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Gene HPS3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
291 supporting clones for gene HPS3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AY033141   .a 1 to 3892 1 to 3891 exact tiling clone, AAA   3891/3891
(100 %)
2 diff
(100.0 %id)
NM_032383.3   .a 1 to 4451 1 to 4451 exact RefSeq,   4451/4451
(100 %)
0 diff
(100 %id)
BG709275 brain, hypothalamus .a 13 to 736 1 to 731       731/736
(99 %)
22 diff
(97.1 %id)
AW505392 lymph .a 25 to 227 1 to 203       203/203
(100 %)
8 diff
(96.1 %id)
DA511231 brain .a 27 to 571 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
AK291631 placenta .a 33 to 3527 8 to 3498 exact     3491/3498
(99 %)
10 diff
(99.8 %id)
DA852370 placenta .a 33 to 578 8 to 553   capped   546/552
(98 %)
5 diff
(99.1 %id)
BP312741 mammary gland .a 38 to 620 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA505289 brain .a 39 to 562 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
BM545682 ovary (pool of 3) .a 40 to 798 1 to 770       770/1058
(72 %)
22 diff
(98.0 %id)
DA220711 brain .a 42 to 594 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA321985 hippocampus .a 42 to 684 2 to 644   capped   643/643
(100 %)
0 diff
(100 %id)
DA433622 tongue, tumor tissue .a 42 to 597 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA437289 tongue, tumor tissue .a 42 to 629 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DA438336 tongue, tumor tissue .a 42 to 578 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA457053 tongue, tumor tissue .a 42 to 598 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DB062472 testis .a 42 to 574 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA336312 hippocampus .a 50 to 642 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
BP358288 mammary gland .a 53 to 635 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DA460317 tongue, tumor tissue .a 54 to 605 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA725861   .a 54 to 610 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA994873 synovial membrane tissue from rheumatioidarthritis .a 54 to 604 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB090883 testis .a 54 to 622 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB090889 testis .a 54 to 626 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA462264 tongue, tumor tissue .a 56 to 405 2 to 351   capped   350/351
(99 %)
2 diff
(99.5 %id)
BG722573 testis .a 56 to 710 1 to 653       653/653
(100 %)
8 diff
(98.8 %id)
DA093893 cerebellum .a 57 to 647 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA095063 cerebellum .a 57 to 613 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA318360 hippocampus .a 57 to 629 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA989895 synovial membrane tissue from rheumatioidarthritis .a 57 to 444 2 to 389   capped   388/388
(100 %)
0 diff
(100 %id)
DB144579 thymus .a 57 to 551 2 to 496   capped   495/495
(100 %)
2 diff
(99.6 %id)
DB209637 trachea .a 57 to 558 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DA248831 brain .a 62 to 648 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
BC040359 Lymph, lymphoma .a 64 to 3892 1 to 3829 exact available from MGC, AAA   3829/3829
(100 %)
4 diff
(99.9 %id)
BQ436637 embryonal carcinoma, cell line, testis .a 64 to 720 1 to 660       660/990
(66 %)
12 diff
(98.8 %id)
BG107069 lymph, lymphoma, cell line .a 65 to 724 1 to 661       661/974
(67 %)
15 diff
(98.5 %id)
DA722796   .a 65 to 613 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA455167 tongue, tumor tissue .a 66 to 584 2 to 521   capped   520/520
(100 %)
1 diff
(99.9 %id)
DB083020 testis .a 66 to 625 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB139158 thymus .a 66 to 358 2 to 295   capped   294/299
(98 %)
2 diff
(99.4 %id)
DB153445 thymus .a 66 to 665 2 to 602   capped   601/601
(100 %)
2 diff
(99.7 %id)
DB290811 uterus .a 66 to 648 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA939816 Spleen .a 67 to 641 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA121624 cerebellum .a 68 to 332 2 to 267   capped   266/266
(100 %)
1 diff
(99.7 %id)
DA123173 cerebellum .a 68 to 504 2 to 439   capped   438/438
(100 %)
1 diff
(99.8 %id)
DA241377 brain .a 68 to 639 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA440082 tongue, tumor tissue .a 68 to 646 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA454159 tongue, tumor tissue .a 68 to 642 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DB072747 testis .a 68 to 608 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB159614 thymus .a 68 to 650 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB163490 thymus .a 68 to 640 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB228432 trachea .a 68 to 628 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB228788 trachea .a 68 to 649 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB223869 trachea .a 69 to 624 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA196442 amygdala .a 70 to 644 2 to 576   capped   575/575
(100 %)
4 diff
(99.4 %id)
DA218866 brain .a 70 to 737 2 to 670   capped   669/669
(100 %)
1 diff
(99.9 %id)
DA324040 hippocampus .a 70 to 541 2 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DA337618 hippocampus .a 70 to 658 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA417262 thalamus .a 70 to 629 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA443604 tongue, tumor tissue .a 70 to 632 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA449508 tongue, tumor tissue .a 70 to 558 2 to 491   capped   490/490
(100 %)
2 diff
(99.6 %id)
DA480870   .a 70 to 608 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA489703 brain .a 70 to 537 2 to 470   capped   469/469
(100 %)
1 diff
(99.8 %id)
DA498565 brain .a 70 to 617 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB165324 thymus .a 70 to 444 2 to 376   capped   375/375
(100 %)
0 diff
(100 %id)
DB227680 trachea .a 70 to 637 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
CF135661 lymph .a 75 to 748 1 to 674       674/674
(100 %)
7 diff
(99.0 %id)
BI463041 testis .a 76 to 616 1 to 543       543/543
(100 %)
9 diff
(98.4 %id)
DA726853   .a 80 to 641 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB065974 testis .a 80 to 627 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
BI906869 leukocyte .a 82 to 911 1 to 826       826/827
(99 %)
13 diff
(98.5 %id)
BU153314 large cell carcinoma, lung .a 82 to 820 1 to 743       743/924
(80 %)
18 diff
(98.1 %id)
TI_57233341   .a 82 to 911 43 to 868       826/869
(95 %)
18 diff
(98.0 %id)
TI_154164150   .a 82 to 850 76 to 836       761/900
(84 %)
14 diff
(98.5 %id)
DA318424 hippocampus .a 85 to 642 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
TI_57178196   .a 86 to 850 28 to 791       764/791
(96 %)
8 diff
(99.0 %id)
DA311761 hippocampus .a 87 to 671 2 to 589   capped   588/588
(100 %)
5 diff
(99.2 %id)
DA408365 thalamus .a 88 to 564 2 to 478   capped   477/477
(100 %)
1 diff
(99.8 %id)
DA437324 tongue, tumor tissue .a 88 to 691 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
AW503645 lymph .a 88 to 607 1 to 520       520/520
(100 %)
5 diff
(99.1 %id)
CF136404 lymph .a 88 to 746 1 to 658       658/658
(100 %)
10 diff
(98.5 %id)
DB097075 testis .a 88 to 659 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
CN311326 embryonic stem cells, cell lines H1, H7, andH9 .a 90 to 783 1 to 700       700/700
(100 %)
9 diff
(98.8 %id)
BI770141 pooled lung and spleen .a 91 to 850 1 to 759       759/759
(100 %)
2 diff
(99.8 %id)
TI_154159615   .a 93 to 761 89 to 756       668/669
(99 %)
12 diff
(98.3 %id)
TI_154165455   .a 93 to 850 78 to 834       757/759
(99 %)
12 diff
(98.5 %id)
DA461615 tongue, tumor tissue .a 105 to 689 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
CN311328 embryonic stem cells, cell lines H1, H7, andH9 .a 106 to 704 1 to 600       600/600
(100 %)
2 diff
(99.7 %id)
BX362603   .a 108 to 1024 1 to 917       917/917
(100 %)
2 diff
(99.8 %id)
CN311329 embryonic stem cells, cell lines H1, H7, andH9 .a 126 to 704 1 to 579       579/579
(100 %)
0 diff
(100 %id)
TI_1948087667   .a 135 to 1112 131 to 1112       982/1333
(73 %)
31 diff
(97.7 %id)
TI_1948087833   .a 135 to 946 132 to 942       811/1280
(63 %)
19 diff
(98.6 %id)
TI_1948088186   .a 135 to 770 135 to 774       640/1475
(43 %)
12 diff
(99.2 %id)
DR159134 human embryonic stem cells differentiated toan early endodermal cell type .a 136 to 857 1 to 722       722/722
(100 %)
0 diff
(100 %id)
CV024981 mixed .a 141 to 734 1 to 595       595/595
(100 %)
2 diff
(99.7 %id)
DA403568 thalamus .a 153 to 601 2 to 453   capped   452/454
(99 %)
4 diff
(99.2 %id)
CF136280 lymph .a 260 to 810 1 to 551       551/551
(100 %)
5 diff
(99.1 %id)
TI_154165261   .a 266 to 1007 79 to 828       750/799
(93 %)
25 diff
(96.9 %id)
BG261219 bladder, transitional cell papilloma, cell line .a 460 to 1208 1 to 745       745/745
(100 %)
23 diff
(97.0 %id)
CF136883 lymph .a 493 to 818 8 to 333       326/333
(97 %)
9 diff
(97.3 %id)
TI_154166146   .a 493 to 964 81 to 555       475/477
(99 %)
15 diff
(96.9 %id)
DA375084 thalamus .a 557 to 1111 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA478665   .a 563 to 1129 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
BC022062 Lymph, Burkitt lymphoma .a 578 to 3892 1 to 3315   tiling clone, available from MGC, AAA   3315/3315
(100 %)
2 diff
(100.0 %id)
TI_57148088   .a 579 to 1260 31 to 711       681/711
(95 %)
10 diff
(98.6 %id)
BI760253 pooled colon, kidney, stomach .a 582 to 1260 1 to 678       678/678
(100 %)
5 diff
(99.3 %id)
DA437868 tongue, tumor tissue .a 623 to 1174 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CN311331 embryonic stem cells, cell lines H1, H7, andH9 .a 656 to 1320 1 to 665       665/665
(100 %)
2 diff
(99.7 %id)
BX496147 Liver .a 660 to 1233 1 to 574       574/574
(100 %)
0 diff
(100 %id)
AW504180 lymph .a 667 to 1144 1 to 478       478/478
(100 %)
4 diff
(99.2 %id)
TI_154160284   .a 674 to 1226 87 to 639       553/553
(100 %)
0 diff
(100 %id)
FN059539 breast carcinoma .a 684 to 775 1 to 93       93/94
(98 %)
4 diff
(95.8 %id)
AW452550   .a 710 to 1200 11 to 501     Submitted on the opposite strand 491/501
(98 %)
6 diff
(98.9 %id)
AK056575 tongue .a 733 to 3892 1 to 3158   available from FLJ,   3158/3158
(100 %)
3 diff
(100.0 %id)
DA760802 tongue .a 734 to 1515 2 to 786   capped   785/791
(99 %)
11 diff
(98.7 %id)
CN311330 embryonic stem cells, cell lines H1, H7, andH9 .a 754 to 1348 1 to 596       596/597
(99 %)
2 diff
(99.7 %id)
BG163294 hypernephroma, cell line, Kidney .a 800 to 1538 1 to 735       735/908
(80 %)
11 diff
(98.8 %id)
W03536.
matches multiple genes
melanocyte .a 849 to 1298 1 to 444     also hits gene NEDD4L 444/448
(99 %)
13 diff
(97.1 %id)
BP353984   .a 869 to 1463 1 to 595       595/598
(99 %)
4 diff
(99.4 %id)
DB150113 thymus .a 869 to 1439 2 to 573   capped   572/574
(99 %)
2 diff
(99.7 %id)
DA950579 Spleen .a 941 to 1493 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
AI022594 parathyroid gland, parathyroid tumor .a 959 to 1303 346 to 1       346/346
(100 %)
1 diff
(99.8 %id)
CN311333 embryonic stem cells, cell lines H1, H7, andH9 .a 1014 to 1685 1 to 672       672/672
(100 %)
3 diff
(99.6 %id)
DB271529 uterus .a 1031 to 1573 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA737980   .a 1051 to 1898 2 to 850   capped   849/856
(99 %)
13 diff
(98.5 %id)
DA441636 tongue, tumor tissue .a 1146 to 1711 2 to 568   capped   567/567
(100 %)
4 diff
(99.3 %id)
DA769158 brain .a 1221 to 1746 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
AL832735 human cervix .a 1249 to 3890 1 to 2642   available from DKFZ, AAA   2642/2642
(100 %)
5 diff
(99.9 %id)
DA694139   .a 1286 to 1857 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA697017   .a 1286 to 1854 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA289986 hippocampus .a 1303 to 1890 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
N94121 liver and spleen .a 1369 to 1825 1 to 456       456/456
(100 %)
4 diff
(99.2 %id)
BI091876 cervix .a 1430 to 2134 1 to 703       703/703
(100 %)
8 diff
(98.9 %id)
DA087493 cerebellum .a 1435 to 1981 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
CR622327 B cells (Ramos cell line) Cot 25-normalized .a 1442 to 3863 1 to 2422       2422/2422
(100 %)
0 diff
(100 %id)
AL582946 B cells from Burkitt lymphoma .a 1442 to 2392 1 to 951       951/951
(100 %)
1 diff
(99.9 %id)
AL833878 melanoma (MeWo cell line) .a 1458 to 3890 1 to 2437   available from DKFZ, AAA   2437/2437
(100 %)
4 diff
(99.9 %id)
DA464626   .a 1480 to 2040 2 to 563   capped   560/562
(99 %)
1 diff
(99.9 %id)
CD655760 Embryonic Stem cells .a 1514 to 2320 12 to 815       804/818
(98 %)
14 diff
(98.3 %id)
AA091140   .a 1515 to 1662 1 to 149       149/151
(98 %)
5 diff
(96.7 %id)
DA730818   .a 1549 to 2367 2 to 827   capped   826/836
(98 %)
14 diff
(98.4 %id)
DA736836   .a 1562 to 2364 2 to 802   capped   801/801
(100 %)
7 diff
(99.2 %id)
TI_1948088012   .a 1629 to 2505 144 to 1023   fully sequenced,   879/1022
(86 %)
20 diff
(98.1 %id)
BP268020 thyroid .a 1665 to 2246 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP374838 umbilical cord .a 1665 to 2246 1 to 582       582/583
(99 %)
2 diff
(99.7 %id)
AA374183 lung .a 1668 to 1977 1 to 311       311/346
(89 %)
6 diff
(98.3 %id)
DA574685   .a 1761 to 2332 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
CN311332 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1810 to 2493 1 to 684       684/684
(100 %)
2 diff
(99.8 %id)
DN996978 breast cancer, Mammary gland (cancer tissue) .a 1841 to 2283 33 to 475       443/475
(93 %)
6 diff
(98.8 %id)
BC016901 Kidney, hypernephroma .a 1844 to 3892 1 to 2057   available from MGC, AAA   2057/2057
(100 %)
5 diff
(99.8 %id)
BG249519 hypernephroma, cell line, Kidney .a 1845 to 2538 1 to 682   available from MGC,   682/974
(70 %)
22 diff
(97.8 %id)
BI224589 cervical carcinoma cell line, cervix .a 1849 to 2620 34 to 807       774/807
(95 %)
15 diff
(98.2 %id)
DA374781 thalamus .a 1866 to 2404 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
BP263680 small intestine .a 2010 to 2591 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
CD638785 pooled .a 2152 to 2773 1 to 620       620/645
(96 %)
10 diff
(98.5 %id)
BX390992   .a 2180 to 3170 1 to 979       979/986
(99 %)
30 diff
(97.0 %id)
CD722142 eye, lacrimal gland .a 2205 to 2807 1 to 603       603/603
(100 %)
0 diff
(100 %id)
BE881946 leiomyosarcoma, uterus .a 2221 to 2936 1 to 722       722/807
(89 %)
29 diff
(96.5 %id)
R21301 whole brain .a 2230 to 2605 1 to 384       384/386
(99 %)
9 diff
(97.7 %id)
TI_1948087668   .a 2240 to 3154 1042 to 122       921/1372
(67 %)
27 diff
(98.1 %id)
TI_1948087834   .a 2240 to 3154 1032 to 121       912/1318
(69 %)
25 diff
(98.2 %id)
CN311327 embryonic stem cells, cell lines H1, H7, andH9 .a 2312 to 2705 1 to 395       395/395
(100 %)
3 diff
(99.3 %id)
DA731677   .a 2319 to 3156 2 to 860   capped   857/885
(96 %)
32 diff
(96.4 %id)
DA737616   .a 2328 to 3156 2 to 827   capped   826/828
(99 %)
5 diff
(99.4 %id)
TI_1948088187   .a 2419 to 3154 862 to 123       740/1408
(52 %)
8 diff
(99.5 %id)
BE065652 breast .a 2451 to 2590 1 to 141       141/141
(100 %)
2 diff
(98.6 %id)
BE065653 breast .a 2451 to 2590 17 to 155       139/155
(89 %)
6 diff
(96.2 %id)
BE065654 breast .a 2451 to 2590 10 to 150       141/150
(94 %)
7 diff
(95.4 %id)
BE065655 breast .a 2451 to 2590 12 to 151       140/151
(92 %)
7 diff
(95.4 %id)
BE065658 breast .a 2451 to 2590 15 to 154       140/154
(90 %)
6 diff
(96.2 %id)
BE065659 breast .a 2451 to 2590 11 to 149       139/149
(93 %)
7 diff
(95.4 %id)
BE065660 breast .a 2451 to 2590 1 to 139       139/139
(100 %)
1 diff
(99.3 %id)
BE065661 breast .a 2451 to 2590 22 to 161       140/161
(86 %)
6 diff
(96.3 %id)
BE065663 breast .a 2451 to 2590 13 to 154       142/154
(92 %)
8 diff
(94.9 %id)
BE065665 breast .a 2451 to 2590 20 to 159       140/159
(88 %)
6 diff
(96.3 %id)
BE065666 breast .a 2451 to 2590 1 to 140       140/140
(100 %)
0 diff
(100 %id)
BE065669 breast .a 2451 to 2590 1 to 140       140/140
(100 %)
1 diff
(99.3 %id)
TI_1948088013   .a 2475 to 3154 800 to 121   fully sequenced,   680/800
(85 %)
6 diff
(99.3 %id)
BI860083 breast, mammary adenocarcinoma, cell line .a 2519 to 3328 1 to 816       816/847
(96 %)
26 diff
(97.0 %id)
TI_57189907   .a 2519 to 3328 50 to 865       816/847
(96 %)
26 diff
(97.0 %id)
BP339738 Spleen .a 2526 to 3104 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
AV709878 adrenal gland .a 2573 to 3197 1 to 625       625/631
(99 %)
2 diff
(99.7 %id)
FN054416 breast carcinoma .a 2643 to 2719 77 to 1     Submitted on the opposite strand 77/77
(100 %)
0 diff
(100 %id)
BU189413 melanotic melanoma, skin .a 2655 to 3554 1 to 909       909/910
(99 %)
34 diff
(96.3 %id)
BU958981 mixed (pool of 40 RNAs) .a 2668 to 3324 1 to 659       659/801
(82 %)
8 diff
(99.1 %id)
AW839165 leiomios .a 2672 to 3178 8 to 514       507/516
(98 %)
8 diff
(98.5 %id)
FN174004 breast carcinoma .a 2683 to 2757 8 to 82       75/82
(91 %)
7 diff
(91.5 %id)
CB148636 Liver .a 2705 to 3197 1 to 494       494/494
(100 %)
2 diff
(99.6 %id)
CK000555 mixed .a 2729 to 3491 8 to 764       757/771
(98 %)
14 diff
(98.2 %id)
BE513666 Burkitt lymphoma, lymph .a 2747 to 3441 1 to 686       686/767
(89 %)
22 diff
(97.2 %id)
BE567199 bladder, carcinoma, cell line .a 2749 to 3391 1 to 640       640/881
(72 %)
27 diff
(97.0 %id)
AW839157 leiomios .a 2820 to 3299 495 to 10       486/504
(96 %)
8 diff
(98.5 %id)
EH338309   .a 2820 to 2871 1 to 52       52/58
(89 %)
1 diff
(98.3 %id)
AL582897 B cells from Burkitt lymphoma .a 2861 to 3863 1004 to 1       1004/1004
(100 %)
12 diff
(98.9 %id)
CA432494 cell lines, Chondrosarcoma .a 3142 to 3892 769 to 19   AAA   751/751
(100 %)
1 diff
(99.9 %id)
AA283660 germinal center B cell .a 3254 to 3624 1 to 372       372/372
(100 %)
1 diff
(99.8 %id)
BG179663 adenocarcinoma, cell line, Prostate .a 3286 to 3892 1 to 609   AAA   609/609
(100 %)
5 diff
(99.2 %id)
AA219354 brain, neuroepithelial cells .a 3294 to 3890 593 to 1       593/604
(98 %)
8 diff
(98.7 %id)
DB370221   .a 3331 to 3892 565 to 1       565/566
(99 %)
5 diff
(99.2 %id)
DB370595   .a 3334 to 3886 552 to 1       552/552
(100 %)
6 diff
(99.0 %id)
DB362792   .a 3341 to 3892 544 to 1       544/545
(99 %)
14 diff
(97.5 %id)
DB325287 tongue .a 3347 to 3892 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
AI269889 Kidney .a 3366 to 3894 537 to 8       530/537
(98 %)
0 diff
(100 %id)
BM784033 Ascites, stomach .a 3369 to 3889 1 to 521       521/521
(100 %)
0 diff
(100 %id)
DB369409   .a 3370 to 3892 522 to 1       522/524
(99 %)
6 diff
(98.9 %id)
BQ026170 placenta .a 3413 to 3886 492 to 18   AAA   475/475
(100 %)
3 diff
(99.4 %id)
AI277947 placenta .a 3425 to 3887 465 to 3       463/465
(99 %)
0 diff
(100 %id)
AW089848 ovary, tumor, 5 pooled (see description) .a 3425 to 3892 469 to 1       469/469
(100 %)
2 diff
(99.6 %id)
AI128266 placenta .a 3426 to 3887 464 to 2       463/464
(99 %)
0 diff
(100 %id)
AW015771   .a 3428 to 3892 482 to 18   AAA   465/465
(100 %)
1 diff
(99.8 %id)
BP384524 pancreatic islet .a 3432 to 3929 499 to 1       499/499
(100 %)
1 diff
(99.8 %id)
AV719320 corresponding non cancerous liver tissue .a 3438 to 4034 1 to 597       597/597
(100 %)
4 diff
(99.4 %id)
DB532802 hippocampus .a 3438 to 3744 308 to 1       308/308
(100 %)
3 diff
(99.1 %id)
DB544808 hippocampus .a 3438 to 3890 455 to 1       455/455
(100 %)
8 diff
(98.3 %id)
DB551168.
matches multiple genes
hippocampus .a 3438 to 4152 716 to 2     also hits gene CP 715/716
(99 %)
0 diff
(100 %id)
AV720490 corresponding non cancerous liver tissue .a 3439 to 4031 1 to 589       589/590
(99 %)
20 diff
(96.7 %id)
H04844.
matches multiple genes
placenta .a 3444 to 3883 1 to 440     Submitted on the opposite strand, also hits gene CPP 440/445
(98 %)
3 diff
(99.4 %id)
AW474149 lymph node, lymphoma, follicular mixed small and largecell .a 3447 to 3894 448 to 1       448/448
(100 %)
1 diff
(99.8 %id)
EB361812 eye, lens .a 3448 to 3871 1 to 422       422/422
(100 %)
7 diff
(98.4 %id)
AV718561 corresponding non cancerous liver tissue .a 3449 to 4025 1 to 577       577/577
(100 %)
14 diff
(97.6 %id)
AV718656.
matches multiple genes
corresponding non cancerous liver tissue .a 3450 to 3993 1 to 545     also hits gene portaby 545/551
(98 %)
24 diff
(95.7 %id)
CB241738 Human Lung Epithelial cells, lung .a 3470 to 4128 674 to 16   tiling clone, AAA   659/659
(100 %)
1 diff
(99.9 %id)
BQ950220 sciatic nerve .a 3472 to 3886 1 to 415   AAA   415/415
(100 %)
0 diff
(100 %id)
AI277803 placenta .a 3491 to 3887 401 to 4       398/401
(99 %)
0 diff
(100 %id)
AI301236 placenta .a 3491 to 3877 401 to 13       389/401
(97 %)
6 diff
(98.6 %id)
AA661833 normal prostate, Prostate .a 3493 to 3890 427 to 28   AAA   400/400
(100 %)
25 diff
(93.8 %id)
N69299 liver and spleen .a 3518 to 3890 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
AI886539 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 3519 to 3893 370 to 1       370/372
(99 %)
12 diff
(96.8 %id)
AV655147 corresponding non cancerous liver tissue .a 3539 to 3948 410 to 1       410/410
(100 %)
1 diff
(99.8 %id)
AA953507 pooled .a 3578 to 3892 315 to 1       315/315
(100 %)
0 diff
(100 %id)
AI194079 lung .a 3584 to 3891 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AA832118 germinal center B cell .a 3590 to 3892 340 to 38   AAA   303/303
(100 %)
1 diff
(99.7 %id)
R26189 placenta .a 3591 to 3892 312 to 1       312/331
(94 %)
15 diff
(95.5 %id)
R46148 whole brain .a 3614 to 3886 290 to 11   AAA   280/320
(87 %)
6 diff
(98.2 %id)
AA283661 germinal center B cell .a 3640 to 3886 248 to 1       248/248
(100 %)
3 diff
(98.8 %id)
BM842031 lymph node, stomach .a 3650 to 3892 1 to 243   AAA   243/243
(100 %)
1 diff
(99.6 %id)
FN151566 breast carcinoma .a 3657 to 3773 1 to 118       118/118
(100 %)
4 diff
(96.7 %id)
CB241472 Human Lung Epithelial cells, lung .a 3659 to 3886 244 to 19   AAA   226/251
(90 %)
4 diff
(98.5 %id)
AI926046 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3663 to 3892 230 to 1       230/270
(85 %)
0 diff
(100 %id)
AW576487 lymph .a 3700 to 3892 210 to 18   AAA   193/193
(100 %)
4 diff
(98.0 %id)
BU675601 lung, Primary Lung Epithelial Cells .a 3710 to 3892 198 to 17   AAA   182/221
(82 %)
4 diff
(98.2 %id)
AW244013 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .a 3749 to 3894 149 to 4       146/149
(97 %)
0 diff
(100 %id)
AV658379 corresponding non cancerous liver tissue .a 3798 to 4415 619 to 1   tiling clone,   619/621
(99 %)
17 diff
(97.3 %id)
BP288254 lung .b 1 to 581 1 to 581   tiling clone,   581/581
(100 %)
2 diff
(99.7 %id)
DC347949 tongue, tumor tissue .b 7 to 535 1 to 529       529/529
(100 %)
1 diff
(99.9 %id)
AK298478   .b 15 to 2745 1 to 2731 G62S R300K tiling clone,   2731/2731
(100 %)
4 diff
(99.9 %id)
DC344184 thalamus .b 15 to 570 1 to 556       556/556
(100 %)
0 diff
(100 %id)
DC428391   .b 15 to 595 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
CR747809 melanotic melanoma, skin .b 26 to 543 1 to 518       518/518
(100 %)
6 diff
(98.9 %id)
BE884584 leiomyosarcoma, uterus .b 35 to 748 1 to 724       724/910
(79 %)
22 diff
(97.6 %id)
BQ436987 melanotic melanoma, skin .b 38 to 556 1 to 529       529/1271
(41 %)
21 diff
(98.4 %id)
BI090287 cervix .b 50 to 837 1 to 808       808/955
(84 %)
37 diff
(96.2 %id)
BU949414 Pancreas, Purified pancreatic islet .b 53 to 552 1 to 500       500/500
(100 %)
2 diff
(99.6 %id)
CK902768 Pancreas, Purified pancreatic islet .b 90 to 644 1 to 556   tiling clone, Submitted on the opposite strand 556/556
(100 %)
8 diff
(98.6 %id)
CR600710 HeLa cells Cot 25-normalized .c 1 to 1894 1 to 1894 exact tiling clone,   1894/1894
(100 %)
0 diff
(100 %id)
AK055245 brain .d 1 to 2486 1 to 2486 exact tiling clone, available from FLJ,   2486/2486
(100 %)
0 diff
(100 %id)
DA483798 brain .d 2 to 412 2 to 412   capped   411/411
(100 %)
0 diff
(100 %id)
W03540 melanocyte .d 1311 to 1631 18 to 338       321/338
(94 %)
6 diff
(98.3 %id)
BM453852 melanotic melanoma, skin .d 1376 to 2230 13 to 873       861/884
(97 %)
16 diff
(98.2 %id)
BX348597   .d 1378 to 2285 1 to 896       896/956
(93 %)
20 diff
(98.0 %id)
BX362602   .d 1501 to 2460 961 to 1       959/961
(99 %)
54 diff
(94.4 %id)
BU949175 Pancreas, Purified pancreatic islet .d 2000 to 2487 491 to 4       488/491
(99 %)
0 diff
(100 %id)
DB315062 brain .d 2008 to 2486 484 to 1       484/501
(96 %)
5 diff
(99.1 %id)
AA443332   .d 2024 to 2483 476 to 17   AAA   460/460
(100 %)
1 diff
(99.8 %id)
CR745220 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 2030 to 2486 472 to 15   AAA   458/458
(100 %)
1 diff
(99.8 %id)
AI827087 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 2050 to 2485 436 to 1       436/436
(100 %)
0 diff
(100 %id)
N67690 melanocyte .d 2085 to 2486 406 to 1       406/407
(99 %)
4 diff
(99.1 %id)
N67687.
matches multiple genes
melanocyte .d 2088 to 2486 399 to 1     also hits gene NEDD4L 399/399
(100 %)
1 diff
(99.8 %id)
N67692 melanocyte .d 2088 to 2486 401 to 1       401/401
(100 %)
3 diff
(99.3 %id)
BF832163 head_neck .d 2169 to 2358 1 to 189       189/189
(100 %)
5 diff
(97.4 %id)
AI800359 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 2178 to 2486 309 to 1       309/309
(100 %)
2 diff
(99.4 %id)
BF838838 head_neck .d 2198 to 2355 167 to 1     Submitted on the opposite strand 167/179
(93 %)
15 diff
(91.7 %id)
AW151423 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 2261 to 2489 231 to 1   tiling clone,   231/231
(100 %)
2 diff
(99.2 %id)
BP383062 ilea mucosa .e 1 to 555 2 to 557   tiling clone,   557/1018
(54 %)
5 diff
(99.6 %id)
AK026357 human small intestine .e 445 to 2403 1 to 1963   tiling clone, available from FLJ, AAA   1963/1963
(100 %)
3 diff
(99.9 %id)
BU948831 Pancreas, Purified pancreatic islet .f 1 to 373 1 to 372   tiling clone,   372/372
(100 %)
13 diff
(96.6 %id)
BU785126 Pancreas, Purified pancreatic islet .f 6 to 585 1 to 580   tiling clone,   580/580
(100 %)
3 diff
(99.5 %id)
BU784872 Pancreas, Purified pancreatic islet .f 914 to 1462 552 to 4   tiling clone,   549/552
(99 %)
0 diff
(100 %id)
BU948586 Pancreas, Purified pancreatic islet .f 1015 to 1462 452 to 4   tiling clone,   449/452
(99 %)
0 diff
(100 %id)
DN915657   .g 1 to 642 1 to 642 R75K K115R tiling clone,   642/642
(100 %)
3 diff
(99.6 %id)
BE936564 nervous_tumor .g 583 to 844 4 to 266   tiling clone,   263/266
(98 %)
10 diff
(96.3 %id)
AW890922 nervous_tumor .g 588 to 850 25 to 286   tiling clone,   262/293
(89 %)
8 diff
(97.3 %id)
DA511383 brain .h 1 to 550 7 to 556 exact tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
BP385658 pancreatic islet .h 425 to 622 1 to 198   tiling clone, Submitted on the opposite strand 198/212
(93 %)
0 diff
(100 %id)
DA450680 tongue, tumor tissue .i 1 to 450 10 to 460 R99X tiling clone, capped   459/459
(100 %)
1 diff
(99.8 %id)
DA438775 tongue, tumor tissue .j 1 to 600 2 to 601   tiling clone, capped   600/600
(100 %)
1 diff
(99.9 %id)
AW474827 serous papillary carcinoma, high grade, 2pooled tumors, uterus .j 130 to 507 1 to 378     Submitted on the opposite strand 378/378
(100 %)
2 diff
(99.5 %id)
DA220522 brain .j 484 to 1041 2 to 561   tiling clone, to resequence, capped   560/560
(100 %)
2 diff
(99.7 %id)
DB304957 brain .j 1737 to 2274 544 to 3 L21F F22C L23S L25S L26C ... tiling clone, to resequence,   542/544
(99 %)
0 diff
(100 %id)
CD000110 Pooled-Skin .k-u 1 to 759 1 to 763 exact tiling clone,   763/763
(100 %)
13 diff
(98.3 %id)
BG716431 brain, hypothalamus .k-u 86 to 808 1 to 750 C8*     750/750
(100 %)
60 diff
(92.0 %id)
DB499548.
matches multiple genes
hypothalamus .k-u 91 to 573 1 to 491     also hits gene CP 491/491
(100 %)
5 diff
(99.0 %id)
AA281666 germinal center B cell .k-u 322 to 803 1 to 482 exact     482/483
(99 %)
1 diff
(99.8 %id)
FN060449 breast carcinoma .k-u 382 to 433 1 to 52       52/52
(100 %)
0 diff
(100 %id)
BE081066 breast .k-u 417 to 763 6 to 352 N28Y     347/352
(98 %)
15 diff
(95.8 %id)
H42697 breast .k-u 427 to 711 1 to 290 exact     290/291
(99 %)
10 diff
(96.6 %id)
CA312192 Human Lung Epithelial cells, lung .k-u 614 to 876 278 to 16   tiling clone, AAA   263/286
(91 %)
0 diff
(100 %id)
BG995696 head_neck .l-u 1 to 284 289 to 5 S5R P17A W18L N19A F20L ... tiling clone,   285/289
(98 %)
0 diff
(100 %id)
AI498559 lymph node, lymphoma, follicular mixed small and largecell .m-u 1 to 148 148 to 1 exact tiling clone,   148/148
(100 %)
0 diff
(100 %id)
AV734860 pheochromocytoma Gene HPS3, variant not shown         Suspected internal deletion, this clone was ignored    
DB313631 tongue, tumor tissue Gene HPS3, variant not shown         Suspected internal deletion, this clone was ignored    
DA439981 tongue, tumor tissue Gene HPS3, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA459485 tongue, tumor tissue Gene HPS3, variant not shown       capped Suspected internal deletion, this clone was ignored    
FN082849 breast carcinoma Gene HPS3, variant not shown         This clone was ignored    
AV655558 corresponding non cancerous liver tissue Gene HPS3, variant not shown         This clone was ignored    
AV720745 corresponding non cancerous liver tissue Gene HPS3, variant not shown         This clone was ignored    
N72151 melanocyte Gene HPS3, variant not shown         Suspected internal deletion, this clone was ignored    
W00421 melanocyte Gene HPS3, variant not shown         Suspected internal deletion, this clone was ignored    
BQ723551 sympathetic trunk Gene HPS3, variant not shown              
BP294476 Liver Gene HPS3, variant not shown         This clone was ignored    
BP294477 Liver Gene HPS3, variant not shown         This clone was ignored    
DB175949 kidney, tumor tissue Gene HPS3, variant not shown       capped This clone was ignored    
DB347436 kidney, tumor tissue Gene HPS3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC