To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene HS3ST2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
91 supporting clones for gene HS3ST2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA253367 caudate nucleus .a 1 to 245 2 to 251   tiling clone, capped   250/250
(100 %)
5 diff
(98.0 %id)
DA900895   .a 34 to 668 2 to 638   capped   637/640
(99 %)
14 diff
(97.9 %id)
CB154642 brain .a 35 to 499 1 to 465       465/465
(100 %)
3 diff
(99.4 %id)
DA160670 amygdala .a 35 to 592 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA688026   .a 35 to 561 2 to 528   capped   527/527
(100 %)
4 diff
(99.3 %id)
DA693235   .a 35 to 537 2 to 504   capped   503/503
(100 %)
1 diff
(99.9 %id)
DA202908 brain .a 36 to 214 2 to 180   capped   179/179
(100 %)
2 diff
(98.9 %id)
DA518983 brain .a 36 to 518 2 to 484   capped   483/483
(100 %)
3 diff
(99.4 %id)
DA206027 brain .a 37 to 614 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA335409 hippocampus .a 37 to 626 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA386623 thalamus .a 37 to 625 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA526294 brain .a 37 to 512 2 to 477   capped   476/476
(100 %)
1 diff
(99.8 %id)
DA527922 brain .a 37 to 567 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DA901726   .a 37 to 540 2 to 506   capped   505/505
(100 %)
2 diff
(99.7 %id)
DA357974 subthalamic nucleus .a 38 to 542 2 to 507   capped   506/506
(100 %)
1 diff
(99.9 %id)
DA450869 tongue, tumor tissue .a 38 to 587 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA533897 brain .a 38 to 606 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA586104 lung .a 38 to 532 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DA685530   .a 38 to 547 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
DA689715   .a 38 to 570 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA697888   .a 38 to 616 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA776780 brain .a 38 to 623 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA819420   .a 38 to 520 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DA904263   .a 38 to 518 2 to 483   capped   482/482
(100 %)
1 diff
(99.8 %id)
DA819165   .a 40 to 537 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DA581050 lung .a 47 to 773 2 to 723   capped   722/725
(99 %)
6 diff
(99.2 %id)
AY359095   .a 48 to 2774 1 to 2727 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2727/2727
(100 %)
1 diff
(100.0 %id)
AK313463 hippocampus .a 75 to 1586 1 to 1512 T184A     1512/1512
(100 %)
2 diff
(99.9 %id)
DA308759 hippocampus .a 76 to 625 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AB209794 brain .a 358 to 1755 1 to 1399 T317N E318R S319I S320E L321P ...     1399/1399
(100 %)
2 diff
(99.9 %id)
AF105374 brain .a 411 to 2360 1 to 1950 exact AAA   1950/1950
(100 %)
4 diff
(99.8 %id)
AF105375 brain .a 411 to 2360 1 to 1950 exact AAA   1950/1950
(100 %)
0 diff
(100 %id)
NM_006043.1   .a 411 to 2360 1 to 1950 exact RefSeq, AAA   1950/1950
(100 %)
0 diff
(100 %id)
TI_891530131   .a 436 to 1479 1046 to 7     Submitted on the opposite strand 1040/1214
(85 %)
7 diff
(99.5 %id)
TI_891528271   .a 442 to 1556 37 to 1139     Submitted on the opposite strand 1103/1281
(86 %)
18 diff
(98.6 %id)
TI_891530124   .a 442 to 1120 685 to 7     Submitted on the opposite strand 679/1216
(55 %)
1 diff
(100.0 %id)
TI_891530125   .a 442 to 937 505 to 10     Submitted on the opposite strand 496/1225
(40 %)
0 diff
(100 %id)
TI_891530128   .a 443 to 1118 684 to 9     Submitted on the opposite strand 676/1181
(57 %)
1 diff
(100.0 %id)
TI_891530129   .a 443 to 937 506 to 14     Submitted on the opposite strand 493/1229
(40 %)
0 diff
(100 %id)
TI_891530127   .a 444 to 1479 1031 to 4     Submitted on the opposite strand 1028/1196
(85 %)
7 diff
(99.5 %id)
BC093734 Brain, cerebral cortex, PCR rescued clones .a 447 to 1600 1 to 1154 exact     1154/1154
(100 %)
0 diff
(100 %id)
BC093736 Brain, cerebral cortex, PCR rescued clones .a 448 to 1598 1 to 1151 exact     1151/1151
(100 %)
0 diff
(100 %id)
TI_891528272   .a 501 to 1606 1140 to 47       1094/1265
(86 %)
12 diff
(99.1 %id)
TI_891528280   .a 576 to 1615 1085 to 54     Submitted on the opposite strand 1032/1255
(82 %)
6 diff
(99.6 %id)
F07258 brain, total brain .a 794 to 1125 1 to 332       332/332
(100 %)
1 diff
(99.7 %id)
TI_891528299   .a 864 to 1615 1 to 750       750/1209
(62 %)
8 diff
(99.4 %id)
TI_57221164   .a 1604 to 2362 70 to 827   AAA   758/837
(90 %)
6 diff
(99.3 %id)
DB354395   .a 1772 to 2360 588 to 1       588/588
(100 %)
11 diff
(98.2 %id)
DB304063 brain .a 1796 to 2360 564 to 1       564/564
(100 %)
1 diff
(99.9 %id)
DB319134 lung .a 1809 to 2360 552 to 1       552/558
(98 %)
29 diff
(94.9 %id)
AW771995 Kidney .a 1944 to 2362 425 to 5       421/425
(99 %)
0 diff
(100 %id)
Z40365 brain, total brain .a 2067 to 2360 294 to 1       294/294
(100 %)
0 diff
(100 %id)
TI_153958301   .b-u 1 to 740 76 to 806   tiling clone,   731/997
(73 %)
47 diff
(95.3 %id)
TI_891528300   .b-u 364 to 957 9 to 599   tiling clone,   591/1122
(52 %)
5 diff
(99.6 %id)
AA668745 lung .b-u 372 to 839 1 to 468     Submitted on the opposite strand 468/468
(100 %)
2 diff
(99.6 %id)
BI197317 brain, neuroblastoma .b-u 696 to 1305 1 to 615       615/848
(72 %)
21 diff
(97.6 %id)
BU733221 eye, RPE and Choroid .b-u 731 to 1104 11 to 384   AAA Submitted on the opposite strand 374/384
(97 %)
6 diff
(98.5 %id)
CN294252 embryonic stem cells, cell lines H1, H7, andH9 .b-u 758 to 1255 1 to 498       498/498
(100 %)
0 diff
(100 %id)
BI756515 brain .b-u 776 to 1602 1 to 830       830/1037
(80 %)
9 diff
(99.2 %id)
TI_57216878   .b-u 776 to 1602 34 to 863       830/1070
(77 %)
9 diff
(99.2 %id)
BX399871 Placenta Cot 25-normalized .b-u 817 to 1674 869 to 12       858/869
(98 %)
0 diff
(100 %id)
BM707687 eye, RPE and Choroid .b-u 827 to 1118 292 to 1     Submitted on the opposite strand 292/292
(100 %)
0 diff
(100 %id)
BX446742 neuroblastoma .b-u 894 to 1702 1 to 809   AAA   809/809
(100 %)
17 diff
(97.9 %id)
BI756381 brain .b-u 946 to 1704 1 to 758   tiling clone,   758/784
(96 %)
6 diff
(99.3 %id)
CA440105 lung, Metastatic Chondrosarcoma .b-u 1065 to 1702 656 to 19   AAA   638/638
(100 %)
3 diff
(99.6 %id)
AF003830   .b-u 1079 to 1375 1 to 297       297/297
(100 %)
0 diff
(100 %id)
AW970486   .b-u 1132 to 1592 16 to 476       461/476
(96 %)
7 diff
(98.6 %id)
AW205210   .b-u 1214 to 1612 408 to 10       399/418
(95 %)
0 diff
(100 %id)
AI203288 pooled germ cell tumors .b-u 1215 to 1692 477 to 1       477/479
(99 %)
2 diff
(99.6 %id)
BM672904 eye, optic nerve .b-u 1219 to 1702 502 to 19   tiling clone, AAA   484/484
(100 %)
0 diff
(100 %id)
BF223852 carcinoid, lung .b-u 1245 to 1704 462 to 3       460/462
(99 %)
0 diff
(100 %id)
AA935694 carcinoid, lung .b-u 1247 to 1551 305 to 1       305/305
(100 %)
4 diff
(98.7 %id)
BE328042 carcinoid, lung .b-u 1247 to 1586 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
BE219665 carcinoid, lung .b-u 1264 to 1704 443 to 3       441/443
(99 %)
0 diff
(100 %id)
BE502792 carcinoid, lung .b-u 1271 to 1702 432 to 1       432/432
(100 %)
2 diff
(99.6 %id)
AA541256 colon .b-u 1278 to 1704 426 to 1       426/426
(100 %)
4 diff
(99.1 %id)
H28735 whole brain .b-u 1293 to 1704 427 to 8       420/429
(97 %)
0 diff
(100 %id)
AI342806 carcinoid, lung .b-u 1297 to 1702 406 to 1       406/406
(100 %)
0 diff
(100 %id)
BF529565 anaplastic oligodendroglioma with 1p/19qloss, brain .b-u 1388 to 1675 1 to 284   AAA   284/284
(100 %)
4 diff
(98.6 %id)
AW445165   .b-u 1437 to 1702 283 to 18   AAA   266/275
(96 %)
0 diff
(100 %id)
BE503871 carcinoid, lung .b-u 1592 to 1702 111 to 1       111/111
(100 %)
1 diff
(99.1 %id)
AL524731 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 1 to 861 1 to 857   tiling clone,   857/857
(100 %)
7 diff
(99.2 %id)
CR620513 Placenta Cot 25-normalized .c 264 to 2529 1 to 2266 exact tiling clone,   2266/2266
(100 %)
0 diff
(100 %id)
BX399872 Placenta Cot 25-normalized .c 264 to 1036 1 to 773 S70X S99X P115X R128G     773/773
(100 %)
8 diff
(99.0 %id)
BX329114 Placenta Cot 25-normalized .c 900 to 1827 930 to 1       930/930
(100 %)
16 diff
(98.3 %id)
BX348444 Placenta Cot 25-normalized .c 945 to 1842 1 to 892       892/892
(100 %)
30 diff
(96.7 %id)
BM127113 Islets of Langerhans, Pancreas .c 1050 to 1601 1 to 552       552/552
(100 %)
3 diff
(99.5 %id)
BM126545 Islets of Langerhans, Pancreas .c 1050 to 1610 1 to 561       561/561
(100 %)
5 diff
(99.2 %id)
BG911223 anaplastic oligodendroglioma with 1p/19qloss, brain .c 1063 to 1741 1 to 684       684/685
(99 %)
21 diff
(97.0 %id)
AL524730 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 1587 to 2455 908 to 39       870/908
(95 %)
0 diff
(100 %id)
BM126231 Islets of Langerhans, Pancreas .c 2060 to 2546 503 to 16   tiling clone, AAA   488/488
(100 %)
4 diff
(99.2 %id)
BX094096 whole brain Gene HS3ST2, variant not shown         This clone was ignored    
AI654820 pooled germ cell tumors Gene HS3ST2, variant not shown         This clone was ignored    
AI831517 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) Gene HS3ST2, variant not shown         This clone was ignored    
BM126801 Islets of Langerhans, Pancreas Gene HS3ST2, variant not shown         This clone was ignored    
CK818832 Islets of Langerhans, Pancreas Gene HS3ST2, variant not shown         This clone was ignored    
CK818833 Islets of Langerhans, Pancreas Gene HS3ST2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC