 743 2 to 305   capped   304/304
(100 %)
0 diff
(100 %id)
DB070536 testis .d 440 to 966 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA048859   .d 441 to 941 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
DA300570 hippocampus .d 441 to 1011 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA316261 hippocampus .d 441 to 873 2 to 434   capped   433/433
(100 %)
0 diff
(100 %id)
DA414452 thalamus .d 441 to 1014 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA520983 brain .d 441 to 995 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA533983 brain .d 441 to 1012 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA659430   .d 441 to 1014 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA786662 brain .d 441 to 969 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA786675 brain .d 441 to 827 2 to 388   capped   387/387
(100 %)
0 diff
(100 %id)
DA803567 brain .d 441 to 1008 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB204365 trachea .d 441 to 1006 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AK314576 placenta .d 443 to 3382 1 to 2940       2940/2940
(100 %)
0 diff
(100 %id)
BP202389 amygdala .d 443 to 1023 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA233018 brain .d 443 to 967 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
BP222221   .d 443 to 1024 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP250488 hippocampus .d 443 to 1024 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP320767 placenta .d 443 to 1024 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP353168   .d 443 to 1024 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP363255 lung .d 443 to 1024 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AU077146   .d 443 to 855 1 to 413       413/413
(100 %)
0 diff
(100 %id)
AU103912   .d 443 to 492 1 to 50       50/50
(100 %)
0 diff
(100 %id)
DA104175 cerebellum .d 444 to 1001 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA114208 cerebellum .d 444 to 1004 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA119703 cerebellum .d 444 to 972 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA145472 amygdala .d 444 to 1013 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA150077 amygdala .d 444 to 1030 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA158601 amygdala .d 444 to 993 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA159746 amygdala .d 444 to 1001 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA164397 amygdala .d 444 to 1008 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA174156 amygdala .d 444 to 1020 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA181794 amygdala .d 444 to 998 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA184259 amygdala .d 444 to 937 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
DA190699 amygdala .d 444 to 1031 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA195519 amygdala .d 444 to 997 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA223239 brain .d 444 to 912 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DA226895 brain .d 444 to 1005 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA234846 brain .d 444 to 1033 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA238412 brain .d 444 to 1034 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA238489 brain .d 444 to 1034 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA247831 brain .d 444 to 1038 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA260568 caudate nucleus .d 444 to 1007 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA277690 corpus callosum .d 444 to 1009 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA283978 corpus callosum .d 444 to 1024 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA293740 hippocampus .d 444 to 1027 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA300585 hippocampus .d 444 to 1025 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA301239 hippocampus .d 444 to 1011 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA313952 hippocampus .d 444 to 995 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA323648 hippocampus .d 444 to 780 2 to 338   capped   337/337
(100 %)
0 diff
(100 %id)
DA328535 hippocampus .d 444 to 1010 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA328670 hippocampus .d 444 to 1001 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA340297 hippocampus .d 444 to 1017 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA348125 substantia nigra .d 444 to 998 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA393435 thalamus .d 444 to 1030 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA400071 thalamus .d 444 to 1021 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA403273 thalamus .d 444 to 996 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA403708 thalamus .d 444 to 984 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA404032 thalamus .d 444 to 994 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA413281 thalamus .d 444 to 998 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA433795 tongue, tumor tissue .d 444 to 1144 2 to 702   capped   701/701
(100 %)
0 diff
(100 %id)
DA484278 brain .d 444 to 977 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA495848 brain .d 444 to 1011 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA507029 brain .d 444 to 995 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA532830 brain .d 444 to 1009 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA552949   .d 444 to 961 2 to 519   capped   518/518
(100 %)
0 diff
(100 %id)
DA558079   .d 444 to 1012 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA633656 Kidney .d 444 to 1015 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA651666   .d 444 to 997 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA657162   .d 444 to 1018 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA685264   .d 444 to 983 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA688204   .d 444 to 967 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DA690225   .d 444 to 982 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA690457   .d 444 to 1019 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA699531   .d 444 to 941 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DA703159   .d 444 to 941 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DA704384   .d 444 to 941 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DA706135   .d 444 to 995 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA708904   .d 444 to 1002 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA709235   .d 444 to 969 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA711855   .d 444 to 1014 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA716620   .d 444 to 998 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA721316   .d 444 to 995 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA757254   .d 444 to 976 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA769946 brain .d 444 to 1004 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA773661 brain .d 444 to 998 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA806433 brain .d 444 to 1014 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA817582   .d 444 to 1015 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA851391 placenta .d 444 to 1034 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA883022   .d 444 to 1004 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA885916   .d 444 to 995 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA914956   .d 444 to 946 2 to 504   capped   503/503
(100 %)
0 diff
(100 %id)
DB035413 testis .d 444 to 1005 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB060535 testis .d 444 to 874 2 to 432   capped   431/431
(100 %)
0 diff
(100 %id)
DB065413 testis .d 444 to 975 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DB070953 testis .d 444 to 968 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DB073466 testis .d 444 to 949 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DB073525 testis .d 444 to 730 2 to 288   capped   287/287
(100 %)
0 diff
(100 %id)
DB077291 testis .d 444 to 1014 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB096734 testis .d 444 to 1010 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB127301 thymus .d 444 to 995 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB173374 kidney, tumor tissue .d 444 to 1010 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB208028 trachea .d 444 to 883 2 to 441   capped   440/440
(100 %)
0 diff
(100 %id)
DA045661 bladder .d 445 to 1029 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA499804 brain .d 445 to 1005 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA924056 small intestine .d 445 to 1010 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA851631 placenta .d 449 to 1042 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA588471 lung .d 452 to 1023 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA522003 brain .d 454 to 1018 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
D86956   .d 459 to 4072 1 to 3614   tiling clone, available from KIAA,   3614/3614
(100 %)
0 diff
(100 %id)
AB003334   .d 461 to 4072 1 to 3612       3612/3612
(100 %)
4 diff
(99.9 %id)
BC037553 Testis, embryonal carcinoma .d 476 to 4072 12 to 3608   available from MGC, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 3597/3597
(100 %)
1 diff
(100.0 %id)
DA446214 tongue, tumor tissue .d 480 to 1043 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA446257 tongue, tumor tissue .d 480 to 1051 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA449797 tongue, tumor tissue .d 480 to 1057 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA614376   .d 480 to 1045 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA684612   .d 480 to 947 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
DB072433 testis .d 480 to 1018 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB073021 testis .d 480 to 1023 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB215817 trachea .d 480 to 816 2 to 338   capped   337/337
(100 %)
0 diff
(100 %id)
DA510750 brain .d 482 to 1056 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA217902 brain .d 484 to 943 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
DA489923 brain .d 485 to 1052 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA902001   .d 486 to 1058 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA409886 thalamus .d 490 to 1034 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
CN406504 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 490 to 1180 1 to 691       691/691
(100 %)
1 diff
(99.9 %id)
BQ213990 melanotic melanoma, skin .d 491 to 1362 1 to 875       875/876
(99 %)
5 diff
(99.5 %id)
CN406503 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 492 to 1151 1 to 660       660/660
(100 %)
6 diff
(99.1 %id)
CN406511 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 492 to 1150 1 to 659       659/659
(100 %)
4 diff
(99.4 %id)
CR996482 T-Lymphocytes .d 493 to 1102 1 to 610       610/610
(100 %)
1 diff
(99.9 %id)
BQ233418 leiomyosarcoma, uterus .d 495 to 1519 1 to 1027       1027/1027
(100 %)
22 diff
(97.9 %id)
DA792776 brain .d 511 to 1135 2 to 626   capped   625/626
(99 %)
1 diff
(99.9 %id)
BP251626 hippocampus .d 512 to 1093 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA079777 cerebellum .d 513 to 1087 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA156187 amygdala .d 513 to 1065 2 to 556   capped   555/555
(100 %)
5 diff
(99.1 %id)
DA203940 brain .d 513 to 1079 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BM450227 melanotic melanoma, skin .d 515 to 1336 1 to 824       824/987
(83 %)
28 diff
(97.2 %id)
CN406515 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 520 to 1132 1 to 613       613/613
(100 %)
1 diff
(99.9 %id)
AL708258 human skeletal muscle .d 520 to 1119 1 to 599       599/599
(100 %)
4 diff
(99.4 %id)
DB099175 testis .d 522 to 1109 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
BP278015   .d 523 to 1104 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
AI052062 liver and spleen .d 524 to 934 411 to 1       411/411
(100 %)
0 diff
(100 %id)
DA954304 Spleen .d 524 to 1087 2 to 566   capped   565/565
(100 %)
3 diff
(99.5 %id)
DA243710 brain .d 525 to 1099 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BP218859 caudate nucleus .d 526 to 1107 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA155635 amygdala .d 527 to 1091 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA220280 brain .d 527 to 1095 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA226760 brain .d 527 to 1088 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA316147 hippocampus .d 527 to 1061 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA403070 thalamus .d 527 to 1072 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA657181   .d 527 to 1096 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB037838 testis .d 527 to 1095 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB088871 testis .d 527 to 1076 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB224125 trachea .d 527 to 1107 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA596508   .d 528 to 1024 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
BP250530 hippocampus .d 531 to 1103 1 to 576       576/582
(98 %)
4 diff
(99.4 %id)
CN406502 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 533 to 1143 10 to 620       611/620
(98 %)
6 diff
(99.1 %id)
CR990934 T-Lymphocytes .d 533 to 1386 1 to 855       855/861
(99 %)
4 diff
(99.6 %id)
AI023309 liver and spleen .d 535 to 933 399 to 1       399/399
(100 %)
0 diff
(100 %id)
BQ231774 embryonal carcinoma, cell line, testis .d 535 to 1382 1 to 850       850/850
(100 %)
6 diff
(99.3 %id)
BF795871 lymph, lymphoma, cell line .d 537 to 1322 1 to 782       782/1104
(70 %)
33 diff
(97.1 %id)
BM469046 embryonal carcinoma, cell line, testis .d 538 to 1236 1 to 703       703/1004
(70 %)
20 diff
(98.1 %id)
BF793111 adrenal cortex carcinoma, cell line, adrenal gland .d 745 to 1465 1 to 725       725/1118
(64 %)
17 diff
(98.5 %id)
CR992042 T-Lymphocytes .d 755 to 1590 1 to 841       841/843
(99 %)
8 diff
(99.1 %id)
AF039695 colorectal carcinoma .d 764 to 4072 1 to 3309       3309/3309
(100 %)
0 diff
(100 %id)
TI_1948087529   .d 805 to 1714 136 to 1070       935/1457
(64 %)
51 diff
(96.5 %id)
TI_1948087868   .d 805 to 1480 135 to 809       675/1384
(48 %)
14 diff
(99.0 %id)
TI_1948087530   .d 2658 to 3390 861 to 123       739/1489
(49 %)
11 diff
(99.3 %id)
AK307597 brain .e 1 to 1002 2 to 1003   tiling clone,   1003/1003
(100 %)
3 diff
(99.8 %id)
DA788856 brain .e 1 to 562 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA233872 brain .e 709 to 1287 2 to 582   capped   581/581
(100 %)
4 diff
(99.4 %id)
BX648623 human small intestine .e 831 to 5211 1 to 4383 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4383/4383
(100 %)
11 diff
(99.8 %id)
DA857193 placenta .e 1087 to 1694 2 to 609   tiling clone, capped   608/608
(100 %)
0 diff
(100 %id)
DB143333 thymus .e 1831 to 2298 2 to 469   tiling clone, capped   468/468
(100 %)
3 diff
(99.4 %id)
BQ717313 sympathetic trunk .e 3873 to 4376 23 to 535       513/897
(57 %)
31 diff
(96.6 %id)
DA936634 Spleen .e 3918 to 4485 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
CN406518 embryonic stem cells, cell lines H1, H7, andH9 .f 1 to 736 1 to 737   tiling clone,   737/737
(100 %)
5 diff
(99.4 %id)
BP382925 ilea mucosa .f 1 to 790 1 to 800   tiling clone,   798/929
(85 %)
21 diff
(97.8 %id)
BP260451 small intestine .f 7 to 558 1 to 553   tiling clone,   553/553
(100 %)
4 diff
(99.3 %id)
BG949700 breast .f 676 to 1047 47 to 426   tiling clone,   382/427
(89 %)
23 diff
(94.7 %id)
DB279458 uterus .g 1 to 494 2 to 497   tiling clone, capped   495/496
(99 %)
6 diff
(98.8 %id)
DA447469 tongue, tumor tissue .g 84 to 652 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DB082382 testis .g 236 to 789 2 to 555 exact tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
AL043449 testis .h 1 to 447 1 to 429 R6A P8R E9N Q10A N11A ... tiling clone,   432/429
(100 %)
17 diff
(96.1 %id)
DC341830 thalamus .i 1 to 593 1 to 593 exact tiling clone,   593/593
(100 %)
0 diff
(100 %id)
AA394027.
matches multiple genes
  .j 1 to 408 1 to 408 exact tiling clone, also hits gene C6orf134 408/408
(100 %)
0 diff
(100 %id)
AW810438 stomach .j 296 to 613 327 to 13       315/327
(96 %)
0 diff
(100 %id)
BQ364381 stomach .j 307 to 607 1 to 301   tiling clone,   301/302
(99 %)
2 diff
(99.4 %id)
BM717960 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 417 to 895 1 to 481   tiling clone, fully sequenced,   481/481
(100 %)
1 diff
(99.8 %id)
BX486085   .j 845 to 1128 1 to 284   tiling clone,   284/284
(100 %)
1 diff
(99.7 %id)
BM680423 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 865 to 1278 413 to 1   tiling clone, fully sequenced,   413/413
(100 %)
7 diff
(98.4 %id)
AW817782 stomach .j 927 to 1135 1 to 209       209/211
(99 %)
12 diff
(94.4 %id)
DC334569 hippocampus .k 1 to 613 1 to 614 N28D tiling clone,   614/614
(100 %)
3 diff
(99.6 %id)
BX507342 Liver .l-u 1 to 663 1 to 663 exact tiling clone,   663/663
(100 %)
0 diff
(100 %id)
AL700305 human skeletal muscle .l-u 375 to 935 1 to 561   tiling clone,   561/561
(100 %)
3 diff
(99.5 %id)
BF881959 lung_tumor .m-u 1 to 417 1 to 418   tiling clone,   418/418
(100 %)
3 diff
(99.3 %id)
DB157387 thymus .m-u 242 to 822 2 to 582 exact capped   581/581
(100 %)
1 diff
(99.9 %id)
BQ722604 sympathetic trunk .m-u 247 to 1157 1 to 921   tiling clone,   921/922
(99 %)
20 diff
(97.9 %id)
AA742217 germinal center B cell .m-u 619 to 1039 423 to 3   tiling clone,   421/423
(99 %)
0 diff
(100 %id)
AA336339 endometrium .n 1 to 302 1 to 302   tiling clone,   302/302
(100 %)
1 diff
(99.7 %id)
BQ717978 sympathetic trunk .n 162 to 886 1 to 725 L83I tiling clone,   725/939
(77 %)
5 diff
(99.5 %id)
BQ720903 sympathetic trunk .n 165 to 884 1 to 728   tiling clone,   728/937
(77 %)
17 diff
(98.2 %id)
AK311464 brain .o 1 to 1034 1 to 1034 Q46* tiling clone,   1034/1034
(100 %)
3 diff
(99.8 %id)
DA788730 brain .o 2 to 586 2 to 588 Q46* capped   587/587
(100 %)
3 diff
(99.5 %id)
AL701046 human skeletal muscle .p-u 1 to 779 1 to 779 exact tiling clone,   779/780
(99 %)
4 diff
(99.5 %id)
CV575530 cornea, eye .r 1 to 617 1 to 617 M83T tiling clone,   617/617
(100 %)
1 diff
(99.9 %id)
BG548225 lung .s-u 1 to 593 1 to 591 exact tiling clone,   591/591
(100 %)
4 diff
(99.4 %id)
AW840225 leiomios .s-u 18 to 278 4 to 263       260/263
(98 %)
6 diff
(97.8 %id)
BX509170   .t-u 1 to 440 1 to 440 exact tiling clone,   440/440
(100 %)
0 diff
(100 %id)
BE694727 breast .u-u 1 to 343 6 to 350 T2Q P24Q D25T T26L D27M ... tiling clone,   345/350
(98 %)
12 diff
(96.6 %id)
BE094119 breast .u-u 189 to 340 166 to 15   tiling clone, Submitted on the opposite strand 152/169
(89 %)
0 diff
(100 %id)
AK303029 testis Gene HSPH1, variant not shown              
AW816059 stomach Gene HSPH1, variant not shown              
BF344668 brain, glioblastoma with EGFR amplification Gene HSPH1, variant not shown              
DB369274   Gene HSPH1, variant not shown              
DA736726   Gene HSPH1, variant not shown       capped      
DC397325 testis Gene HSPH1, variant not shown              
DB090666 testis Gene HSPH1, variant not shown       capped      
DB341389 testis Gene HSPH1, variant not shown              
DC404306 testis Gene HSPH1, variant not shown              
DB118408 thymus Gene HSPH1, variant not shown       capped      
DB343805 thymus Gene HSPH1, variant not shown              
DB164150 thymus Gene HSPH1, variant not shown       capped      
156 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m-u, .n, .o, .p-u, .q-u, .r, .s-u, .t-u, .u-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI