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Gene HOXD8TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
44 supporting clones for gene HOXD8 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR613626 Neuroblastoma Cot 50-normalized .a 1 to 1891 1 to 1891 exact tiling clone,   1891/1891
(100 %)
0 diff
(100 %id)
AL530925 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 1 to 947 1 to 941       941/948
(99 %)
18 diff
(98.2 %id)
NM_019558.2   .a 10 to 1888 1 to 1879 exact RefSeq,   1879/1879
(100 %)
0 diff
(100 %id)
BG432602 Kidney .a 150 to 776 1 to 618       618/661
(93 %)
12 diff
(98.2 %id)
DR007192 Spleen .a 186 to 879 1 to 695       695/695
(100 %)
8 diff
(98.9 %id)
BP274884 Kidney .a 459 to 994 1 to 536       536/554
(96 %)
30 diff
(94.6 %id)
BI761441 pooled colon, kidney, stomach .a 469 to 901 1 to 435       435/816
(53 %)
8 diff
(99.1 %id)
TI_57147351   .a 469 to 901 35 to 469       435/850
(51 %)
8 diff
(99.1 %id)
AL528509 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 557 to 1043 67 to 573       507/674
(75 %)
33 diff
(95.2 %id)
BF692716 melanotic melanoma, high MDR, skin .a 588 to 1181 1 to 573       573/899
(63 %)
78 diff
(91.4 %id)
BX391621 Neuroblastoma Cot 50-normalized .a 611 to 1146 535 to 1       535/549
(97 %)
19 diff
(96.6 %id)
CN369188 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 671 to 872 9 to 211       203/211
(96 %)
4 diff
(98.2 %id)
AL530924 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 962 to 1891 929 to 1       929/1033
(89 %)
15 diff
(98.6 %id)
BC038709 Kidney .b 1 to 1754 1 to 1754 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1754/1756
(99 %)
1 diff
(100.0 %id)
BX369808 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 658 to 1221 1 to 563   fully sequenced,   563/563
(100 %)
4 diff
(99.3 %id)
T29810 testis .b 907 to 1165 1 to 259       259/259
(100 %)
1 diff
(99.7 %id)
AW949854   .b 923 to 1467 1 to 551       551/582
(94 %)
21 diff
(96.4 %id)
TI_57148932   .b 1024 to 1735 30 to 742       713/742
(96 %)
8 diff
(99.0 %id)
BI764317 pooled colon, kidney, stomach .b 1025 to 1735 1 to 712       712/712
(100 %)
2 diff
(99.8 %id)
AL528476 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 1191 to 2037 907 to 18   tiling clone, fully sequenced,   890/907
(98 %)
40 diff
(95.6 %id)
BF057634 pooled germ cell tumors .b 1904 to 2429 541 to 16   tiling clone, AAA   526/526
(100 %)
2 diff
(99.7 %id)
AI623322 pooled germ cell tumors .b 1936 to 2429 509 to 16   AAA   494/494
(100 %)
9 diff
(98.2 %id)
AW140108   .b 1973 to 2429 474 to 18   AAA   457/457
(100 %)
0 diff
(100 %id)
AI521778 Kidney .b 2059 to 2422 364 to 1       364/364
(100 %)
0 diff
(100 %id)
AA905044 pooled .b 2121 to 2430 311 to 3   tiling clone,   309/311
(99 %)
0 diff
(100 %id)
CR613054 Neuroblastoma Cot 10-normalized .c 1 to 1560 1 to 1560 exact tiling clone,   1560/1560
(100 %)
0 diff
(100 %id)
AL520835 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 1 to 709 1 to 707 W136* fully sequenced,   707/707
(100 %)
2 diff
(99.8 %id)
CD104674 Pooled-Skin .c 4 to 379 1 to 379       379/670
(56 %)
6 diff
(99.2 %id)
BF692177 melanotic melanoma, high MDR, skin .c 16 to 750 1 to 723       723/894
(80 %)
47 diff
(94.8 %id)
BQ429720 testis .c 51 to 873 1 to 827       827/828
(99 %)
18 diff
(97.9 %id)
BF030310 hypernephroma, Kidney .c 85 to 677 1 to 597       597/902
(66 %)
19 diff
(97.9 %id)
BX097161 heart .c 98 to 782 1 to 686       686/686
(100 %)
1 diff
(99.9 %id)
W81629 heart .c 98 to 398 1 to 302       302/302
(100 %)
1 diff
(99.7 %id)
AW197515 pooled germ cell tumors .c 126 to 572 452 to 1       452/452
(100 %)
4 diff
(99.2 %id)
AA873606 Kidney .c 229 to 515 284 to 1       284/284
(100 %)
16 diff
(94.4 %id)
BE958548 brain, primitive neuroectoderm .c 305 to 928 1 to 617       617/862
(71 %)
29 diff
(96.7 %id)
BF694442 muscle (skeletal) .c 315 to 908 1 to 591       591/766
(77 %)
16 diff
(98.0 %id)
AA587424 breast .c 440 to 933 502 to 1       502/502
(100 %)
23 diff
(95.5 %id)
BQ429417 testis .c 457 to 1019 1 to 563       563/806
(69 %)
17 diff
(97.9 %id)
AI222194 pooled .c 562 to 889 334 to 7       328/334
(98 %)
0 diff
(100 %id)
AL520834 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 679 to 1560 882 to 1   fully sequenced,   882/882
(100 %)
4 diff
(99.6 %id)
AI129333 uterus .c 739 to 1264 528 to 3       526/528
(99 %)
0 diff
(100 %id)
AI300186 2 pooled tumors (clear cell type), Kidney .c 760 to 1264 509 to 5       505/509
(99 %)
0 diff
(100 %id)
AI093486 uterus .c 821 to 1264 448 to 5       444/448
(99 %)
0 diff
(100 %id)
W81371 heart .c 911 to 1261 351 to 1       351/366
(95 %)
6 diff
(98.4 %id)
AI936395 Kidney .c 1109 to 1539 432 to 1       432/432
(100 %)
3 diff
(99.4 %id)
BC090853 Peripheral Nervous System, dorsal rootganglion Gene HOXD8, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI