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Gene HOXD9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
81 supporting clones for gene HOXD9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG899353 cartilage .a 1 to 325 77 to 402   tiling clone,   326/334
(97 %)
6 diff
(98.3 %id)
TI_57152612   .a 262 to 849 29 to 618       590/629
(93 %)
10 diff
(98.5 %id)
BC044855 Colon, Kidney, Stomach, adult, whole pooled .a 267 to 2057 1 to 1791 G144V S146A P147L G148A S150A ... tiling clone, available from MGC,   1791/1791
(100 %)
2 diff
(99.9 %id)
BI764506 pooled colon, kidney, stomach .a 267 to 849 1 to 585       585/596
(98 %)
7 diff
(98.9 %id)
NM_014213.3   .a 267 to 2150 1 to 1884 exact RefSeq, AAA   1884/1884
(100 %)
0 diff
(100 %id)
BX394318 Neuroblastoma Cot 25-normalized .a 293 to 1231 1 to 937       937/937
(100 %)
70 diff
(92.6 %id)
BX374409 Neuroblastoma Cot 10-normalized .a 302 to 1171 1 to 867       867/896
(96 %)
11 diff
(98.8 %id)
TI_57145941   .a 303 to 840 73 to 615       543/758
(71 %)
6 diff
(99.3 %id)
TI_57146171   .a 304 to 877 81 to 679       599/679
(88 %)
6 diff
(99.2 %id)
BX334043 Neuroblastoma Cot 50-normalized .a 308 to 1377 1 to 1063   tiling clone,   1063/1107
(96 %)
23 diff
(98.0 %id)
BX344940 Neuroblastoma Cot 50-normalized .a 308 to 1263 1 to 957       957/967
(98 %)
10 diff
(99.0 %id)
BI759029 pooled colon, kidney, stomach .a 310 to 877 1 to 593       593/593
(100 %)
47 diff
(92.1 %id)
BI759118 pooled colon, kidney, stomach .a 312 to 840 1 to 534       534/677
(78 %)
18 diff
(97.4 %id)
BI761662 pooled colon, kidney, stomach .a 342 to 935 1 to 606       606/606
(100 %)
62 diff
(89.8 %id)
X59372 Spinal cord .a 345 to 1478 1 to 1133 A219G A220G T221D T224N A276E     1133/1133
(100 %)
5 diff
(99.6 %id)
TI_57147814   .a 359 to 843 27 to 512       486/663
(73 %)
17 diff
(97.5 %id)
TI_57149084   .a 864 to 935 565 to 638       552/638
(86 %)
17 diff
(97.4 %id)
BM807984 ovary (pool of 3) .a 932 to 1546 1 to 614       614/1149
(53 %)
12 diff
(99.0 %id)
BI761261 pooled colon, kidney, stomach .a 949 to 1040 1 to 92       92/92
(100 %)
0 diff
(100 %id)
TI_57147139   .a 949 to 1747 36 to 829       794/830
(95 %)
24 diff
(97.2 %id)
BX104609 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1183 to 1884 1 to 702       702/702
(100 %)
2 diff
(99.8 %id)
AA478764 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1183 to 1647 1 to 464   fully sequenced,   464/464
(100 %)
3 diff
(99.4 %id)
AA426396 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1183 to 1593 1 to 411   fully sequenced,   411/411
(100 %)
5 diff
(98.8 %id)
BX390789   .a 1247 to 1941 1 to 707       707/847
(83 %)
27 diff
(96.9 %id)
TI_157612987   .a 1269 to 2078 858 to 37       822/860
(95 %)
0 diff
(100 %id)
AI432470 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1318 to 2065 739 to 1       739/739
(100 %)
25 diff
(96.7 %id)
AI694186 adenocarcinoma, Pancreas .a 1318 to 2057 738 to 1       738/738
(100 %)
18 diff
(97.6 %id)
AU253257 neuroblastoma .a 1368 to 2062 9 to 699       691/699
(98 %)
6 diff
(99.2 %id)
AA424747 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1370 to 1751 1 to 381   fully sequenced,   381/381
(100 %)
6 diff
(98.5 %id)
BE467636 carcinoid, lung .a 1373 to 2065 692 to 1       692/692
(100 %)
5 diff
(99.3 %id)
AI264311 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1387 to 2030 647 to 1       647/647
(100 %)
3 diff
(99.6 %id)
AA774603 heart .a 1394 to 2065 671 to 1       671/671
(100 %)
45 diff
(93.3 %id)
AW152267 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1418 to 2065 649 to 2       648/649
(99 %)
0 diff
(100 %id)
BE551168 carcinoid, lung .a 1523 to 2019 502 to 1       502/504
(99 %)
5 diff
(99.1 %id)
AW016021   .a 1530 to 2064 534 to 1       534/538
(99 %)
1 diff
(99.9 %id)
AI991194 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1542 to 2065 522 to 1       522/522
(100 %)
9 diff
(98.3 %id)
BE669582 carcinoid, lung .a 1542 to 2065 525 to 2       524/525
(99 %)
0 diff
(100 %id)
AI925238 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1545 to 2030 486 to 1       486/486
(100 %)
1 diff
(99.8 %id)
BE218802 carcinoid, lung .a 1546 to 2047 502 to 1       502/502
(100 %)
11 diff
(97.9 %id)
BE219356 carcinoid, lung .a 1546 to 2065 520 to 1       520/520
(100 %)
0 diff
(100 %id)
AI367299 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1571 to 2065 495 to 1       495/495
(100 %)
1 diff
(99.8 %id)
AI275516 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1573 to 2065 493 to 1       493/493
(100 %)
0 diff
(100 %id)
AI074693 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1578 to 2061 484 to 4       481/484
(99 %)
0 diff
(100 %id)
AA418987 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1580 to 2065 485 to 1   fully sequenced,   485/485
(100 %)
1 diff
(99.8 %id)
AI420400 Prostate .a 1585 to 2065 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AI127062 heart .a 1586 to 2047 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AI091690 pooled .a 1588 to 2047 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
AI675650 Prostate .a 1588 to 2047 459 to 1       459/465
(98 %)
4 diff
(99.2 %id)
BU732638 eye, optic nerve .a 1601 to 2150 568 to 19   AAA   550/558
(98 %)
0 diff
(100 %id)
TI_151770559   .a 1601 to 2150 103 to 652   AAA   550/550
(100 %)
2 diff
(99.7 %id)
AA479985 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1617 to 2065 448 to 1   fully sequenced,   448/448
(100 %)
1 diff
(99.8 %id)
AW419056 2 pooled tumors (clear cell type), Kidney .a 1620 to 2028 409 to 1       409/409
(100 %)
0 diff
(100 %id)
AI692794 adenocarcinoma, Pancreas .a 1653 to 1983 415 to 80       336/415
(80 %)
0 diff
(100 %id)
AI306148 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1660 to 2065 406 to 1       406/406
(100 %)
0 diff
(100 %id)
AI290553 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1686 to 2065 379 to 1       379/379
(100 %)
1 diff
(99.8 %id)
AW235860 Kidney .a 1697 to 2065 371 to 1       371/371
(100 %)
4 diff
(99.0 %id)
AA424871 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1721 to 2065 344 to 1   fully sequenced,   344/344
(100 %)
5 diff
(98.6 %id)
AA938529 2 pooled tumors (clear cell type), Kidney .a 1722 to 2019 298 to 1       298/298
(100 %)
0 diff
(100 %id)
AI239897 pooled .a 1731 to 2038 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AW339863 pooled .a 1731 to 2044 315 to 1       315/315
(100 %)
5 diff
(98.5 %id)
AI611280 Prostate .a 1741 to 2030 291 to 1       291/291
(100 %)
1 diff
(99.7 %id)
AI401822 Prostate .a 1742 to 2047 306 to 1       306/306
(100 %)
0 diff
(100 %id)
AI610160 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1749 to 2171 424 to 2   tiling clone,   423/424
(99 %)
0 diff
(100 %id)
AI215432 pooled .a 1767 to 2030 266 to 1       266/266
(100 %)
2 diff
(99.3 %id)
AI201249   .a 1775 to 2056 282 to 1       282/282
(100 %)
0 diff
(100 %id)
AI972635 Prostate .a 1783 to 2065 283 to 1       283/283
(100 %)
0 diff
(100 %id)
AI972688 Prostate .a 1783 to 2047 265 to 1       265/265
(100 %)
0 diff
(100 %id)
BF434908 Kidney .a 1785 to 2065 281 to 1       281/281
(100 %)
2 diff
(99.3 %id)
F31210 pectoral muscle (after mastectomy) .a 1846 to 2056 10 to 219       210/219
(95 %)
6 diff
(97.3 %id)
AI818195 normal prostate, Prostate .a 1853 to 2020 168 to 1       168/168
(100 %)
0 diff
(100 %id)
AI675262 Prostate .a 1865 to 2024 167 to 8       160/167
(95 %)
0 diff
(100 %id)
AI394644 B-cell, chronic lymphotic leukemia .a 1882 to 2065 184 to 1       184/184
(100 %)
0 diff
(100 %id)
AA733216 heart .a 1887 to 2065 176 to 1       176/176
(100 %)
7 diff
(96.1 %id)
AA626196 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1889 to 2065 176 to 1       176/176
(100 %)
1 diff
(99.5 %id)
AA886779 Kidney .a 1890 to 2019 130 to 1       130/130
(100 %)
0 diff
(100 %id)
BG171365 hypernephroma, cell line, Kidney .a 1985 to 2055 1 to 71       71/71
(100 %)
0 diff
(100 %id)
AA478827.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1 to 299 1 to 296   tiling clone, also hits gene MKI67 296/296
(100 %)
9 diff
(97.0 %id)
AI522033 Kidney .b 373 to 786 414 to 1   tiling clone,   414/414
(100 %)
1 diff
(99.8 %id)
AW800685 uterus .b 411 to 536 140 to 17       124/153
(81 %)
0 diff
(100 %id)
BF221601 pooled germ cell tumors .b 779 to 1047 1 to 269     Submitted on the opposite strand 269/269
(100 %)
6 diff
(97.8 %id)
BF510124   .b 780 to 1080 1 to 301   tiling clone, Submitted on the opposite strand 301/311
(96 %)
1 diff
(99.7 %id)
BX363196   Gene HOXD9, variant not shown         Suspected internal deletion, this clone was ignored    
AI468800 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene HOXD9, variant not shown         Suspected internal deletion, this clone was ignored    
AW614612 Kidney Gene HOXD9, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI