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Gene HSD11B1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
145 supporting clones for gene HSD11B1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CF596989 ovary .a 1 to 672 1 to 680   tiling clone,   680/792
(85 %)
17 diff
(97.9 %id)
AV753293 Pituitary .a 16 to 672 1 to 652       652/677
(96 %)
18 diff
(97.4 %id)
CF596697 ovary .a 21 to 801 1 to 787       787/876
(89 %)
28 diff
(96.9 %id)
CF596609 ovary .a 22 to 804 1 to 794       794/901
(88 %)
26 diff
(97.2 %id)
CF597030 ovary .a 42 to 675 1 to 638       638/781
(81 %)
11 diff
(98.6 %id)
CF597110 ovary .a 51 to 794 1 to 749       749/751
(99 %)
11 diff
(98.6 %id)
BG701903 brain, hippocampus .a 53 to 798 1 to 744       744/746
(99 %)
15 diff
(98.0 %id)
CF596822 ovary .a 54 to 778 1 to 727       727/727
(100 %)
5 diff
(99.4 %id)
CF596616 ovary .a 54 to 491 1 to 442       442/1353
(32 %)
14 diff
(99.0 %id)
CF596606 ovary .a 54 to 541 1 to 493       493/1242
(39 %)
14 diff
(98.9 %id)
CF597104 ovary .a 54 to 668 1 to 621       621/814
(76 %)
17 diff
(98.0 %id)
CF597518 ovary .a 54 to 593 1 to 549       549/1151
(47 %)
19 diff
(98.4 %id)
DA128942 cerebellum .a 56 to 619 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CF596992 ovary .a 56 to 788 1 to 739       739/784
(94 %)
18 diff
(97.8 %id)
CF597442 ovary .a 56 to 668 1 to 624   AAA   624/809
(77 %)
23 diff
(97.2 %id)
CB116650 Liver .a 56 to 182 1 to 127       127/127
(100 %)
4 diff
(96.9 %id)
BF701795 brain, primitive neuroectoderm .a 57 to 679 1 to 624       624/795
(78 %)
11 diff
(98.7 %id)
BG539055 lung .a 57 to 679 1 to 622       622/719
(86 %)
13 diff
(98.2 %id)
BG545364 lung .a 57 to 789 1 to 730       730/730
(100 %)
6 diff
(99.2 %id)
BC012593 Brain, primitive neuroectodermal .a 58 to 1372 5 to 1319 exact tiling clone, available from MGC, AAA   1315/1315
(100 %)
2 diff
(99.9 %id)
NM_005525.2   .a 58 to 1462 1 to 1405 exact RefSeq,   1405/1405
(100 %)
0 diff
(100 %id)
DA417923 thalamus .a 59 to 602 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BJ993595 hepatoblastoma .a 60 to 526 1 to 467       467/467
(100 %)
0 diff
(100 %id)
BP339122 Spleen .a 60 to 563 1 to 504       504/582
(86 %)
10 diff
(98.3 %id)
AK313973 liver, tumor tissue .a 61 to 1033 1 to 973 exact     973/973
(100 %)
0 diff
(100 %id)
DB188544 liver, tumor tissue .a 62 to 646 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
TI_57174046   .a 64 to 766 24 to 725       702/725
(96 %)
9 diff
(98.8 %id)
BE439658 Trabecular meshwork .a 65 to 531 1 to 467       467/468
(99 %)
1 diff
(99.8 %id)
BX380205 Placenta Cot 25-normalized .a 70 to 680 1 to 614       614/614
(100 %)
17 diff
(97.3 %id)
BI825901 brain, medulla .a 70 to 766 1 to 695       695/695
(100 %)
4 diff
(99.5 %id)
BG696304 skin .a 71 to 954 1 to 885       885/896
(98 %)
14 diff
(98.5 %id)
CR618163 Placenta Cot 25-normalized .a 74 to 1347 1 to 1274 exact tiling clone,   1274/1274
(100 %)
0 diff
(100 %id)
BX335991 Placenta Cot 25-normalized .a 74 to 702 1 to 629   fully sequenced,   629/629
(100 %)
0 diff
(100 %id)
BG674813 skin .a 76 to 1030 1 to 948       948/953
(99 %)
23 diff
(97.6 %id)
CD515061 White Matter .a 76 to 959 1 to 884       884/885
(99 %)
8 diff
(99.1 %id)
BG741370 skin .a 77 to 890 1 to 815       815/816
(99 %)
5 diff
(99.4 %id)
CF597556 ovary .a 79 to 609 1 to 538       538/1160
(46 %)
18 diff
(98.5 %id)
BI828429 brain, medulla .a 80 to 782 1 to 701       701/702
(99 %)
5 diff
(99.3 %id)
TI_57175199   .a 80 to 782 29 to 729       701/730
(96 %)
11 diff
(98.5 %id)
CD518210 White Matter .a 81 to 976 8 to 904       897/904
(99 %)
10 diff
(98.9 %id)
AV651512 corresponding non cancerous liver tissue .a 83 to 747 1 to 665     Submitted on the opposite strand 665/665
(100 %)
10 diff
(98.5 %id)
DR003993 Liver .a 83 to 747 19 to 682       664/682
(97 %)
6 diff
(99.2 %id)
BM906213 ovary (pool of 3) .a 87 to 675 5 to 596       592/1230
(48 %)
15 diff
(98.8 %id)
CR609467 Placenta Cot 25-normalized .a 89 to 1333 1 to 1245 exact     1245/1245
(100 %)
0 diff
(100 %id)
BG622296 placenta .a 90 to 819 1 to 731       731/743
(98 %)
27 diff
(96.4 %id)
BG742128 skin .a 93 to 897 1 to 804       804/806
(99 %)
4 diff
(99.6 %id)
CB163628 Liver .a 93 to 735 1 to 643       643/643
(100 %)
0 diff
(100 %id)
CD516243 White Matter .a 95 to 1003 1 to 918       918/926
(99 %)
18 diff
(98.1 %id)
CF597224 ovary .a 96 to 803 1 to 716       716/740
(96 %)
16 diff
(97.9 %id)
BG741309 skin .a 97 to 852 1 to 754       754/754
(100 %)
4 diff
(99.5 %id)
CB990937 placenta, pre-eclamptic placenta .a 97 to 876 26 to 806       781/806
(96 %)
11 diff
(98.7 %id)
CF597226 ovary .a 99 to 845 1 to 750       750/750
(100 %)
9 diff
(98.8 %id)
BX345837 Placenta Cot 25-normalized .a 100 to 702 11 to 613   fully sequenced,   603/613
(98 %)
8 diff
(98.7 %id)
TI_57215960   .a 102 to 890 29 to 817       789/828
(95 %)
15 diff
(98.2 %id)
BI755046 brain .a 103 to 890 1 to 788       788/799
(98 %)
10 diff
(98.8 %id)
BE439403 Trabecular meshwork .a 109 to 786 1 to 674       674/674
(100 %)
8 diff
(98.9 %id)
AA150289 uterus .a 122 to 507 1 to 386       386/387
(99 %)
1 diff
(99.8 %id)
AA150794 uterus .a 122 to 400 1 to 279       279/423
(65 %)
2 diff
(99.6 %id)
CF127979 Chondrosarcoma Lung Metastasis cell lines, lung .a 122 to 826 1 to 705       705/705
(100 %)
4 diff
(99.5 %id)
TI_154193681   .a 122 to 990 51 to 913       863/1021
(84 %)
16 diff
(98.5 %id)
BX335990 Placenta Cot 25-normalized .a 641 to 1347 709 to 1   fully sequenced,   709/709
(100 %)
4 diff
(99.5 %id)
BX345836 Placenta Cot 25-normalized .a 641 to 1327 694 to 7   fully sequenced,   688/694
(99 %)
0 diff
(100 %id)
AA152262 uterus .a 925 to 1365 447 to 4       444/447
(99 %)
0 diff
(100 %id)
AA150670 uterus .a 943 to 1364 423 to 1       423/423
(100 %)
3 diff
(99.3 %id)
AW137482   .b 1 to 558 558 to 1   tiling clone,   558/558
(100 %)
2 diff
(99.7 %id)
DN994061 brain, whole brain .b 482 to 1081 1 to 603       603/603
(100 %)
5 diff
(99.2 %id)
CF597174 ovary .b 492 to 1228 1 to 747       746/759
(98 %)
18 diff
(97.7 %id)
BG619051 placenta .b 501 to 1101 1 to 601   tiling clone,   601/604
(99 %)
1 diff
(99.9 %id)
NM_181755.1   .b 520 to 1934 1 to 1415 exact RefSeq,   1415/1415
(100 %)
0 diff
(100 %id)
BF172625 blood .b 545 to 672 1 to 130       130/130
(100 %)
4 diff
(97.0 %id)
AA045613 uterus .b 597 to 979 1 to 387       387/395
(97 %)
7 diff
(98.3 %id)
BX284044 skin .b 598 to 958 1 to 362       362/366
(98 %)
2 diff
(99.5 %id)
BG674247 skin .b 598 to 1467 1 to 872       872/872
(100 %)
8 diff
(99.1 %id)
BX446543 placenta .b 599 to 1181 1 to 583   fully sequenced,   583/583
(100 %)
5 diff
(99.2 %id)
CR594617 Placenta Cot 25-normalized .b 599 to 1815 1 to 1217 exact     1217/1217
(100 %)
0 diff
(100 %id)
CR603384 placenta .b 599 to 1875 1 to 1277 exact tiling clone,   1277/1277
(100 %)
0 diff
(100 %id)
CR622047 Placenta Cot 25-normalized .b 599 to 1848 1 to 1250 exact     1250/1250
(100 %)
0 diff
(100 %id)
BX377464 Placenta Cot 25-normalized .b 599 to 1549 1 to 940 L279S Y280T S281H T282E S283L ...     940/940
(100 %)
12 diff
(98.8 %id)
BX336163 Placenta Cot 25-normalized .b 599 to 1318 1 to 720   fully sequenced,   720/720
(100 %)
0 diff
(100 %id)
BX380717 Placenta Cot 25-normalized .b 599 to 1174 1 to 576   fully sequenced,   576/576
(100 %)
0 diff
(100 %id)
BG740525 skin .b 599 to 1251 1 to 670       670/670
(100 %)
28 diff
(95.9 %id)
BG742376 skin .b 600 to 1228 1 to 631       631/631
(100 %)
2 diff
(99.7 %id)
BG698667 skin .b 605 to 1395 1 to 790       790/793
(99 %)
9 diff
(98.9 %id)
CV028010 mixed .b 627 to 1152 1 to 526       526/541
(97 %)
24 diff
(95.6 %id)
AV657367 corresponding non cancerous liver tissue .b 676 to 1037 1 to 362     Submitted on the opposite strand 362/362
(100 %)
0 diff
(100 %id)
BG565704 Liver .b 682 to 1468 1 to 791       791/791
(100 %)
22 diff
(97.3 %id)
BG697623 skin .b 686 to 1391 1 to 706       706/707
(99 %)
4 diff
(99.5 %id)
CB164720 Liver .b 692 to 1279 1 to 588       588/588
(100 %)
0 diff
(100 %id)
AA367198 Pancreas .b 712 to 905 1 to 194       194/194
(100 %)
0 diff
(100 %id)
AW955839   .b 713 to 945 1 to 233       233/233
(100 %)
0 diff
(100 %id)
BX377462 Placenta Cot 25-normalized .b 722 to 1812 1079 to 1       1079/1080
(99 %)
26 diff
(97.6 %id)
BP422297 small intestine .b 908 to 1434 1 to 527     Submitted on the opposite strand 527/527
(100 %)
3 diff
(99.5 %id)
AA029004 uterus .b 993 to 1164 1 to 172       172/177
(97 %)
1 diff
(99.5 %id)
AA121470.
matches multiple genes
uterus .b 995 to 1449 1 to 457     also hits gene TSEN34 457/458
(99 %)
7 diff
(98.5 %id)
BX380716 Placenta Cot 25-normalized .b 1113 to 1848 736 to 1   fully sequenced,   736/736
(100 %)
1 diff
(99.9 %id)
N75182 multiple sclerosis lesions .b 1126 to 1525 1 to 408   fully sequenced,   408/408
(100 %)
3 diff
(99.3 %id)
BX433645 placenta .b 1151 to 1814 713 to 53   fully sequenced,   661/713
(92 %)
0 diff
(100 %id)
BG055093 Prostate .b 1179 to 1930 751 to 1       751/751
(100 %)
10 diff
(98.7 %id)
BQ000155 Fibrosarcoma .b 1205 to 1844 658 to 19   AAA   640/640
(100 %)
0 diff
(100 %id)
CA443473 Fibrosarcoma .b 1211 to 1846 652 to 17   AAA   636/636
(100 %)
0 diff
(100 %id)
CB528427 Aveolar Macrophage, lung .b 1211 to 1836 644 to 19   AAA   626/626
(100 %)
0 diff
(100 %id)
CB530075 Aveolar Macrophage, lung .b 1215 to 1933 734 to 19   tiling clone, AAA   716/716
(100 %)
3 diff
(99.6 %id)
BF887456 testis_normal .b 1221 to 1543 1 to 326       326/326
(100 %)
13 diff
(96.1 %id)
W03671 liver and spleen .b 1235 to 1528 1 to 296       296/296
(100 %)
4 diff
(98.7 %id)
BX336162 Placenta Cot 25-normalized .b 1257 to 1810 556 to 5   fully sequenced,   552/556
(99 %)
0 diff
(100 %id)
AA042954 uterus .b 1270 to 1537 1 to 273   fully sequenced,   273/273
(100 %)
0 diff
(100 %id)
BQ000936 lung, Metastatic Chondrosarcoma .b 1274 to 1836 581 to 19   AAA   563/563
(100 %)
0 diff
(100 %id)
BM999524 Fibrosarcoma .b 1274 to 1905 647 to 17   AAA   631/631
(100 %)
1 diff
(99.9 %id)
AI200207 placenta .b 1287 to 1837 555 to 5       551/555
(99 %)
0 diff
(100 %id)
CF128712 Chondrosarcoma Lung Metastasis cell lines, lung .b 1295 to 1846 1 to 553   AAA   553/553
(100 %)
2 diff
(99.7 %id)
TI_154194859   .b 1295 to 1846 51 to 603   AAA   553/553
(100 %)
2 diff
(99.7 %id)
AI911395 pooled .b 1299 to 1844 566 to 22   AAA   545/555
(98 %)
29 diff
(94.8 %id)
AA029076 uterus .b 1301 to 1663 1 to 374   fully sequenced,   374/374
(100 %)
5 diff
(98.7 %id)
AV661843 corresponding non cancerous liver tissue .b 1326 to 1913 605 to 26       580/675
(85 %)
0 diff
(100 %id)
AI139163 uterus .b 1338 to 1844 517 to 11   AAA   507/507
(100 %)
0 diff
(100 %id)
AI139728 uterus .b 1341 to 1844 504 to 1       504/504
(100 %)
2 diff
(99.7 %id)
AA894534 pooled germ cell tumors .b 1349 to 1844 498 to 1       498/498
(100 %)
6 diff
(98.8 %id)
AW974221   .b 1353 to 1909 556 to 1     Submitted on the opposite strand 556/583
(95 %)
5 diff
(99.2 %id)
AI373859 uterus .b 1353 to 1836 484 to 1       484/484
(100 %)
0 diff
(100 %id)
AI148464 uterus .b 1356 to 1848 495 to 3       493/495
(99 %)
0 diff
(100 %id)
AI148718 placenta .b 1366 to 1848 491 to 8       484/491
(98 %)
0 diff
(100 %id)
AI095846 uterus .b 1374 to 1837 467 to 4       464/467
(99 %)
0 diff
(100 %id)
AI373945 uterus .b 1377 to 1845 469 to 1       469/469
(100 %)
23 diff
(95.1 %id)
AI306558 carcinoid, lung .b 1378 to 1837 460 to 1       460/461
(99 %)
5 diff
(99.0 %id)
CD364539 Alveolar Macrophage, lung .b 1385 to 1933 566 to 19   AAA   548/548
(100 %)
1 diff
(99.9 %id)
BM994393 lung, Metastatic Chondrosarcoma .b 1388 to 1933 563 to 19   AAA   545/545
(100 %)
1 diff
(99.9 %id)
AA028910 uterus .b 1389 to 1848 472 to 8       465/477
(97 %)
0 diff
(100 %id)
BF510202   .b 1402 to 1910 526 to 18   AAA   509/509
(100 %)
1 diff
(99.9 %id)
AI990031 pooled germ cell tumors .b 1443 to 1911 469 to 1       469/469
(100 %)
2 diff
(99.6 %id)
AA121298.
matches multiple genes
uterus .b 1454 to 1845 396 to 1     also hits gene TSEN34 396/404
(98 %)
8 diff
(98.1 %id)
BQ005256 Chondrosarcoma, Left Pelvis .b 1464 to 1910 465 to 19   AAA   447/447
(100 %)
0 diff
(100 %id)
BU753891 placenta .b 1477 to 1836 377 to 18   AAA   360/360
(100 %)
0 diff
(100 %id)
N59147 multiple sclerosis lesions .b 1495 to 1849 359 to 1   fully sequenced,   359/359
(100 %)
5 diff
(98.7 %id)
AA044381 uterus .b 1507 to 1836 344 to 1   fully sequenced,   344/344
(100 %)
14 diff
(96.0 %id)
AI244924 Kidney .b 1520 to 1844 340 to 15   AAA   326/326
(100 %)
1 diff
(99.7 %id)
BG927674 cartilage .b 1522 to 1836 88 to 402   AAA   315/332
(94 %)
0 diff
(100 %id)
AI972602 Prostate .b 1546 to 1818 273 to 1       273/273
(100 %)
0 diff
(100 %id)
BQ013947 placenta .b 1550 to 1836 304 to 18   AAA   287/287
(100 %)
0 diff
(100 %id)
AI424373 Prostate .b 1555 to 1934 381 to 2       380/381
(99 %)
0 diff
(100 %id)
AA577344 colon, colon tumor RER+ .b 1588 to 1911 324 to 1       324/324
(100 %)
1 diff
(99.7 %id)
AA045614 uterus .b 1607 to 1836 231 to 1       231/238
(97 %)
1 diff
(99.6 %id)
N80144 liver and spleen .b 1623 to 1933 311 to 1       311/381
(81 %)
0 diff
(100 %id)
AA029077 uterus .b 1633 to 1847 219 to 1   fully sequenced,   219/219
(100 %)
1 diff
(99.6 %id)
AV655967 corresponding non cancerous liver tissue .c 1 to 601 1 to 601 F111X K120X S168X tiling clone, Submitted on the opposite strand 601/603
(99 %)
1 diff
(99.9 %id)
AV683659 hepatocellular carcinoma .c 4 to 337 1 to 330       330/348
(94 %)
3 diff
(99.2 %id)
AV691172 hepatocellular carcinoma .c 4 to 378 1 to 368       368/374
(98 %)
6 diff
(98.4 %id)
AV650340 corresponding non cancerous liver tissue .c 4 to 353 1 to 350     Submitted on the opposite strand 350/350
(100 %)
0 diff
(100 %id)
AV650588 corresponding non cancerous liver tissue .c 4 to 375 1 to 372     Submitted on the opposite strand 372/372
(100 %)
0 diff
(100 %id)
AV650625 corresponding non cancerous liver tissue .c 4 to 355 1 to 352     Submitted on the opposite strand 352/352
(100 %)
0 diff
(100 %id)
AV650206 corresponding non cancerous liver tissue .c 17 to 483 9 to 467     Submitted on the opposite strand 459/623
(73 %)
17 diff
(97.3 %id)
AA151025 uterus .d 1 to 479 1 to 481 L88S I89D R90Q N91K P92S ... tiling clone,   481/481
(100 %)
3 diff
(99.4 %id)
AA150918 uterus .d 479 to 687 210 to 2   tiling clone,   209/210
(99 %)
0 diff
(100 %id)
BF172095 blood .e 1 to 237 1 to 227 K2E L5C F6S E7K I8S ... tiling clone,   227/235
(96 %)
17 diff
(92.8 %id)
AV689794 hepatocellular carcinoma Gene HSD11B1, variant not shown         This clone was ignored    
AV650949 corresponding non cancerous liver tissue Gene HSD11B1, variant not shown         Submitted on the opposite strand    
AV651100 corresponding non cancerous liver tissue Gene HSD11B1, variant not shown         Submitted on the opposite strand    
AV655945 corresponding non cancerous liver tissue Gene HSD11B1, variant not shown         Submitted on the opposite strand    
AV661865 corresponding non cancerous liver tissue Gene HSD11B1, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand    
TI_227713573   Gene HSD11B1, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI