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Gene CTDSPL2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
302 supporting clones for gene CTDSPL2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA814778   .a 1 to 566 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
DA732245   .a 31 to 782 2 to 753   capped   752/830
(90 %)
16 diff
(98.1 %id)
DA127373 cerebellum .a 44 to 626 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
AL119085 amygdala .a 54 to 789 1 to 736       736/736
(100 %)
3 diff
(99.6 %id)
DQ128104   .a 64 to 4636 1 to 4570 exact tiling clone,   4570/4570
(100 %)
27 diff
(99.5 %id)
DA833372 placenta .a 4011 to 4696 2 to 687   capped   686/687
(99 %)
8 diff
(98.9 %id)
BQ008009 Chondrosarcoma, Left Pelvis .a 4034 to 4648 631 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 613/613
(100 %)
2 diff
(99.7 %id)
BG030224 breast, mammary adenocarcinoma, cell line .a 4145 to 4591 1 to 447       447/447
(100 %)
2 diff
(99.6 %id)
AI077489 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4228 to 4637 410 to 1       410/410
(100 %)
1 diff
(99.8 %id)
W79839 heart .a 4229 to 4327 1 to 105   fully sequenced,   105/105
(100 %)
0 diff
(100 %id)
AI031982 parathyroid gland, parathyroid tumor .a 4248 to 4646 404 to 6       399/404
(98 %)
0 diff
(100 %id)
AW615388 Kidney .a 4248 to 4645 399 to 2       398/399
(99 %)
0 diff
(100 %id)
BQ003504 Chondrosarcoma, Left Pelvis .a 4252 to 4974 736 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 720/720
(100 %)
4 diff
(99.5 %id)
BU537277 mixed (pool of 40 RNAs) .a 4253 to 4639 1 to 387       387/419
(92 %)
2 diff
(99.6 %id)
W74196 heart .a 4297 to 4675 380 to 1   fully sequenced,   380/380
(100 %)
0 diff
(100 %id)
AW152086 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4317 to 4675 359 to 1       359/359
(100 %)
0 diff
(100 %id)
AI223176 pooled .a 4334 to 4650 317 to 1       317/317
(100 %)
5 diff
(98.5 %id)
BM729031 eye, fetal eye .a 4365 to 5160 1 to 788     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 788/791
(99 %)
11 diff
(98.7 %id)
AA635116 lung, lung carcinoma .a 4417 to 4831 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
GD145877   .a 4430 to 4637 1 to 211   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 211/211
(100 %)
6 diff
(97.2 %id)
EH310092   .a 4438 to 4520 1 to 83       83/83
(100 %)
0 diff
(100 %id)
BU155782 melanotic melanoma, skin .a 4598 to 5429 1 to 835   tiling clone,   835/840
(99 %)
9 diff
(99.0 %id)
DA829147 placenta .a 4667 to 5424 2 to 762   capped   761/765
(99 %)
15 diff
(98.1 %id)
DA369736 subthalamic nucleus .a 4770 to 5346 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CD652147 Embryonic Stem cells .a 4810 to 5632 8 to 821       814/822
(99 %)
21 diff
(97.5 %id)
BG258217 embryonal carcinoma, cell line, testis .a 5019 to 5730 1 to 702       702/924
(75 %)
21 diff
(97.8 %id)
AA425048 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5196 to 5661 1 to 465   tiling clone,   465/465
(100 %)
1 diff
(99.8 %id)
FN120607 breast carcinoma .a 5223 to 5320 1 to 96       96/96
(100 %)
2 diff
(98.0 %id)
BX089805 placenta .a 5365 to 5765 1 to 402   tiling clone,   402/402
(100 %)
2 diff
(99.6 %id)
BM681974 eye, fetal eye .a 5737 to 6452 735 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 717/717
(100 %)
1 diff
(99.9 %id)
AI469879 pooled .a 5807 to 6323 518 to 2       517/518
(99 %)
0 diff
(100 %id)
CA424778 cell lines, Chondrosarcoma .a 5830 to 6456 646 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 628/628
(100 %)
1 diff
(99.9 %id)
AI740525 pooled .a 5892 to 6457 572 to 7   tiling clone,   566/574
(98 %)
0 diff
(100 %id)
DB310830 subthalamic nucleus .a 5940 to 6456 519 to 1       519/519
(100 %)
4 diff
(99.3 %id)
AI800754 pooled .a 5970 to 6457 494 to 7       488/494
(98 %)
0 diff
(100 %id)
AW169159 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 6010 to 6456 473 to 27   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 447/447
(100 %)
10 diff
(97.8 %id)
DB513605 testis .a 6026 to 6454 1 to 431     Submitted on the opposite strand 431/433
(99 %)
9 diff
(98.0 %id)
AA495986 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6029 to 6425 397 to 1       397/397
(100 %)
0 diff
(100 %id)
AI189295 placenta .a 6036 to 6456 440 to 20   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 421/421
(100 %)
1 diff
(99.8 %id)
AA878902 2 pooled tumors (clear cell type), Kidney .a 6096 to 6457 365 to 4       362/365
(99 %)
0 diff
(100 %id)
DB380067 placenta .a 6121 to 6453 336 to 4       333/336
(99 %)
0 diff
(100 %id)
AI262709 placenta .a 6147 to 6457 313 to 3       311/313
(99 %)
0 diff
(100 %id)
FN067599 breast carcinoma .a 6238 to 6322 1 to 88       88/94
(93 %)
5 diff
(94.7 %id)
BC035744 Brain, adult medulla .b 1 to 1609 1 to 1609 exact tiling clone, available from MGC, AAA   1609/1609
(100 %)
0 diff
(100 %id)
BM560355 brain, medulla .b 7 to 810 24 to 828       805/1056
(76 %)
16 diff
(98.5 %id)
DB043395 testis .b 16 to 584 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB027620 testis .b 17 to 594 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB045381 testis .b 17 to 586 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BP371729 testis .b 38 to 616 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
NM_016396.2   .c 1 to 4874 2 to 4875 exact RefSeq,   4875/4875
(100 %)
0 diff
(100 %id)
DA995235 synovial membrane tissue from rheumatioidarthritis .c 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
FN092507 breast carcinoma .c 183 to 263 1 to 81       81/81
(100 %)
2 diff
(97.6 %id)
AK291230   .c 215 to 2008 1 to 1794 exact     1794/1794
(100 %)
3 diff
(99.9 %id)
DA756068   .c 216 to 797 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DA024976   .c 218 to 793 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA714373   .c 218 to 777 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA115457 cerebellum .c 219 to 777 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB089766 testis .c 219 to 790 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA904317   .c 220 to 792 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BM152723 leukopheresis .c 222 to 537 1 to 317       317/337
(94 %)
14 diff
(95.9 %id)
DA805778 brain .c 232 to 773 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DW410309 Liver .c 237 to 553 18 to 334       317/334
(94 %)
6 diff
(98.3 %id)
BQ435158 leiomyosarcoma, uterus .c 239 to 1115 1 to 880       880/880
(100 %)
15 diff
(98.3 %id)
DB092230 testis .c 242 to 785 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB092657 testis .c 242 to 792 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BM147763 leukopheresis .c 244 to 740 1 to 498       498/504
(98 %)
19 diff
(96.3 %id)
CN362640 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 246 to 1024 8 to 787       780/787
(99 %)
7 diff
(99.2 %id)
BP233384 coronary artery .c 246 to 828 1 to 583       583/583
(100 %)
0 diff
(100 %id)
AF161478 blood .c 247 to 3261 1 to 3009 N107M G108E E109K A110L AAA   3009/3009
(100 %)
28 diff
(99.1 %id)
AF161543 blood .c 247 to 3124 1 to 2877 S85V T86N P87T R88K A89S ...     2877/2877
(100 %)
13 diff
(99.6 %id)
AL691672   .c 247 to 915 1 to 668       668/670
(99 %)
5 diff
(99.3 %id)
BX486755   .c 247 to 789 1 to 543       543/543
(100 %)
2 diff
(99.7 %id)
DA757143   .c 247 to 792 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BM468591 melanotic melanoma, skin .c 248 to 1100 6 to 863       858/1026
(83 %)
16 diff
(98.5 %id)
AV761068 bone marrow .c 249 to 714 1 to 459       459/464
(98 %)
12 diff
(97.5 %id)
DA785739 brain .c 249 to 806 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA809750 brain .c 249 to 908 2 to 661   capped   660/661
(99 %)
1 diff
(99.9 %id)
DB155029 thymus .c 249 to 832 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB237835 trachea .c 249 to 833 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA450768 tongue, tumor tissue .c 251 to 824 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA769144 brain .c 251 to 773 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
CN362637 embryonic stem cells, DMSO-treated H9 cellline .c 254 to 652 1 to 399       399/399
(100 %)
0 diff
(100 %id)
AA081293   .c 255 to 580 1 to 333       333/336
(99 %)
10 diff
(97.1 %id)
BM542549 leiomyosarcoma, uterus .c 259 to 972 27 to 750       724/1252
(57 %)
25 diff
(98.1 %id)
DA736647   .c 259 to 1039 2 to 783   capped   782/787
(99 %)
20 diff
(97.5 %id)
DA097766 cerebellum .c 260 to 719 2 to 461   capped   460/460
(100 %)
5 diff
(99.0 %id)
TI_154150761   .c 261 to 1059 77 to 874       798/799
(99 %)
11 diff
(98.7 %id)
BM457375 embryonal carcinoma, cell line, testis .c 263 to 974 1 to 718       718/1136
(63 %)
12 diff
(99.0 %id)
BQ430609 embryonal carcinoma, cell line, testis .c 264 to 1289 10 to 1029       1020/1079
(94 %)
23 diff
(97.9 %id)
AL520076 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 270 to 1295 1 to 1023       1023/1023
(100 %)
10 diff
(99.1 %id)
AK226094   .c 272 to 3535 1 to 3264 exact tiling clone,   3264/3264
(100 %)
0 diff
(100 %id)
CN362635 embryonic stem cells, cell lines H1, H7, andH9 .c 272 to 908 1 to 639       641/639
(100 %)
5 diff
(99.3 %id)
BG108724 retina, Retinal Pigment Epithelium sheets .c 273 to 447 1 to 178       178/178
(100 %)
3 diff
(98.4 %id)
BM452318 eye, retinoblastoma .c 274 to 1180 1 to 918       915/1043
(87 %)
14 diff
(98.7 %id)
H85275 melanocyte .c 279 to 602 1 to 326       326/366
(89 %)
5 diff
(98.7 %id)
CF135513 lymph .c 279 to 926 7 to 655       649/659
(98 %)
8 diff
(98.8 %id)
TI_154163890   .c 279 to 1181 74 to 965       892/927
(96 %)
28 diff
(97.0 %id)
AY364237   .c 416 to 2185 1 to 1770 I321V     1770/1770
(100 %)
3 diff
(99.9 %id)
DA123397 cerebellum .c 496 to 1044 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA174556 amygdala .c 496 to 1056 2 to 562   capped   561/562
(99 %)
3 diff
(99.5 %id)
AL599510   .c 501 to 1020 1 to 521       521/522
(99 %)
5 diff
(99.1 %id)
DB073544 testis .c 598 to 1138 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BP369412 testis .c 604 to 1173 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
DA735552   .c 613 to 1317 2 to 704   capped   703/703
(100 %)
8 diff
(98.9 %id)
BU506785 leiomyosarcoma, uterus .c 675 to 1222 12 to 559       548/634
(86 %)
7 diff
(98.9 %id)
BQ228823 embryonal carcinoma, cell line, testis .c 687 to 1185 1 to 500       500/1358
(36 %)
18 diff
(98.7 %id)
BE698281 uterus_tumor .c 757 to 1105 24 to 371       348/374
(93 %)
7 diff
(98.2 %id)
AK001385   .c 781 to 3261 1 to 2481   available from FLJ,   2481/2481
(100 %)
5 diff
(99.8 %id)
AU127243   .c 781 to 1446 2 to 670   capped   667/742
(89 %)
7 diff
(99.1 %id)
BG230818 nasopharynx, normal epithelium .c 933 to 1097 171 to 7       165/171
(96 %)
0 diff
(100 %id)
BP292692 lung .c 947 to 1501 1 to 555       555/555
(100 %)
4 diff
(99.3 %id)
CN362639 embryonic stem cells, cell lines H1, H7, andH9 .c 956 to 1731 1 to 776       776/776
(100 %)
4 diff
(99.5 %id)
AW966861   .c 962 to 1528 35 to 601       567/638
(88 %)
9 diff
(98.6 %id)
AW966950   .c 962 to 1649 1 to 680       680/686
(99 %)
12 diff
(98.3 %id)
AA251031.
matches multiple genes
germinal center B cell .c 962 to 1328 1 to 369     also hits gene SLC35F5 369/371
(99 %)
4 diff
(99.0 %id)
AA251032.
matches multiple genes
germinal center B cell .c 962 to 1385 1 to 423     also hits gene C17orf42 423/435
(97 %)
3 diff
(99.4 %id)
DB199514 trachea .c 1061 to 1617 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BI762400 pooled colon, kidney, stomach .c 1079 to 1808 1 to 738       738/739
(99 %)
21 diff
(97.2 %id)
TI_57151235   .c 1079 to 1808 36 to 773       738/774
(95 %)
27 diff
(96.6 %id)
DA293497 hippocampus .c 1080 to 1654 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA600940   .c 1082 to 1639 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA747115   .c 1158 to 1725 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CB150530 cervix, Uterine .c 1260 to 1841 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AI081880 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1283 to 1899 617 to 1       617/617
(100 %)
2 diff
(99.7 %id)
BQ951566 leiomyosarcoma, uterus .c 1322 to 2251 1 to 930       930/937
(99 %)
21 diff
(97.8 %id)
BP217404 caudate nucleus .c 1332 to 1911 1 to 580       580/582
(99 %)
1 diff
(99.9 %id)
BY798692 eye .c 1413 to 2038 1 to 626       626/626
(100 %)
0 diff
(100 %id)
AA332678 Embryo, 8 weeks .c 1442 to 1733 1 to 292       292/295
(98 %)
1 diff
(99.7 %id)
BM801121 embryonal carcinoma, cell line, testis .c 1467 to 2130 14 to 685       672/1068
(62 %)
24 diff
(97.8 %id)
BU182006 eye, retinoblastoma .c 1519 to 2345 1 to 837       837/906
(92 %)
19 diff
(98.0 %id)
BP337142 coronary artery .c 1535 to 2117 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP337175 coronary artery .c 1535 to 2118 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BX644049   .c 1550 to 2258 1 to 709       709/709
(100 %)
4 diff
(99.5 %id)
H84869 melanocyte .c 1558 to 1867 309 to 1       309/309
(100 %)
5 diff
(98.4 %id)
AA021443 eye, retina .c 1582 to 2033 15 to 468       454/468
(97 %)
7 diff
(98.6 %id)
AL701926 human skeletal muscle .c 1622 to 1932 38 to 347       310/347
(89 %)
7 diff
(98.0 %id)
CN362636 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1657 to 2183 1 to 527       527/527
(100 %)
0 diff
(100 %id)
BF842590 head_neck .c 1679 to 2224 556 to 12     Submitted on the opposite strand 545/556
(98 %)
2 diff
(99.7 %id)
BU428924 lymph .c 1711 to 1982 8 to 279       272/279
(97 %)
7 diff
(97.5 %id)
TI_154149850   .c 1711 to 2233 78 to 615       538/539
(99 %)
53 diff
(90.2 %id)
BM787978 stomach .c 1774 to 2342 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BM697975 eye, fetal eyes .c 1780 to 2232 1 to 453       453/453
(100 %)
0 diff
(100 %id)
BM728548 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1890 to 2655 1 to 759       759/759
(100 %)
7 diff
(99.1 %id)
AA382768 testis .c 1899 to 2215 1 to 317       317/317
(100 %)
0 diff
(100 %id)
TI_151710184   .c 1910 to 2462 642 to 80       563/1022
(55 %)
0 diff
(100 %id)
AU117684 whole embryo, mainly head .c 2060 to 2874 23 to 839   capped   817/847
(96 %)
5 diff
(99.5 %id)
DA042087 bladder .c 2062 to 2630 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BP273500   .c 2062 to 2632 1 to 571       571/571
(100 %)
3 diff
(99.5 %id)
DB140472 thymus .c 2065 to 2560 2 to 497   capped   496/496
(100 %)
1 diff
(99.8 %id)
BU571159 brain, glioblastoma .c 2074 to 2867 1 to 798       798/800
(99 %)
14 diff
(98.3 %id)
AA417141   .c 2075 to 2509 1 to 435       435/435
(100 %)
0 diff
(100 %id)
BQ960069 leiomyosarcoma, uterus .c 2111 to 3035 1 to 934       934/934
(100 %)
23 diff
(97.6 %id)
AA905498 pooled .c 2162 to 2632 1 to 471     Submitted on the opposite strand 471/471
(100 %)
4 diff
(99.2 %id)
AW296759   .c 2162 to 2600 10 to 449     Submitted on the opposite strand 440/449
(97 %)
6 diff
(98.7 %id)
AW085183 pooled .c 2179 to 2633 1 to 455     Submitted on the opposite strand 455/455
(100 %)
0 diff
(100 %id)
CD677795 eye, Trabecular meshwork .c 2206 to 2854 1 to 649       649/649
(100 %)
0 diff
(100 %id)
BF221584 fibrotheoma, ovary .c 2281 to 2736 1 to 456     Submitted on the opposite strand 456/456
(100 %)
2 diff
(99.6 %id)
BX371356 Neuroblastoma Cot 10-normalized .c 2324 to 2810 486 to 1       486/551
(88 %)
31 diff
(94.4 %id)
AI978892 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2336 to 2689 401 to 48   AAA   354/354
(100 %)
8 diff
(97.8 %id)
BF196360 fibrotheoma, ovary .c 2393 to 2874 1 to 482     Submitted on the opposite strand 482/482
(100 %)
2 diff
(99.6 %id)
BE887006 leiomyosarcoma, uterus .c 2398 to 3122 1 to 723       723/828
(87 %)
11 diff
(98.7 %id)
BX092212   .c 2412 to 3129 1 to 718       718/718
(100 %)
0 diff
(100 %id)
AA478538   .c 2412 to 2891 1 to 480     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 480/480
(100 %)
0 diff
(100 %id)
BP289652 lung .c 2434 to 3013 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BF082393 breast_normal .c 2456 to 2730 282 to 5       278/283
(98 %)
0 diff
(100 %id)
W07345.
matches multiple genes
lung .c 2468 to 3011 1 to 549     also hits gene GGH 549/550
(99 %)
7 diff
(98.8 %id)
BQ229926 embryonal carcinoma, cell line, testis .c 2497 to 3262 1 to 766       766/770
(99 %)
1 diff
(99.9 %id)
AA282651 germinal center B cell .c 2515 to 2972 1 to 456       456/456
(100 %)
2 diff
(99.6 %id)
AL520075 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 2591 to 3585 996 to 1       996/996
(100 %)
14 diff
(98.6 %id)
CB146727 Liver .c 2611 to 3192 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AV739524 cord Blood .c 2671 to 3128 463 to 20     Submitted on the opposite strand 444/505
(87 %)
0 diff
(100 %id)
BM697995 eye, fetal eyes .c 2684 to 3213 1 to 530     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 530/530
(100 %)
1 diff
(99.9 %id)
TI_158436038   .c 2705 to 3261 642 to 86   AAA   557/966
(57 %)
0 diff
(100 %id)
AU149895   .c 2707 to 3261 557 to 1       557/557
(100 %)
20 diff
(96.5 %id)
BG899322 cartilage .c 2723 to 3186 81 to 544       464/486
(95 %)
3 diff
(99.4 %id)
TI_149280894   .c 2757 to 3261 652 to 148   AAA   505/812
(62 %)
28 diff
(96.6 %id)
TI_154011449   .c 2767 to 3263 614 to 114       501/993
(50 %)
0 diff
(100 %id)
BU742568 eye, fetal eye .c 2769 to 3466 716 to 19   AAA   698/698
(100 %)
2 diff
(99.8 %id)
AW967568   .c 2773 to 3382 610 to 1     Submitted on the opposite strand 610/612
(99 %)
4 diff
(99.4 %id)
BE568480 bladder, carcinoma, cell line .c 2774 to 3498 1 to 707       707/735
(96 %)
32 diff
(95.7 %id)
AW004824 colon .c 2777 to 3261 485 to 1       485/485
(100 %)
0 diff
(100 %id)
BF692629 melanotic melanoma, high MDR, skin .c 2788 to 3503 1 to 705       705/839
(84 %)
24 diff
(97.2 %id)
AA825568 germinal center B cell .c 2806 to 3261 488 to 33   AAA   456/456
(100 %)
4 diff
(99.2 %id)
AW971550   .c 2807 to 3382 576 to 1     Submitted on the opposite strand 576/577
(99 %)
3 diff
(99.5 %id)
AV740285 cord Blood .c 2821 to 3128 322 to 22     Submitted on the opposite strand 301/323
(93 %)
0 diff
(100 %id)
DB448507 testis .c 2829 to 3249 1 to 423       423/423
(100 %)
2 diff
(99.6 %id)
AA725117 parathyroid gland, parathyroid tumor .c 2898 to 3263 370 to 5       366/370
(98 %)
0 diff
(100 %id)
BU679458 lung, Primary Lung Epithelial Cells .c 2909 to 3261 369 to 17   AAA   353/353
(100 %)
7 diff
(98.1 %id)
BU182272 eye, retinoblastoma .c 2928 to 3649 1 to 732       732/810
(90 %)
18 diff
(97.8 %id)
FN174591 breast carcinoma .c 2963 to 3070 108 to 2     Submitted on the opposite strand 107/108
(99 %)
0 diff
(100 %id)
BE178032 head_neck .c 3017 to 3521 506 to 3     Submitted on the opposite strand 504/509
(99 %)
0 diff
(100 %id)
CD250770 Blood vessels - aorta, basilar and artery .c 3028 to 3747 1 to 729       729/750
(97 %)
14 diff
(98.2 %id)
AA250923 germinal center B cell .c 3035 to 3383 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
AI167429 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3037 to 3467 432 to 3       430/432
(99 %)
0 diff
(100 %id)
DB367849   .c 3078 to 3626 547 to 3       545/547
(99 %)
0 diff
(100 %id)
AI458882 pooled .c 3085 to 3617 533 to 1       533/533
(100 %)
0 diff
(100 %id)
BY996090   .c 3102 to 3811 10 to 719       710/719
(98 %)
6 diff
(99.2 %id)
AI347219 2 pooled tumors (clear cell type), Kidney .c 3105 to 3547 446 to 4       443/446
(99 %)
5 diff
(98.9 %id)
BE089082 breast .c 3120 to 3500 383 to 4     Submitted on the opposite strand 380/383
(99 %)
0 diff
(100 %id)
EH312385   .c 3133 to 3186 1 to 55       55/55
(100 %)
1 diff
(98.2 %id)
AW838465 leiomios .c 3146 to 3527 419 to 33       387/419
(92 %)
0 diff
(100 %id)
AA478539   .c 3166 to 3617 464 to 13   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 452/452
(100 %)
0 diff
(100 %id)
BE089080 breast .c 3167 to 3447 282 to 1     Submitted on the opposite strand 282/282
(100 %)
2 diff
(99.3 %id)
TI_154136644   .c 3180 to 3821 710 to 60   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 651/1345
(48 %)
21 diff
(98.5 %id)
AW778804 colon, moderately-differentiated adenocarcinoma .c 3183 to 3632 450 to 2       449/450
(99 %)
0 diff
(100 %id)
AW118371 brain, tumor, 5 pooled (see description) .c 3206 to 3261 56 to 1       56/56
(100 %)
0 diff
(100 %id)
BM147905 leukopheresis .c 3251 to 3771 1 to 523       523/523
(100 %)
6 diff
(98.9 %id)
AI298346 placenta .c 3254 to 3632 382 to 4       379/382
(99 %)
0 diff
(100 %id)
AL121400 melanoma (MeWo cell line) .c 3256 to 3469 205 to 418       214/418
(51 %)
14 diff
(96.7 %id)
DB369172   .c 3256 to 3821 563 to 1       563/563
(100 %)
22 diff
(96.1 %id)
BU960157 mixed (pool of 40 RNAs) .c 3325 to 3628 1 to 304       304/340
(89 %)
2 diff
(99.5 %id)
AV718470 corresponding non cancerous liver tissue .c 3372 to 3792 422 to 1     Submitted on the opposite strand 422/422
(100 %)
1 diff
(99.8 %id)
AI082617   .c 3385 to 3822 441 to 4       438/441
(99 %)
0 diff
(100 %id)
DB355576 whole embryo, mainly head .c 3388 to 3815 436 to 7       430/436
(98 %)
0 diff
(100 %id)
BU170998 eye, retinoblastoma .c 3395 to 3589 208 to 16   AAA Submitted on the opposite strand 193/197
(97 %)
3 diff
(98.5 %id)
BG291680 bladder, transitional cell papilloma, cell line .c 3405 to 3605 521 to 731       690/942
(73 %)
15 diff
(98.5 %id)
AW005971 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3408 to 3821 415 to 1       415/415
(100 %)
7 diff
(98.4 %id)
BG943226 blood .c 3443 to 3821 411 to 32   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 380/380
(100 %)
2 diff
(99.5 %id)
AW578711 colon .c 3450 to 3677 251 to 29       223/253
(88 %)
0 diff
(100 %id)
AW606014 head_neck .c 3452 to 3677 239 to 15       225/240
(93 %)
0 diff
(100 %id)
AA741199 2 pooled tumors (clear cell type), Kidney .c 3454 to 3822 371 to 3       369/371
(99 %)
0 diff
(100 %id)
AW578715 colon .c 3455 to 3677 238 to 14       225/242
(92 %)
0 diff
(100 %id)
AA416987   .c 3524 to 3908 385 to 1   tiling clone,   385/385
(100 %)
0 diff
(100 %id)
AI672991 thymus, pooled .c 3539 to 3821 302 to 21   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 282/287
(98 %)
1 diff
(99.7 %id)
AI382381   .c 3541 to 3822 284 to 3       282/284
(99 %)
0 diff
(100 %id)
BF691877 melanotic melanoma, high MDR, skin .c 3639 to 4274 1 to 630   tiling clone,   630/852
(73 %)
11 diff
(98.8 %id)
BF107570 placenta .c 3772 to 4410 1 to 641       641/743
(86 %)
25 diff
(96.7 %id)
BF038212 adenocarcinoma, ovary .c 4008 to 4807 1 to 794       794/887
(89 %)
25 diff
(97.2 %id)
AV756817 bone marrow .c 4082 to 4507 85 to 501       417/501
(83 %)
6 diff
(98.9 %id)
AV758799 bone marrow .c 4082 to 4507 68 to 487   tiling clone,   420/491
(85 %)
8 diff
(98.4 %id)
BM667162 eye, fetal eyes .c 4394 to 4860 485 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 467/467
(100 %)
0 diff
(100 %id)
DB034371 testis .d 1 to 574 2 to 575   tiling clone, capped   574/575
(99 %)
1 diff
(99.9 %id)
CR627421 bone marrow .d 210 to 4461 1 to 4253 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 4253/4253
(100 %)
1 diff
(100.0 %id)
DB092047 testis .e 1 to 463 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DB092057 testis .e 1 to 546 2 to 547   tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
DA775342 brain .e 9 to 569 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA781426 brain .e 13 to 586 2 to 577   capped   576/576
(100 %)
4 diff
(99.4 %id)
DB280641 uterus .e 13 to 559 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB165785 thymus .e 17 to 606 2 to 591   capped   590/591
(99 %)
1 diff
(99.9 %id)
DB235076 trachea .e 21 to 577 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA721739   .e 26 to 590 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BI522510 brain .e 48 to 694 1 to 661       661/665
(99 %)
21 diff
(96.9 %id)
BI522447 brain .e 48 to 934 1 to 890   tiling clone,   890/891
(99 %)
17 diff
(98.1 %id)
TI_44185037   .e 48 to 934 70 to 959       890/960
(92 %)
23 diff
(97.7 %id)
TI_44185196   .e 48 to 694 31 to 691       661/695
(95 %)
27 diff
(96.2 %id)
CN362638 embryonic stem cells, cell lines H1, H7, andH9 .e 794 to 1535 1 to 743   tiling clone,   743/743
(100 %)
1 diff
(99.9 %id)
AA780654   .e 1507 to 1988 477 to 1   tiling clone,   477/477
(100 %)
11 diff
(97.7 %id)
AI061197   .e 1645 to 2005 361 to 1   tiling clone,   361/361
(100 %)
2 diff
(99.5 %id)
AW813919 stomach .e 1897 to 2376 12 to 490   tiling clone,   479/499
(95 %)
18 diff
(96.4 %id)
AA661556   .e 2013 to 2372 1 to 359   tiling clone,   359/368
(97 %)
7 diff
(98.1 %id)
AI821240   .e 2017 to 2372 361 to 7       355/373
(95 %)
0 diff
(100 %id)
AI821894   .e 2017 to 2372 19 to 373   tiling clone,   355/380
(93 %)
5 diff
(98.7 %id)
AA993968 pooled .e 2205 to 2566 362 to 1   tiling clone,   362/362
(100 %)
1 diff
(99.8 %id)
BE003864 breast_normal .e 2503 to 2818 1 to 313   tiling clone,   313/313
(100 %)
6 diff
(98.1 %id)
DB079442 testis .f 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
CD642221 Embryonic Stem cells .f 46 to 820 11 to 785 L3P K176X Y199L S200L N201K ... tiling clone,   775/785
(98 %)
11 diff
(98.6 %id)
DB016406 esophageal, tumor tissue .g 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
BX390094 Neuroblastoma Cot 10-normalized .g 381 to 1240 26 to 883   tiling clone,   858/883
(97 %)
14 diff
(98.5 %id)
DB237749 trachea .h 1 to 492 2 to 492   tiling clone, capped   491/493
(99 %)
10 diff
(98.0 %id)
DA018957   .h 29 to 577 2 to 550 N77D capped   549/549
(100 %)
2 diff
(99.7 %id)
DA460846 tongue, tumor tissue .h 37 to 606 2 to 572 R6L K7E A8S S9F Q10S ... tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
CV319909 testis_normal .i 1 to 350 351 to 3     Submitted on the opposite strand 349/353
(98 %)
0 diff
(100 %id)
BF377832 testis_normal .i 4 to 342 17 to 355   tiling clone,   339/355
(95 %)
6 diff
(98.4 %id)
CV319939 testis_normal .i 4 to 347 346 to 5     Submitted on the opposite strand 342/352
(97 %)
0 diff
(100 %id)
BF377848 testis_normal .i 19 to 336 319 to 1       319/319
(100 %)
8 diff
(97.5 %id)
BF377844 testis_normal .i 20 to 349 337 to 6   tiling clone,   332/337
(98 %)
0 diff
(100 %id)
BF377841 testis_normal .i 33 to 342 1 to 311       311/312
(99 %)
8 diff
(97.5 %id)
BF377850 testis_normal .i 38 to 333 1 to 296       296/305
(97 %)
7 diff
(97.8 %id)
AK128644 trachea .i 208 to 3816 1 to 3609 exact tiling clone, available from FLJ,   3609/3609
(100 %)
3 diff
(100.0 %id)
DB236996 trachea .i 209 to 743 2 to 536   capped   535/535
(100 %)
3 diff
(99.5 %id)
DB109973 thymus .i 1562 to 2140 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
DB350363 trachea .i 3267 to 3816 552 to 1       552/552
(100 %)
2 diff
(99.7 %id)
BM552151 leiomyosarcoma, uterus .j 1 to 748 15 to 763 exact tiling clone,   751/1015
(73 %)
14 diff
(98.7 %id)
DB086486 testis .j 95 to 655 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DW418003 Liver .j 391 to 629 15 to 253   AAA   239/253
(94 %)
6 diff
(97.7 %id)
DW418004 Liver .j 391 to 629 15 to 253   AAA   239/253
(94 %)
6 diff
(97.7 %id)
DW419797 Liver .j 391 to 629 15 to 253   AAA   239/253
(94 %)
7 diff
(97.3 %id)
CF138069 lymph .j 438 to 754 8 to 324   tiling clone,   317/338
(93 %)
11 diff
(96.8 %id)
DA102316 cerebellum .k 1 to 562 7 to 568 exact capped   567/567
(100 %)
0 diff
(100 %id)
DA219396 brain .k 1 to 526 7 to 532 exact capped   531/531
(100 %)
0 diff
(100 %id)
DA405641 thalamus .k 1 to 554 7 to 560 exact capped   559/559
(100 %)
1 diff
(99.9 %id)
DA487322 brain .k 1 to 566 7 to 573 exact capped   572/572
(100 %)
3 diff
(99.5 %id)
DA799002 brain .k 1 to 544 7 to 550 exact capped   549/549
(100 %)
0 diff
(100 %id)
DA857012 placenta .k 1 to 545 7 to 551 exact capped   550/550
(100 %)
0 diff
(100 %id)
DA991337 synovial membrane tissue from rheumatioidarthritis .k 1 to 547 7 to 553 exact capped   552/552
(100 %)
1 diff
(99.9 %id)
DB073645 testis .k 1 to 538 7 to 544 exact capped   543/543
(100 %)
0 diff
(100 %id)
DB229923 trachea .k 1 to 562 7 to 568 exact capped   567/567
(100 %)
0 diff
(100 %id)
DA804749 brain .k 1 to 556 6 to 561 exact capped   560/561
(99 %)
2 diff
(99.7 %id)
BU429607 lymph .k 1 to 516 3 to 518 exact     518/518
(100 %)
3 diff
(99.5 %id)
DA490705 brain .k 1 to 516 2 to 518 exact capped   517/517
(100 %)
2 diff
(99.7 %id)
BP290068 lung .k 1 to 583 1 to 583 exact tiling clone,   583/583
(100 %)
0 diff
(100 %id)
DA801207 brain .k 1 to 548 2 to 549 exact capped   548/548
(100 %)
0 diff
(100 %id)
DA805629 brain .k 1 to 536 2 to 538 exact capped   537/537
(100 %)
1 diff
(99.9 %id)
DA993279 synovial membrane tissue from rheumatioidarthritis .k 1 to 541 2 to 542 exact capped   541/541
(100 %)
1 diff
(99.9 %id)
DA994443 synovial membrane tissue from rheumatioidarthritis .k 1 to 547 2 to 548 exact capped   547/547
(100 %)
0 diff
(100 %id)
DB223052 trachea .k 2 to 562 2 to 562 N40S capped   561/561
(100 %)
1 diff
(99.9 %id)
DB092246 testis .k 4 to 544 2 to 542 exact capped   541/541
(100 %)
1 diff
(99.9 %id)
BG394548 eye, retinoblastoma .k 6 to 516 1 to 511 exact available from MGC, AAA   511/511
(100 %)
1 diff
(99.9 %id)
BC018623 Eye, retinoblastoma .k 7 to 516 1 to 510 exact available from MGC, AAA   510/510
(100 %)
0 diff
(100 %id)
DN995761 breast cancer, Mammary gland (cancer tissue) .k 7 to 613 1 to 608 exact tiling clone,   608/608
(100 %)
6 diff
(99.1 %id)
BM548165 brain, hippocampus .k 13 to 638 1 to 628 exact tiling clone,   628/1198
(52 %)
10 diff
(99.2 %id)
AW504443 lymph .k 19 to 516 1 to 498 exact     498/499
(99 %)
5 diff
(99.0 %id)
TI_154160599   .k 25 to 638 81 to 694 exact tiling clone,   614/716
(85 %)
15 diff
(98.0 %id)
TI_154167810   .k 34 to 542 80 to 589 Q21X Q39X     510/514
(99 %)
14 diff
(97.3 %id)
BG720001 testis .l 1 to 588 1 to 589 exact tiling clone,   589/589
(100 %)
4 diff
(99.4 %id)
DB145888 thymus .m 1 to 542 2 to 543 exact tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
DB245851 uterus, tumor tissue .n-u 1 to 391 158 to 548 exact tiling clone, capped   391/547
(71 %)
5 diff
(99.1 %id)
AW814261 stomach .o-u 1 to 110 17 to 126 D2V W3G K5N Y6T N7M ... tiling clone,   110/126
(87 %)
6 diff
(95.3 %id)
DB300211 cerebellum Gene CTDSPL2, variant not shown         Suspected internal deletion, this clone was ignored    
DA116362 cerebellum Gene CTDSPL2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB309258 hippocampus Gene CTDSPL2, variant not shown         This clone was ignored    
DA323824 hippocampus Gene CTDSPL2, variant not shown       capped This clone was ignored    
DA501568 brain Gene CTDSPL2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA503494 brain Gene CTDSPL2, variant not shown       capped Suspected internal deletion, this clone was ignored    
AV652007 corresponding non cancerous liver tissue Gene CTDSPL2, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BG167984 hypernephroma, cell line, Kidney Gene CTDSPL2, variant not shown         This clone was ignored    
DA802648 brain Gene CTDSPL2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA802708 brain Gene CTDSPL2, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C