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Gene HPDTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
147 supporting clones for gene HPD back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD675915 eye, lens .a 1 to 538 1 to 537   tiling clone,   537/537
(100 %)
6 diff
(98.9 %id)
BG701507 brain, hippocampus .a 130 to 999 1 to 873       873/927
(94 %)
16 diff
(98.3 %id)
BG703051 brain, hippocampus .a 130 to 939 1 to 807       807/807
(100 %)
10 diff
(98.8 %id)
NM_002150.2   .a 131 to 1551 1 to 1421 T33A RefSeq, AAA   1421/1421
(100 %)
1 diff
(100.0 %id)
CB123016 Liver .a 132 to 730 1 to 599       599/599
(100 %)
4 diff
(99.4 %id)
BG433069 Kidney .a 134 to 926 1 to 801       799/890
(89 %)
46 diff
(94.9 %id)
TI_57147218   .a 134 to 888 20 to 776       757/776
(97 %)
11 diff
(98.6 %id)
CB158457 Liver .a 134 to 726 1 to 593       593/593
(100 %)
3 diff
(99.5 %id)
AK290826 Liver .a 135 to 1551 1 to 1417 T33A     1417/1417
(100 %)
2 diff
(99.9 %id)
BP214890 corpus callosum .a 135 to 716 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BX643300   .a 135 to 732 1 to 598       598/598
(100 %)
1 diff
(99.9 %id)
CB120324 Liver .a 135 to 649 1 to 515       515/515
(100 %)
1 diff
(99.9 %id)
CB122243 Liver .a 135 to 689 1 to 555       555/562
(98 %)
3 diff
(99.5 %id)
CB122275 Liver .a 135 to 730 1 to 596       596/596
(100 %)
2 diff
(99.7 %id)
CB141773 Liver .a 135 to 741 1 to 607       607/607
(100 %)
1 diff
(99.9 %id)
CB138265 Liver .a 135 to 722 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
CB133201 Liver .a 135 to 719 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
CB148342 Liver .a 135 to 703 1 to 569       569/569
(100 %)
12 diff
(97.9 %id)
CB148360 Liver .a 135 to 731 1 to 596       596/596
(100 %)
6 diff
(99.0 %id)
CB148376 Liver .a 135 to 730 1 to 596       596/596
(100 %)
1 diff
(99.9 %id)
CB146933 Liver .a 135 to 579 1 to 446       446/446
(100 %)
4 diff
(99.2 %id)
CB148805 Liver .a 135 to 678 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
CB115649 Liver .a 136 to 651 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
DA638547 Liver .a 136 to 652 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA640853 Liver .a 136 to 717 2 to 581   capped   582/580
(100 %)
2 diff
(99.7 %id)
BG432662 Kidney .a 137 to 750 1 to 610       610/610
(100 %)
21 diff
(96.6 %id)
CB148250 Liver .a 137 to 731 1 to 595       595/595
(100 %)
5 diff
(99.2 %id)
DB465485 hippocampus .a 138 to 557 1 to 419       419/419
(100 %)
11 diff
(97.4 %id)
DB466303 hippocampus .a 138 to 552 1 to 416       416/416
(100 %)
3 diff
(99.3 %id)
DB474812 hippocampus .a 138 to 420 1 to 285       285/347
(82 %)
14 diff
(96.0 %id)
BG426847 Kidney .a 138 to 962 1 to 828       830/886
(93 %)
31 diff
(96.6 %id)
BP217240 corpus callosum .a 139 to 721 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BJ993923 hepatoblastoma .a 139 to 608 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
CB106926 Liver .a 139 to 646 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
CB114900 Liver .a 139 to 782 1 to 644       644/644
(100 %)
1 diff
(99.9 %id)
CB147214 Liver .a 139 to 678 1 to 540       540/540
(100 %)
4 diff
(99.3 %id)
BP294144 Liver .a 139 to 721 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA035249 breast .a 140 to 680 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
CB116639 Liver .a 140 to 436 1 to 297       297/297
(100 %)
4 diff
(98.7 %id)
CB142701 Liver .a 140 to 473 1 to 334       334/336
(99 %)
7 diff
(98.0 %id)
CB112019 Liver .a 142 to 740 1 to 599       599/599
(100 %)
3 diff
(99.5 %id)
BI760509 pooled colon, kidney, stomach .a 144 to 848 1 to 706       706/706
(100 %)
1 diff
(99.9 %id)
TI_57147974   .a 144 to 848 68 to 773       706/773
(91 %)
7 diff
(99.1 %id)
BF725511 eye, Iris .a 146 to 651 1 to 506       506/506
(100 %)
4 diff
(99.3 %id)
BC014790 Lung, large cell carcinoma .a 146 to 1551 1 to 1405 T33A H89T G90V D91T G92E ... available from MGC, AAA   1405/1405
(100 %)
2 diff
(99.9 %id)
DR003811 Liver .a 146 to 853 1 to 708       708/708
(100 %)
3 diff
(99.6 %id)
X72389   .a 146 to 1551 1 to 1403 T33A AAA   1403/1403
(100 %)
9 diff
(99.4 %id)
BG751067 eye, normal pigmented retinal epithelium .a 147 to 926 1 to 781       781/782
(99 %)
7 diff
(99.2 %id)
BG751187 eye, normal pigmented retinal epithelium .a 147 to 959 1 to 819       819/820
(99 %)
20 diff
(97.6 %id)
BI252261 hepatocellular carcinoma, cell line, Liver .a 147 to 825 1 to 687       687/866
(79 %)
35 diff
(96.0 %id)
BI252262 hepatocellular carcinoma, cell line, Liver .a 148 to 829 1 to 696   fully sequenced,   696/696
(100 %)
22 diff
(96.9 %id)
BC024287 Liver, hepatocellular carcinoma .a 149 to 1551 1 to 1403 T33A tiling clone, available from MGC, AAA   1403/1403
(100 %)
1 diff
(100.0 %id)
AV685033 hepatocellular carcinoma .a 149 to 495 1 to 347       347/361
(96 %)
3 diff
(99.2 %id)
BI764753 pooled colon, kidney, stomach .a 149 to 888 1 to 741       741/741
(100 %)
5 diff
(99.4 %id)
BQ651938 hepatocellular carcinoma, cell line, Liver .a 149 to 1004 13 to 871       859/902
(95 %)
23 diff
(97.5 %id)
BQ650314 hepatocellular carcinoma, cell line, Liver .a 150 to 930 1 to 785       785/845
(92 %)
12 diff
(98.6 %id)
BQ651955 hepatocellular carcinoma, cell line, Liver .a 150 to 930 1 to 781       781/949
(82 %)
4 diff
(99.6 %id)
BQ648011 hepatocellular carcinoma, cell line, Liver .a 150 to 858 1 to 714       714/961
(74 %)
15 diff
(98.5 %id)
BQ651369 hepatocellular carcinoma, cell line, Liver .a 150 to 902 1 to 764   AAA   764/989
(77 %)
29 diff
(97.1 %id)
BF724404 eye, Iris .a 152 to 629 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
BG331477 large cell carcinoma, lung .a 152 to 879 1 to 731       731/819
(89 %)
37 diff
(95.5 %id)
AV655626 corresponding non cancerous liver tissue .a 153 to 761 1 to 610     Submitted on the opposite strand 610/628
(97 %)
3 diff
(99.6 %id)
T74416 Liver .a 154 to 335 1 to 181       181/181
(100 %)
4 diff
(97.8 %id)
BE786849 large cell carcinoma, lung .a 154 to 924 1 to 776   available from MGC,   776/1067
(72 %)
53 diff
(95.1 %id)
DA630707 Kidney .a 154 to 729 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
CD614163   .a 155 to 839 59 to 739       683/742
(92 %)
17 diff
(97.8 %id)
CD614164   .a 155 to 905 751 to 1       749/759
(98 %)
9 diff
(98.9 %id)
BX281314 large cell carcinoma, lung .a 157 to 663 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
BF569652 Kidney, renal carcinoma (ascites) .a 158 to 893 1 to 726   fully sequenced,   728/728
(100 %)
22 diff
(97.0 %id)
BQ224841 large cell carcinoma, lung .a 160 to 1123 1 to 967       967/1027
(94 %)
19 diff
(98.2 %id)
CB162518 Liver .a 167 to 785 1 to 619       619/619
(100 %)
1 diff
(99.9 %id)
CB164060 Liver .a 167 to 722 1 to 556   tiling clone,   556/556
(100 %)
0 diff
(100 %id)
BM696749 eye, lens .a 168 to 733 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
BI253089 hepatocellular carcinoma, cell line, Liver .a 799 to 1470 678 to 7   fully sequenced,   672/678
(99 %)
3 diff
(99.6 %id)
BF569990 Kidney, renal carcinoma (ascites) .a 863 to 1495 636 to 1   fully sequenced,   636/636
(100 %)
9 diff
(98.6 %id)
T74042 Liver .a 1299 to 1467 167 to 1       167/167
(100 %)
3 diff
(98.3 %id)
BU735271 eye, lens .a 1315 to 1551 255 to 19   AAA   237/237
(100 %)
7 diff
(97.1 %id)
AK057510 testis .b 1 to 1895 2 to 1896 exact tiling clone, available from FLJ,   1896/1896
(100 %)
1 diff
(100.0 %id)
NM_001171993.1   .b 1 to 1896 2 to 1897 exact RefSeq, AAA   1897/1897
(100 %)
1 diff
(100.0 %id)
DB025947 testis .b 1 to 548 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB025979 testis .b 1 to 545 2 to 546   capped   545/556
(98 %)
1 diff
(99.9 %id)
T53931 Liver .b 517 to 832 1 to 322       322/323
(99 %)
19 diff
(94.2 %id)
CD614165   .b 518 to 1031 13 to 532       519/532
(97 %)
13 diff
(97.6 %id)
AL556243 placenta .b 518 to 1436 34 to 951       917/951
(96 %)
9 diff
(99.1 %id)
BQ917857 large cell carcinoma, lung .b 518 to 1120 9 to 612       604/861
(70 %)
21 diff
(97.6 %id)
TI_1948217984   .b 518 to 960 142 to 584   fully sequenced,   444/585
(75 %)
11 diff
(98.2 %id)
TI_1948218150   .b 518 to 960 140 to 582   fully sequenced,   444/583
(76 %)
7 diff
(98.8 %id)
TI_1948218322   .b 518 to 960 144 to 586   fully sequenced,   444/587
(75 %)
7 diff
(98.9 %id)
EL735348 mixed .b 519 to 1337 4 to 820       820/820
(100 %)
3 diff
(99.7 %id)
T72423 Liver .b 519 to 601 1 to 83       83/83
(100 %)
5 diff
(94.0 %id)
CB117080 Liver .b 519 to 996 5 to 482       482/482
(100 %)
3 diff
(99.4 %id)
CB142700 Liver .b 519 to 1067 4 to 552       552/552
(100 %)
2 diff
(99.7 %id)
CB144708 Liver .b 544 to 649 7 to 112       106/112
(94 %)
2 diff
(98.3 %id)
Z19961   .b 562 to 781 1 to 220       220/220
(100 %)
1 diff
(99.6 %id)
CB148312 Liver .b 569 to 992 1 to 422       422/422
(100 %)
17 diff
(96.0 %id)
BQ650847 hepatocellular carcinoma, cell line, Liver .b 587 to 1349 19 to 784       766/948
(80 %)
11 diff
(98.9 %id)
CB146651 Liver .b 609 to 1077 41 to 509       467/509
(91 %)
14 diff
(97.3 %id)
T64708 Liver .b 613 to 778 1 to 166       166/166
(100 %)
4 diff
(97.6 %id)
TI_151793893   .b 648 to 1417 113 to 881       769/771
(99 %)
8 diff
(99.0 %id)
BG400493 Kidney .b 665 to 1557 1 to 912       912/932
(97 %)
49 diff
(94.8 %id)
BI762309 pooled colon, kidney, stomach .b 678 to 1392 1 to 714       714/717
(99 %)
12 diff
(98.4 %id)
TI_57151533   .b 678 to 1392 28 to 741       714/744
(95 %)
18 diff
(97.6 %id)
CB148313 Liver .b 679 to 996 1 to 318       318/318
(100 %)
4 diff
(98.8 %id)
CB124755 Liver .b 712 to 1133 1 to 422       422/422
(100 %)
1 diff
(99.8 %id)
CB124804 Liver .b 712 to 1322 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
CB138927 Liver .b 712 to 1322 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
CB139872 Liver .b 712 to 1257 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
CB139923 Liver .b 712 to 1253 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
CB139981 Liver .b 712 to 1241 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
CB133616 Liver .b 712 to 877 1 to 166       166/166
(100 %)
1 diff
(99.4 %id)
CB133288 Liver .b 712 to 987 1 to 276       276/276
(100 %)
1 diff
(99.7 %id)
CD614166   .b 817 to 1426 612 to 1       612/612
(100 %)
2 diff
(99.7 %id)
TI_1948217985   .b 899 to 1696 920 to 123   fully sequenced,   798/920
(86 %)
0 diff
(100 %id)
TI_1948218151   .b 899 to 1696 920 to 125   fully sequenced,   796/920
(86 %)
4 diff
(99.6 %id)
TI_1948218323   .b 899 to 1696 918 to 121   fully sequenced,   798/918
(86 %)
5 diff
(99.5 %id)
TI_1948218493   .b 914 to 1696 908 to 125       784/1227
(63 %)
7 diff
(99.5 %id)
AL578550 placenta .b 929 to 1775 946 to 101       846/1001
(84 %)
8 diff
(99.3 %id)
TI_57147211   .b 982 to 1644 27 to 689       663/689
(96 %)
6 diff
(99.2 %id)
BI761327 pooled colon, kidney, stomach .b 989 to 1644 1 to 656       656/656
(100 %)
0 diff
(100 %id)
BI765517 pooled colon, kidney, stomach .b 1034 to 1840 24 to 828       804/830
(96 %)
17 diff
(98.0 %id)
TI_57152440   .b 1034 to 1840 54 to 858       804/860
(93 %)
17 diff
(98.1 %id)
CB156837 Liver .b 1042 to 1663 1 to 623       623/623
(100 %)
1 diff
(99.9 %id)
BM931646 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1062 to 1500 1 to 439   fully sequenced,   439/439
(100 %)
1 diff
(99.8 %id)
R91878 liver and spleen .b 1081 to 1372 1 to 292       292/292
(100 %)
0 diff
(100 %id)
BQ927091 large cell carcinoma, lung .b 1084 to 1891 1 to 824       824/979
(84 %)
29 diff
(97.1 %id)
CB157182 Liver .b 1099 to 1665 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
BF724696 eye, Iris .b 1203 to 1537 1 to 335       335/335
(100 %)
0 diff
(100 %id)
BU738209 eye, lens .b 1264 to 1896 651 to 19   AAA   633/633
(100 %)
0 diff
(100 %id)
CB164478 Liver .b 1282 to 1670 1 to 391       391/391
(100 %)
3 diff
(99.3 %id)
BX327502   .b 1346 to 1898 1 to 553   tiling clone,   553/553
(100 %)
0 diff
(100 %id)
BX327503   .b 1346 to 1897 1 to 553       553/609
(90 %)
2 diff
(99.7 %id)
DB336543 testis .b 1365 to 1895 532 to 1       532/536
(99 %)
1 diff
(99.9 %id)
AV718521 corresponding non cancerous liver tissue .b 1380 to 1885 506 to 1     Submitted on the opposite strand 506/507
(99 %)
1 diff
(99.9 %id)
AA677162 liver and spleen .b 1390 to 1881 494 to 1       494/494
(100 %)
35 diff
(93.0 %id)
R11482 liver and spleen .b 1425 to 1640 1 to 216       216/216
(100 %)
1 diff
(99.6 %id)
AA010605 liver and spleen .b 1434 to 1896 465 to 1       465/465
(100 %)
10 diff
(97.9 %id)
DB543645 hippocampus .b 1435 to 1896 1 to 462     Submitted on the opposite strand 462/462
(100 %)
0 diff
(100 %id)
BM675679 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1439 to 1896 476 to 19   fully sequenced, AAA   458/458
(100 %)
0 diff
(100 %id)
DB532189 hippocampus .b 1506 to 1896 1 to 391     Submitted on the opposite strand 391/391
(100 %)
0 diff
(100 %id)
CB163973 Liver .b 1538 to 1896 412 to 54   AAA Submitted on the opposite strand 359/359
(100 %)
24 diff
(93.4 %id)
AA917999 Kidney .b 1544 to 1894 346 to 1       346/346
(100 %)
16 diff
(95.4 %id)
R19384 liver and spleen .b 1578 to 1881 300 to 1       300/331
(90 %)
13 diff
(96.1 %id)
R92714 liver and spleen .b 1581 to 1882 301 to 1       301/326
(92 %)
6 diff
(98.2 %id)
T64578 Liver .b 1584 to 1750 167 to 2       166/197
(84 %)
0 diff
(100 %id)
T72399 Liver .b 1584 to 1801 226 to 11       216/227
(95 %)
0 diff
(100 %id)
H90493 liver and spleen .b 1584 to 1882 294 to 1       294/295
(99 %)
5 diff
(98.4 %id)
BI517929 pooled colon, kidney, stomach .b 1591 to 1851 258 to 1       258/262
(98 %)
17 diff
(93.6 %id)
TI_45235506   .b 1591 to 1851 258 to 1       258/262
(98 %)
17 diff
(93.6 %id)
T53807 Liver .b 1604 to 1699 96 to 1       96/96
(100 %)
3 diff
(96.9 %id)
AW015579   .b 1645 to 1896 269 to 18   AAA   252/253
(99 %)
10 diff
(96.1 %id)
AI589191 Kidney .b 1664 to 1898 242 to 8       235/242
(97 %)
0 diff
(100 %id)
R94910 liver and spleen .b 1723 to 1811 88 to 1       88/93
(94 %)
1 diff
(99.0 %id)
DB184968 liver, tumor tissue .c 1 to 581 2 to 582 exact tiling clone, capped   581/581
(100 %)
1 diff
(99.9 %id)
DB184845 liver, tumor tissue .c 7 to 550 2 to 545 exact capped   544/544
(100 %)
1 diff
(99.9 %id)
BQ430906 large cell carcinoma, lung .d 1 to 778 1 to 783 G75R tiling clone,   783/950
(82 %)
18 diff
(98.2 %id)
AV694081 hepatocellular carcinoma Gene HPD, variant not shown         This clone was ignored    
AV646674 corresponding non cancerous liver tissue Gene HPD, variant not shown         Submitted on the opposite strand    
AV647126 corresponding non cancerous liver tissue Gene HPD, variant not shown         Submitted on the opposite strand    
AV647170 corresponding non cancerous liver tissue Gene HPD, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BP348274 brain Gene HPD, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC