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Gene HSCBTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
81 supporting clones for gene HSCB back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC000004 Placenta, choriocarcinoma .a 1 to 1089 9 to 1097 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 1089/1089
(100 %)
0 diff
(100 %id)
BE279981 choriocarcinoma, placenta .a 21 to 647 1 to 634   available from MGC,   634/727
(87 %)
22 diff
(97.0 %id)
AW250733 lung, small cell carcinoma .a 22 to 580 10 to 568     Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 559/568
(98 %)
6 diff
(99.0 %id)
NM_172002.3   .a 25 to 1089 1 to 1065 exact RefSeq, AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 1065/1065
(100 %)
0 diff
(100 %id)
TI_44459103   .a 26 to 819 82 to 882 N223T I224Y E225R E226R K227N ...     801/932
(85 %)
19 diff
(98.0 %id)
BC065569 Eye, retinoblastoma .a 29 to 1089 1 to 1061 exact available from MGC, AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 1061/1061
(100 %)
0 diff
(100 %id)
BU195420 eye, retinoblastoma .a 30 to 882 1 to 863 K212R     863/875
(98 %)
11 diff
(98.8 %id)
CR456462   .a 34 to 780 1 to 747 exact     747/747
(100 %)
0 diff
(100 %id)
BI518530 leukocyte .a 36 to 819 1 to 791 N223T I224Y E225R E226R K227N ...     791/841
(94 %)
13 diff
(98.5 %id)
N24330 melanocyte .a 38 to 577 1 to 543       541/543
(99 %)
27 diff
(95.1 %id)
AY191719   .a 52 to 822 1 to 771 N43S AAA   771/771
(100 %)
1 diff
(99.9 %id)
BQ430738 large cell carcinoma, lung .a 61 to 857 26 to 820 W2G R3G R5S A6R A8F ...     795/821
(96 %)
2 diff
(99.8 %id)
DR432378 mixed .a 61 to 746 1 to 688       688/710
(96 %)
18 diff
(97.5 %id)
DR433270 mixed .a 61 to 755 1 to 695       695/695
(100 %)
5 diff
(99.3 %id)
DR432404 mixed .a 61 to 767 1 to 705       705/705
(100 %)
8 diff
(98.9 %id)
DR433175 mixed .a 61 to 772 1 to 712       712/717
(99 %)
6 diff
(99.2 %id)
DR432900 mixed .a 61 to 772 1 to 712       712/717
(99 %)
6 diff
(99.2 %id)
DR432782 mixed .a 61 to 762 1 to 698       698/698
(100 %)
10 diff
(98.6 %id)
CV025750 mixed .a 66 to 668 1 to 602       602/602
(100 %)
3 diff
(99.6 %id)
BE782421 eye, retinoblastoma .a 72 to 835 1 to 760       760/798
(95 %)
22 diff
(97.3 %id)
BE615999 adenocarcinoma, Pancreas .a 75 to 931 1 to 860       860/1088
(79 %)
56 diff
(94.9 %id)
AI823863 2 pooled tumors (clear cell type), Kidney .a 82 to 447 458 to 93   AAA   366/444
(82 %)
0 diff
(100 %id)
AI831736 2 pooled tumors (clear cell type), Kidney .a 125 to 447 419 to 97   AAA   323/401
(80 %)
0 diff
(100 %id)
AI739537 colon, colon tumor, RER+ .a 274 to 822 549 to 1       549/549
(100 %)
0 diff
(100 %id)
AI796137 Kidney .a 279 to 816 551 to 14   AAA   538/538
(100 %)
0 diff
(100 %id)
TI_1948085141   .a 301 to 772 601 to 126       476/1309
(36 %)
13 diff
(99.1 %id)
AI091767 heart .a 369 to 819 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AA884415 pooled .a 396 to 817 425 to 3       423/428
(98 %)
2 diff
(99.6 %id)
AA923392 pooled .a 396 to 816 420 to 1       420/420
(100 %)
2 diff
(99.6 %id)
AW206549   .a 469 to 834 384 to 19   AAA   366/366
(100 %)
0 diff
(100 %id)
BI000640 head_normal .a 471 to 844 374 to 1       374/374
(100 %)
3 diff
(99.2 %id)
AI024164   .a 564 to 817 259 to 7       253/259
(97 %)
1 diff
(99.7 %id)
AI203804 lung .a 594 to 815 222 to 1       222/222
(100 %)
0 diff
(100 %id)
AW246879 lung, small cell carcinoma .a 660 to 1110 461 to 11   AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 451/451
(100 %)
1 diff
(99.8 %id)
BM811398 amelanotic melanoma, cell line, skin .b 1 to 782 1 to 797 exact tiling clone,   797/1085
(73 %)
24 diff
(97.8 %id)
CR979598 T-Lymphocytes .c 1 to 858 1 to 858 exact tiling clone,   858/858
(100 %)
1 diff
(99.9 %id)
BE327697 carcinoid, lung .c 119 to 620 505 to 4       502/505
(99 %)
0 diff
(100 %id)
BM852301 Ascites, stomach .c 135 to 496 1 to 362       362/362
(100 %)
2 diff
(99.5 %id)
AW341195 carcinoid, lung .c 180 to 617 444 to 7       438/444
(98 %)
1 diff
(99.8 %id)
BF447784 carcinoid, lung .c 206 to 620 423 to 9       415/423
(98 %)
9 diff
(97.9 %id)
TI_154130804   .d 1 to 800 893 to 97 W2V V12X F15X W16G P17R ... tiling clone, AAA   797/942
(84 %)
12 diff
(98.8 %id)
DN993841 brain, whole brain .d 20 to 663 9 to 652 exact tiling clone,   644/652
(98 %)
6 diff
(99.1 %id)
CB046828 2 pooled tumors (clear cell type), Kidney .d 280 to 800 10 to 530   AAA   521/530
(98 %)
6 diff
(98.9 %id)
TI_153988277   .d 280 to 800 640 to 94   AAA   487/581
(83 %)
21 diff
(96.4 %id)
AI141716 pooled germ cell tumors .d 291 to 800 520 to 11   AAA   510/510
(100 %)
0 diff
(100 %id)
DB468658 hippocampus .e 1 to 171 1 to 171   tiling clone,   171/171
(100 %)
4 diff
(97.7 %id)
BQ054405 lymph, lymphoma, cell line .e 2 to 956 1 to 957 exact     957/1028
(93 %)
32 diff
(96.9 %id)
BQ642066 lymph, lymphoma, cell line .e 2 to 859 1 to 864 exact     864/916
(94 %)
32 diff
(96.6 %id)
BQ642442 lymph, lymphoma, cell line .e 2 to 850 1 to 854 exact     854/912
(93 %)
13 diff
(98.6 %id)
AA346978 heart .e 5 to 124 1 to 120       120/120
(100 %)
2 diff
(98.4 %id)
CN346763 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 7 to 776 9 to 778 exact tiling clone,   770/778
(98 %)
7 diff
(99.2 %id)
CD623910   .e 9 to 116 1 to 107       107/117
(91 %)
6 diff
(94.9 %id)
BP426190 small intestine .e 26 to 413 14 to 401     Submitted on the opposite strand 388/415
(93 %)
9 diff
(97.9 %id)
BI053948 placenta_normal .e 103 to 207 1 to 105       105/108
(97 %)
7 diff
(93.6 %id)
AA938699 2 pooled tumors (clear cell type), Kidney .e 181 to 375 338 to 144   AAA   195/322
(60 %)
0 diff
(100 %id)
BE856024 Prostate .e 205 to 671 481 to 15   AAA   467/467
(100 %)
4 diff
(99.2 %id)
AI826906 normal prostate, Prostate .e 256 to 671 430 to 15   AAA   416/416
(100 %)
0 diff
(100 %id)
BG208343   .e 466 to 654 1 to 185       185/197
(93 %)
8 diff
(96.0 %id)
DB536041 hippocampus .e 513 to 965 1 to 453   tiling clone, Submitted on the opposite strand 453/454
(99 %)
4 diff
(99.2 %id)
H93680 placenta .e 585 to 920 337 to 1       337/337
(100 %)
1 diff
(99.8 %id)
AA804625 germinal center B cell .e 598 to 958 374 to 14   AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 361/361
(100 %)
0 diff
(100 %id)
AW770173 lymph node, lymphoma, follicular mixed small and largecell .e 685 to 947 265 to 1       265/265
(100 %)
2 diff
(99.3 %id)
BU069809 insulinoma, Pancreas .e 772 to 965 210 to 17   AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 194/194
(100 %)
0 diff
(100 %id)
DR978026 brain .e 786 to 936 1 to 150   AAA Submitted on the opposite strand 150/150
(100 %)
2 diff
(98.7 %id)
BU584017 synovium .f-u 1 to 414 1 to 414 exact tiling clone,   414/418
(99 %)
1 diff
(99.8 %id)
BG696148 skin .g 1 to 850 1 to 846 W16G P17R T18Q V20F R22E ... tiling clone,   846/944
(89 %)
31 diff
(96.8 %id)
BU857730 adenocarcinoma, cell line, breast .g 293 to 1038 1 to 746   tiling clone, AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 746/748
(99 %)
3 diff
(99.6 %id)
BU858060 adenocarcinoma, cell line, breast .g 293 to 1013 1 to 727       727/830
(87 %)
11 diff
(98.7 %id)
BU856850 adenocarcinoma, cell line, breast .g 472 to 1044 1 to 573   AAA Possibly primed on the genome, locally A rich (20/25 A in genome downstream of last aligned base) 573/573
(100 %)
10 diff
(98.3 %id)
AW732206 lung, small cell carcinoma .g 475 to 1046 569 to 1   tiling clone,   569/569
(100 %)
4 diff
(99.3 %id)
BF686324 leiomyosarcoma cell line, uterus .h 1 to 829 1 to 830 L59* tiling clone,   830/1140
(72 %)
30 diff
(97.4 %id)
BP424693 small intestine .h 16 to 524 1 to 509 exact   Submitted on the opposite strand 504/509
(99 %)
2 diff
(99.7 %id)
AI948474 2 pooled tumors (clear cell type), Kidney .h 113 to 549 443 to 7 exact tiling clone,   437/443
(98 %)
0 diff
(100 %id)
DW414316 Liver .i 1 to 301 16 to 316   tiling clone,   301/316
(95 %)
6 diff
(98.2 %id)
BG572010 placenta .i 2 to 566 1 to 565 K26N E27R I28D E29* tiling clone,   565/864
(65 %)
5 diff
(99.5 %id)
AA338271 brain .j-u 1 to 341 1 to 341 exact tiling clone,   341/341
(100 %)
1 diff
(99.8 %id)
BI001180 head_normal .k-u 1 to 246 1 to 247 R10S N22D S31T M32H I33D ... tiling clone,   247/247
(100 %)
4 diff
(98.4 %id)
Z22583   .l-u 1 to 236 256 to 23 L9S C10V E11N Y12I Y13T ... tiling clone,   234/257
(91 %)
0 diff
(100 %id)
BX096842 lung Gene HSCB, variant not shown         This clone was ignored    
CU013301 Synthetic constructs Gene HSCB, variant not shown         This clone was ignored    
CU013013 Synthetic constructs Gene HSCB, variant not shown         This clone was ignored    
CA429123 Cell Line, Chondrosarcoma Gene HSCB, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j-u, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC