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Gene HOXD3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
37 supporting clones for gene HOXD3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC005124 Lung, small cell carcinoma .a 1 to 2299 1 to 2300 exact tiling clone, available from MGC, AAA   2300/2300
(100 %)
3 diff
(99.9 %id)
NM_006898.4   .a 1 to 2299 1 to 2299 exact RefSeq, AAA   2299/2299
(100 %)
0 diff
(100 %id)
BE797724 lung, small cell carcinoma .a 10 to 669 1 to 670       670/671
(99 %)
30 diff
(95.6 %id)
DR006177 Prostate .a 67 to 385 1 to 319       319/320
(99 %)
4 diff
(98.8 %id)
BC008789 Brain, neuroblastoma .a 87 to 2299 19 to 2231 exact available from MGC, AAA   2213/2222
(99 %)
8 diff
(99.7 %id)
CV026432 mixed .a 177 to 484 1 to 308       308/399
(77 %)
2 diff
(99.5 %id)
TI_1948128093   .a 177 to 885 140 to 854       715/1023
(69 %)
18 diff
(98.3 %id)
TI_1948128426   .a 177 to 715 134 to 673       540/1136
(47 %)
15 diff
(98.7 %id)
TI_1948128427   .a 177 to 846 138 to 806       669/1040
(64 %)
15 diff
(98.6 %id)
TI_1948128770   .a 177 to 855 137 to 818       682/1050
(64 %)
25 diff
(97.7 %id)
TI_1948129100   .a 177 to 721 131 to 676       546/1125
(48 %)
10 diff
(99.2 %id)
TI_1948129101   .a 177 to 816 134 to 778       645/1088
(59 %)
14 diff
(98.8 %id)
TI_1948129225   .a 177 to 846 140 to 817       678/1085
(62 %)
22 diff
(98.0 %id)
AA434183 ovarian tumor, ovary .a 417 to 906 1 to 490     Submitted on the opposite strand 490/490
(100 %)
13 diff
(97.4 %id)
TI_1948128095   .a 708 to 1474 893 to 121       773/972
(79 %)
0 diff
(100 %id)
TI_1948128772   .a 715 to 1474 887 to 122       766/966
(79 %)
0 diff
(100 %id)
TI_1948128094   .a 731 to 1474 871 to 123       749/1420
(52 %)
0 diff
(100 %id)
AI478225 Kidney .a 741 to 1482 734 to 1       734/734
(100 %)
15 diff
(98.0 %id)
AI521702 Kidney .a 806 to 1149 337 to 1       337/337
(100 %)
10 diff
(97.1 %id)
AW271503 Kidney .a 860 to 1448 587 to 1       587/587
(100 %)
6 diff
(99.0 %id)
TI_1948128771   .a 869 to 1474 741 to 130       612/1344
(45 %)
0 diff
(100 %id)
BF114998 Kidney .a 912 to 1481 570 to 1       570/570
(100 %)
1 diff
(99.9 %id)
AI927335 Kidney .a 938 to 1464 527 to 1       527/527
(100 %)
9 diff
(98.3 %id)
AI911593 Kidney .a 961 to 1464 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
AA991449 breast .a 983 to 1482 497 to 1       497/497
(100 %)
25 diff
(95.0 %id)
AW137579   .a 1078 to 1481 404 to 1       404/404
(100 %)
1 diff
(99.8 %id)
AI241266 Kidney .a 1139 to 1482 345 to 1   tiling clone,   345/436
(79 %)
3 diff
(99.4 %id)
BF739816 Kidney .a 1289 to 1464 176 to 1       176/176
(100 %)
0 diff
(100 %id)
AW138896   .a 1476 to 2060 1 to 583     Submitted on the opposite strand 583/587
(99 %)
6 diff
(99.0 %id)
AI373320 Kidney .a 1519 to 1940 1 to 425     Submitted on the opposite strand 425/425
(100 %)
2 diff
(99.6 %id)
AI758124 Kidney .a 1519 to 1886 1 to 376     Submitted on the opposite strand 376/379
(99 %)
11 diff
(97.1 %id)
BE463473 Kidney .a 1537 to 1986 1 to 450     Submitted on the opposite strand 450/450
(100 %)
1 diff
(99.8 %id)
AI955470 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1590 to 1858 277 to 9       269/288
(93 %)
0 diff
(100 %id)
AI769665 2 pooled tumors (clear cell type), Kidney .a 1734 to 2303 575 to 6   tiling clone,   570/575
(99 %)
0 diff
(100 %id)
BE348261 Kidney .a 1813 to 2299 488 to 2       487/488
(99 %)
0 diff
(100 %id)
AI373293 Kidney .a 1967 to 2298 332 to 1       332/332
(100 %)
0 diff
(100 %id)
AA847415 ovary .a 1988 to 2180 193 to 1       193/201
(96 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI