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Gene HRH1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
103 supporting clones for gene HRH1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP329292 rectum .a 1 to 577 5 to 581       581/581
(100 %)
5 diff
(99.2 %id)
NM_001098211.1   .a 1 to 4326 2 to 4327 exact RefSeq, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 4327/4327
(100 %)
0 diff
(100 %id)
DA372691 thalamus .a 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
BP234734 coronary artery .a 8 to 594 1 to 587   tiling clone,   587/587
(100 %)
4 diff
(99.4 %id)
DA435029 tongue, tumor tissue .a 9 to 225 2 to 218   capped   217/217
(100 %)
2 diff
(99.1 %id)
CB960117 Human Placenta, placenta .b 1 to 727 22 to 754   tiling clone,   733/788
(93 %)
24 diff
(97.0 %id)
CB990093 Human Placenta, placenta .b 1 to 171 22 to 192       171/225
(76 %)
11 diff
(95.2 %id)
CF995072 Human Placenta, placenta .b 1 to 595 22 to 618       597/949
(62 %)
24 diff
(97.5 %id)
BC060802 Placenta, normal .b 7 to 3453 1 to 3449 V308E tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3449/3449
(100 %)
9 diff
(99.8 %id)
NM_000861.3   .b 7 to 4412 1 to 4406 exact RefSeq, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 4406/4406
(100 %)
0 diff
(100 %id)
AK289412   .c 1 to 2080 1 to 2080 exact tiling clone,   2080/2080
(100 %)
2 diff
(100.0 %id)
DC300229   .c 1 to 515 1 to 515       515/515
(100 %)
1 diff
(99.9 %id)
NM_001098213.1   .c 1 to 4557 1 to 4557 exact RefSeq, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 4557/4557
(100 %)
0 diff
(100 %id)
DC299413   .c 3 to 566 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC425031   .c 3 to 565 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DC379952 placenta .c 146 to 867 1 to 723       723/734
(98 %)
4 diff
(99.5 %id)
DC419930 uterus .c 148 to 740 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BP253153 Kidney .c 150 to 728 1 to 579       579/579
(100 %)
4 diff
(99.4 %id)
DA538631 Kidney .c 306 to 729 141 to 564   capped   424/563
(75 %)
6 diff
(99.0 %id)
DB221192 trachea .c 306 to 732 140 to 566   capped   427/565
(75 %)
7 diff
(98.8 %id)
DA015024 adrenal gland .c 307 to 870 27 to 590   capped   564/589
(95 %)
6 diff
(99.0 %id)
AK292157 synovial membrane tissue from rheumatoidarthritis .c 307 to 2195 24 to 1912 G337V     1889/1912
(98 %)
6 diff
(99.7 %id)
AK312879 uterus .c 307 to 1806 25 to 1524 Y65H M90V T172A K281N     1500/1524
(98 %)
6 diff
(99.7 %id)
DA020869   .c 307 to 831 24 to 548   capped   525/547
(95 %)
6 diff
(99.0 %id)
DA247697 brain .c 307 to 862 27 to 582   capped   556/581
(95 %)
6 diff
(99.0 %id)
DA360712 subthalamic nucleus .c 307 to 842 24 to 559   capped   536/559
(95 %)
1 diff
(99.9 %id)
BP217464 caudate nucleus .c 307 to 868 19 to 582       564/582
(96 %)
6 diff
(99.0 %id)
DA601415   .c 307 to 862 20 to 575   tiling clone, capped   556/574
(96 %)
11 diff
(98.1 %id)
BP285815 lung .c 307 to 876 25 to 595       571/598
(95 %)
11 diff
(98.2 %id)
NM_001098212.1   .c 307 to 4557 27 to 4277 exact RefSeq, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 4251/4277
(99 %)
6 diff
(99.9 %id)
DA974708 synovial membrane tissue from rheumatioidarthritis .c 307 to 813 25 to 531   capped   507/530
(95 %)
6 diff
(98.9 %id)
DA978107 synovial membrane tissue from rheumatioidarthritis .c 307 to 840 27 to 560   capped   534/559
(95 %)
6 diff
(99.0 %id)
DA993244 synovial membrane tissue from rheumatioidarthritis .c 307 to 816 24 to 533   capped   510/532
(95 %)
9 diff
(98.4 %id)
DA995776 synovial membrane tissue from rheumatioidarthritis .c 307 to 825 24 to 542   capped   519/541
(95 %)
6 diff
(98.9 %id)
DR003845 Liver .c 307 to 1039 18 to 750       733/754
(97 %)
3 diff
(99.7 %id)
BP366267 lung .c 307 to 861 27 to 582       556/582
(95 %)
6 diff
(99.0 %id)
DB192480 ovary, tumor tissue .c 307 to 838 27 to 558   capped   532/557
(95 %)
6 diff
(99.0 %id)
DB225813 trachea .c 307 to 845 24 to 562   capped   539/561
(96 %)
6 diff
(99.0 %id)
DB250960 uterus .c 307 to 831 25 to 549   capped   525/548
(95 %)
6 diff
(99.0 %id)
DB251047 uterus .c 307 to 813 25 to 532   capped   508/531
(95 %)
6 diff
(98.9 %id)
CO959660 mixed .c 337 to 989 15 to 660       646/740
(87 %)
6 diff
(99.2 %id)
D28481 placenta .c 340 to 1993 1 to 1654 exact     1654/1654
(100 %)
0 diff
(100 %id)
AF026261 lens epithelium .c 343 to 1806 1 to 1464 exact     1464/1464
(100 %)
0 diff
(100 %id)
AY136743 lung .c 343 to 1806 1 to 1464 exact     1464/1464
(100 %)
1 diff
(100.0 %id)
Z34897 Human lung .c 343 to 2063 1 to 1721 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1721/1721
(100 %)
0 diff
(100 %id)
DB006884 cervix, tumor tissue .c 536 to 1099 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AW904938 nervous_normal .c 683 to 1016 345 to 12       334/345
(96 %)
0 diff
(100 %id)
CN387908 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 702 to 1286 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
CO959653 mixed .c 1055 to 1803 760 to 24       737/808
(91 %)
0 diff
(100 %id)
CX758329 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1101 to 1853 35 to 787     Submitted on the opposite strand 753/787
(95 %)
6 diff
(99.3 %id)
BU170773 epithelioid carcinoma, Pancreas .c 1230 to 2054 1 to 827       827/827
(100 %)
7 diff
(99.2 %id)
BQ014690 Chondrosarcoma, Left Pubic Bone .c 1266 to 2063 810 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 792/792
(100 %)
6 diff
(99.3 %id)
BX436453 thymus .c 1359 to 2082 1 to 724       724/964
(75 %)
1 diff
(99.9 %id)
AI925675 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 1366 to 2063 709 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 699/700
(99 %)
17 diff
(97.6 %id)
CA309435 Alveolar Macrophage, lung .c 1374 to 2069 710 to 13   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 698/698
(100 %)
2 diff
(99.8 %id)
BQ019585 Chondrosarcoma, Left Pubic Bone .c 1382 to 2063 700 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 682/682
(100 %)
0 diff
(100 %id)
CF147824 mixed .c 1559 to 2340 796 to 19     Submitted on the opposite strand 778/796
(97 %)
0 diff
(100 %id)
AI248171 liver and spleen .c 1571 to 2069 498 to 1       498/502
(99 %)
8 diff
(98.5 %id)
BF513144   .c 1617 to 2063 463 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 447/447
(100 %)
0 diff
(100 %id)
BX119311 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 1648 to 2063 430 to 15   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 416/416
(100 %)
0 diff
(100 %id)
AI122972 pooled .c 1657 to 2068 411 to 1       411/411
(100 %)
3 diff
(99.3 %id)
BP289004 lung .c 1824 to 2403 1 to 580       580/580
(100 %)
0 diff
(100 %id)
AI889049 anaplastic oligodendroglioma, brain .c 1876 to 2557 699 to 21   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 679/679
(100 %)
10 diff
(98.6 %id)
AI954670 pooled germ cell tumors .c 1970 to 2561 591 to 1       591/591
(100 %)
5 diff
(99.2 %id)
AI005319 pooled .c 2028 to 2558 531 to 1   tiling clone,   531/531
(100 %)
1 diff
(99.9 %id)
CB114530 Liver .c 2087 to 2687 1 to 601       601/601
(100 %)
2 diff
(99.7 %id)
CB115769 Liver .c 2087 to 2568 1 to 482       482/482
(100 %)
2 diff
(99.6 %id)
CB120001 Liver .c 2087 to 2500 1 to 414       414/414
(100 %)
1 diff
(99.8 %id)
AI565677 anaplastic oligodendroglioma, brain .c 2095 to 2559 465 to 1       465/465
(100 %)
0 diff
(100 %id)
AA373094 lung .c 2103 to 2344 1 to 242       242/242
(100 %)
0 diff
(100 %id)
AW951490   .c 2104 to 2746 1 to 642       642/643
(99 %)
18 diff
(97.3 %id)
CU451644 epidermis .c 2138 to 2734 613 to 17   tiling clone, Submitted on the opposite strand 597/618
(96 %)
0 diff
(100 %id)
DA680012   .c 2162 to 2656 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
BP330214 rectum .c 2163 to 2748 1 to 585       585/588
(99 %)
11 diff
(98.2 %id)
FN095319 breast carcinoma .c 2240 to 2335 93 to 1     Submitted on the opposite strand 93/93
(100 %)
3 diff
(96.8 %id)
BG287152 bladder, transitional cell papilloma, cell line .c 2397 to 3150 1 to 752       752/977
(76 %)
27 diff
(97.3 %id)
CD519236 White Matter .c 2489 to 3319 1 to 837   AAA   837/866
(96 %)
17 diff
(98.1 %id)
BQ718493 sympathetic trunk .c 2573 to 3424 12 to 877   tiling clone,   866/973
(89 %)
39 diff
(96.0 %id)
BE908331 epithelioid carcinoma, Pancreas .c 2635 to 3339 1 to 693       693/858
(80 %)
27 diff
(96.9 %id)
H05376 whole brain .c 2797 to 3217 1 to 437     Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 437/476
(91 %)
23 diff
(95.2 %id)
R16396 whole brain .c 2810 to 3133 1 to 328     Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 328/328
(100 %)
7 diff
(97.9 %id)
BX436452 thymus .c 2838 to 3552 730 to 14       717/730
(98 %)
0 diff
(100 %id)
AW003867 brain, glioblastoma (pooled) .c 3041 to 3590 550 to 1   tiling clone,   550/550
(100 %)
1 diff
(99.9 %id)
AA613545 colon, colon tumor RER+ .c 3158 to 3597 442 to 3       440/442
(99 %)
0 diff
(100 %id)
AI926322 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3212 to 3599 390 to 3       388/390
(99 %)
0 diff
(100 %id)
BG117156 adenocarcinoma, cell line, Liver .c 3273 to 4051 1 to 778       778/910
(85 %)
31 diff
(96.6 %id)
BU187066 epithelioid carcinoma, Pancreas .c 3455 to 4121 679 to 13   tiling clone, Submitted on the opposite strand 667/845
(78 %)
0 diff
(100 %id)
AA410933 ovarian tumor, ovary .c 3533 to 4066 1 to 533       533/533
(100 %)
5 diff
(99.1 %id)
BQ017843 Chondrosarcoma, Left Pubic Bone .c 3541 to 4116 594 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 576/576
(100 %)
0 diff
(100 %id)
AW085500 pooled .c 3624 to 4121 501 to 4       498/501
(99 %)
0 diff
(100 %id)
AW452821   .c 3667 to 4111 462 to 18   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 445/448
(99 %)
4 diff
(99.2 %id)
AW044630 pooled .c 3669 to 4114 450 to 5       446/450
(99 %)
0 diff
(100 %id)
AI203543 heart .c 3680 to 4116 437 to 1       437/437
(100 %)
0 diff
(100 %id)
AI742102 pooled .c 3774 to 4121 353 to 5       349/353
(98 %)
0 diff
(100 %id)
AA582697 Kidney, kidney tumor .c 3781 to 4112 343 to 12   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 332/332
(100 %)
0 diff
(100 %id)
BF507950   .c 3782 to 4116 352 to 18   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 335/337
(99 %)
5 diff
(98.6 %id)
BF476775 sympathetic trunk .c 3914 to 4110 200 to 4       197/200
(98 %)
0 diff
(100 %id)
H05322 whole brain .c 4089 to 4557 508 to 22   tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 487/492
(98 %)
26 diff
(94.8 %id)
R42338 whole brain .c 4219 to 4557 368 to 21   tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 348/349
(99 %)
10 diff
(97.2 %id)
BM905371 melanotic melanoma, skin .c 4282 to 4557 1 to 275   tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 275/275
(100 %)
1 diff
(99.7 %id)
BP420108 small intestine .d 1 to 506 1 to 506   tiling clone, Submitted on the opposite strand 506/506
(100 %)
1 diff
(99.9 %id)
BI333356 cervical carcinoma cell line, cervix .d 179 to 1032 1 to 858 Q130P Q131A P132A L133P R134Q ... tiling clone,   858/858
(100 %)
23 diff
(97.4 %id)
DA423922   .e 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)
2 diff
(99.7 %id)
DB073635 testis .f 1 to 541 2 to 542 exact tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
DA682942   .g 1 to 520 2 to 522 G43W tiling clone, capped   521/522
(99 %)
4 diff
(99.3 %id)
AW390202 stomach Gene HRH1, variant not shown         This clone was ignored    
BP270201 small intestine Gene HRH1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC