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Gene HOXB9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
149 supporting clones for gene HOXB9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA712230   .a 1 to 489 6 to 494   capped   493/493
(100 %)
2 diff
(99.6 %id)
NM_024017.4   .a 1 to 2692 2 to 2693 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2693/2693
(100 %)
0 diff
(100 %id)
DA696753   .a 1 to 521 2 to 522   tiling clone, capped   521/521
(100 %)
0 diff
(100 %id)
DA710227   .a 67 to 521 2 to 456   capped   455/455
(100 %)
0 diff
(100 %id)
DA537691 Kidney .a 106 to 338 2 to 234   capped   233/233
(100 %)
0 diff
(100 %id)
DA740922   .a 116 to 625 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
BF205444 muscle, rhabdomyosarcoma .a 117 to 798 1 to 676       676/676
(100 %)
10 diff
(98.6 %id)
BF305592 muscle, rhabdomyosarcoma .a 117 to 830 1 to 708       708/799
(88 %)
9 diff
(98.9 %id)
BI113866 muscle, rhabdomyosarcoma .a 117 to 932 1 to 819       819/825
(99 %)
20 diff
(97.6 %id)
TI_1948101087   .a 118 to 719 203 to 806       604/1132
(53 %)
25 diff
(97.8 %id)
DA748169   .a 128 to 684 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA740566   .a 132 to 624 2 to 495   capped   494/494
(100 %)
1 diff
(99.8 %id)
DA481140   .a 133 to 689 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA682762   .a 133 to 936 2 to 806   capped   805/805
(100 %)
14 diff
(98.3 %id)
DA685837   .a 133 to 673 2 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DA693018   .a 133 to 382 2 to 251   capped   250/250
(100 %)
0 diff
(100 %id)
DA693875   .a 133 to 713 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DA707488   .a 133 to 591 2 to 460   capped   459/459
(100 %)
0 diff
(100 %id)
DA719179   .a 133 to 703 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA743974   .a 133 to 686 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA748479   .a 133 to 692 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA750482   .a 133 to 703 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA753142   .a 133 to 553 2 to 422   capped   421/421
(100 %)
0 diff
(100 %id)
AA211845   .a 134 to 512 1 to 377       377/377
(100 %)
56 diff
(85.2 %id)
DA740909   .a 137 to 627 2 to 492   capped   491/491
(100 %)
1 diff
(99.8 %id)
AK315480   .a 142 to 956 1 to 815 exact     815/815
(100 %)
1 diff
(99.9 %id)
DA710825   .a 143 to 618 2 to 477   capped   476/476
(100 %)
1 diff
(99.8 %id)
DA738839   .a 143 to 683 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA750357   .a 143 to 720 2 to 583   capped   582/582
(100 %)
4 diff
(99.4 %id)
DA753062   .a 143 to 556 2 to 416   capped   415/415
(100 %)
2 diff
(99.6 %id)
BF803092 colon_ins .a 156 to 275 17 to 136       120/136
(88 %)
6 diff
(95.6 %id)
DA840185 placenta .a 161 to 721 2 to 564   capped   563/566
(99 %)
5 diff
(99.2 %id)
DA690760   .a 168 to 738 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA688290   .a 211 to 764 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA694206   .a 211 to 568 2 to 359   capped   358/358
(100 %)
0 diff
(100 %id)
DA753920   .a 220 to 680 2 to 463   capped   462/462
(100 %)
1 diff
(99.8 %id)
AK056123   .a 221 to 2697 1 to 2477   tiling clone, available from FLJ,   2477/2477
(100 %)
8 diff
(99.7 %id)
DA699287   .a 222 to 748 2 to 532   capped   531/535
(99 %)
5 diff
(99.1 %id)
DA749167   .a 222 to 787 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA711170   .a 239 to 756 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DA713461   .a 241 to 846 2 to 607   capped   606/606
(100 %)
0 diff
(100 %id)
DA687758   .a 289 to 829 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA689370   .a 299 to 842 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA705584   .a 299 to 756 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
DA748790   .a 301 to 869 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA753239   .a 307 to 790 2 to 486   capped   485/485
(100 %)
1 diff
(99.8 %id)
DA708043   .a 375 to 684 2 to 313   capped   312/313
(99 %)
4 diff
(98.8 %id)
BG832321 epithelioid carcinoma cell line, Pancreas .a 484 to 1118 1 to 666       666/927
(71 %)
55 diff
(94.1 %id)
BG830524 epithelioid carcinoma cell line, Pancreas .a 485 to 1220 1 to 737       737/901
(81 %)
16 diff
(98.3 %id)
BM748115 stomach .a 540 to 1127 1 to 591       591/593
(99 %)
9 diff
(98.5 %id)
BM784270 stomach .a 540 to 1154 1 to 615       615/615
(100 %)
0 diff
(100 %id)
BY996257   .a 573 to 1257 29 to 712       693/712
(97 %)
6 diff
(99.2 %id)
DA692409   .a 591 to 1147 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BY994137   .a 602 to 1339 9 to 746   tiling clone,   738/746
(98 %)
6 diff
(99.2 %id)
DA635242 Kidney .a 606 to 1181 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA047322   .a 607 to 1105 2 to 498   capped   497/497
(100 %)
2 diff
(99.6 %id)
DB008491 cervix, tumor tissue .a 611 to 1162 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CV347169 colon_ins .a 626 to 1253 33 to 652       620/653
(94 %)
14 diff
(97.9 %id)
DA749630   .a 662 to 1248 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA745932   .a 690 to 1263 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BQ304438 breast .a 721 to 1119 402 to 8       395/403
(98 %)
0 diff
(100 %id)
BQ322267 colon_est .a 782 to 1122 7 to 346       340/346
(98 %)
8 diff
(97.7 %id)
BG978362 colon_ins .a 812 to 1100 290 to 1       290/293
(98 %)
13 diff
(95.6 %id)
BF805030 colon_ins .a 830 to 1329 26 to 525       500/527
(94 %)
6 diff
(98.9 %id)
AW361923 colon .a 854 to 1318 469 to 4       466/479
(97 %)
0 diff
(100 %id)
BQ325463 colon_ins .a 864 to 1365 26 to 526       501/557
(89 %)
3 diff
(99.5 %id)
BF742449 breast .a 927 to 1124 197 to 3     Submitted on the opposite strand 195/197
(98 %)
0 diff
(100 %id)
BP260908 small intestine .a 942 to 1523 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP263465 small intestine .a 959 to 1537 1 to 579       579/582
(99 %)
20 diff
(96.6 %id)
DA694805   .a 1004 to 1585 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
BP254391 Kidney .a 1010 to 1581 1 to 572       572/572
(100 %)
5 diff
(99.2 %id)
BX114117   .a 1017 to 1685 1 to 669   tiling clone,   669/669
(100 %)
0 diff
(100 %id)
AA447441   .a 1017 to 1515 1 to 498       498/498
(100 %)
3 diff
(99.4 %id)
BE867137 adenocarcinoma, colon .a 1068 to 1629 1 to 559       559/564
(99 %)
7 diff
(98.8 %id)
BY995860   .a 1092 to 1786 1 to 696       696/696
(100 %)
7 diff
(99.0 %id)
BE869771 adenocarcinoma, colon .a 1115 to 1868 1 to 749       749/911
(82 %)
16 diff
(98.3 %id)
BG115740 duodenal adenocarcinoma, cell line, small intestine .a 1123 to 1789 26 to 686       661/1000
(66 %)
15 diff
(98.5 %id)
BF806083 colon_ins .a 1126 to 1370 267 to 25     Submitted on the opposite strand 243/267
(91 %)
0 diff
(100 %id)
BF804707 colon_ins .a 1127 to 1442 321 to 6     Submitted on the opposite strand 316/321
(98 %)
0 diff
(100 %id)
BF802150 colon_ins .a 1129 to 1447 322 to 3     Submitted on the opposite strand 320/324
(98 %)
0 diff
(100 %id)
AK026084   .a 1185 to 2654 1 to 1470   available from FLJ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1470/1470
(100 %)
3 diff
(99.8 %id)
BP255434 Kidney .a 1185 to 1765 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BF812918 colon_ins .a 1205 to 1685 485 to 5     Submitted on the opposite strand 481/597
(80 %)
0 diff
(100 %id)
BY993690   .a 1246 to 1982 29 to 766       738/766
(96 %)
6 diff
(99.3 %id)
BF766121 colon_est .a 1268 to 1673 1 to 406       406/406
(100 %)
3 diff
(99.3 %id)
BF812608 colon_ins .a 1338 to 1801 24 to 487       464/487
(95 %)
6 diff
(98.8 %id)
BF812707 colon_ins .a 1342 to 1819 16 to 492       477/492
(96 %)
6 diff
(98.8 %id)
BQ322840 colon_est .a 1344 to 1654 306 to 2       305/319
(95 %)
0 diff
(100 %id)
BF766672 colon_est .a 1377 to 1698 13 to 336       324/350
(92 %)
7 diff
(98.0 %id)
BY994867   .a 1388 to 2089 28 to 729       702/729
(96 %)
8 diff
(99.0 %id)
BY995290   .a 1388 to 2034 28 to 674       647/674
(95 %)
6 diff
(99.2 %id)
BF809097 colon_ins .a 1408 to 1880 481 to 10     Submitted on the opposite strand 472/481
(98 %)
0 diff
(100 %id)
BF762313 colon_est .a 1473 to 1861 1 to 389       389/389
(100 %)
5 diff
(98.8 %id)
BF809061 colon_ins .a 1527 to 1899 403 to 30     Submitted on the opposite strand 374/403
(92 %)
0 diff
(100 %id)
BF803372 colon_ins .a 1541 to 1928 12 to 397       386/398
(96 %)
11 diff
(97.3 %id)
BF766438 colon_est .a 1623 to 1974 352 to 1     Submitted on the opposite strand 352/352
(100 %)
3 diff
(99.2 %id)
AW881207 ovary .a 1704 to 1913 7 to 222       216/222
(97 %)
6 diff
(97.3 %id)
AW881257 ovary .a 1722 to 1913 8 to 199       192/199
(96 %)
6 diff
(97.0 %id)
BQ219022 epithelioid carcinoma, Pancreas .a 1764 to 2586 1 to 827       827/827
(100 %)
10 diff
(98.8 %id)
BG328517 adenocarcinoma cell line, colon .a 1786 to 2334 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
BF360883 ovary .a 1796 to 2027 1 to 230       230/233
(98 %)
7 diff
(97.0 %id)
AW372642 breast .a 1797 to 2263 1 to 467       467/468
(99 %)
2 diff
(99.6 %id)
BF763928 colon_est .a 1841 to 2206 7 to 372       366/372
(98 %)
6 diff
(98.4 %id)
BF763818 colon_est .a 1845 to 2251 26 to 431       406/431
(94 %)
6 diff
(98.7 %id)
BF760927 colon_est .a 1853 to 2272 14 to 431       418/431
(96 %)
6 diff
(98.7 %id)
BF326223 amnion_normal .a 1865 to 2129 19 to 284       266/286
(93 %)
6 diff
(98.0 %id)
BY993656   .a 1986 to 2566 25 to 606       582/606
(96 %)
6 diff
(99.1 %id)
TI_153990292   .a 2010 to 2651 736 to 96   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 641/641
(100 %)
18 diff
(97.2 %id)
TI_154067978   .a 2019 to 2697 786 to 109   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 678/678
(100 %)
32 diff
(95.3 %id)
CA426693 cell lines, Chondrosarcoma .a 2024 to 2697 687 to 14   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 674/674
(100 %)
1 diff
(99.9 %id)
BF763935 colon_est .a 2050 to 2292 1 to 240       240/240
(100 %)
5 diff
(98.0 %id)
AW973279   .a 2093 to 2653 561 to 1     Submitted on the opposite strand 561/561
(100 %)
0 diff
(100 %id)
DB296189   .a 2132 to 2692 562 to 1       562/562
(100 %)
1 diff
(99.9 %id)
AI763257 2 pooled tumors (clear cell type), Kidney .a 2141 to 2696 558 to 3       556/558
(99 %)
0 diff
(100 %id)
AI828957 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 2142 to 2653 512 to 1       512/512
(100 %)
1 diff
(99.9 %id)
AW206245   .a 2167 to 2651 502 to 18   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 485/485
(100 %)
2 diff
(99.6 %id)
AW237541 Kidney .a 2200 to 2338 140 to 2       139/140
(99 %)
0 diff
(100 %id)
AA204719   .a 2201 to 2697 487 to 1       487/576
(84 %)
15 diff
(97.4 %id)
DB322573   .a 2203 to 2697 491 to 1       491/495
(99 %)
13 diff
(97.4 %id)
BF001866 colon, colon tumor, RER+ .a 2221 to 2700 489 to 8       482/489
(98 %)
0 diff
(100 %id)
AI676071 Prostate .a 2228 to 2696 469 to 2       468/469
(99 %)
0 diff
(100 %id)
BF001538 colon, colon tumor, RER+ .a 2233 to 2615 14 to 396     Submitted on the opposite strand 383/396
(96 %)
6 diff
(98.5 %id)
BE350818 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2254 to 2698 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AA706441   .a 2259 to 2692 451 to 18   AAA Submitted on the opposite strand 434/434
(100 %)
3 diff
(99.4 %id)
AI285204 adenocarcinoma, colon .a 2268 to 2696 431 to 3       429/431
(99 %)
0 diff
(100 %id)
BM987589 mixed .a 2270 to 2700 446 to 16       431/446
(96 %)
0 diff
(100 %id)
BF761825 colon_est .a 2290 to 2543 1 to 252       252/265
(95 %)
7 diff
(97.4 %id)
AA634054   .a 2309 to 2691 383 to 1       383/383
(100 %)
1 diff
(99.8 %id)
AA551797 colon, tumor .a 2315 to 2652 338 to 1       338/338
(100 %)
1 diff
(99.8 %id)
DB323596   .a 2325 to 2697 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
AI263980 adenocarcinoma, colon .a 2328 to 2692 365 to 1       365/365
(100 %)
5 diff
(98.7 %id)
AI348068 adenocarcinoma, colon .a 2328 to 2697 370 to 1       370/370
(100 %)
5 diff
(98.7 %id)
AA857205 adenocarcinoma, colon .a 2334 to 2692 357 to 1       357/357
(100 %)
5 diff
(98.6 %id)
AI695505 colon .a 2339 to 2692 355 to 1       355/355
(100 %)
3 diff
(99.2 %id)
BF939270 Prostate .a 2355 to 2700 347 to 2       346/347
(99 %)
0 diff
(100 %id)
BF478046 Prostate .a 2355 to 2700 346 to 1   tiling clone,   346/346
(100 %)
0 diff
(100 %id)
BF763920 colon_est .a 2360 to 2543 206 to 17     Submitted on the opposite strand 190/206
(92 %)
0 diff
(100 %id)
AA447442   .a 2374 to 2658 285 to 1       285/285
(100 %)
6 diff
(97.9 %id)
AI343354 colon, colon tumor, RER+ .a 2391 to 2700 325 to 16       310/325
(95 %)
0 diff
(100 %id)
AI264382 adenocarcinoma, colon .a 2404 to 2697 295 to 1       295/298
(98 %)
2 diff
(99.4 %id)
AA628826   .a 2409 to 2693 287 to 2       286/287
(99 %)
0 diff
(100 %id)
AI352287   .a 2426 to 2692 280 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 267/267
(100 %)
1 diff
(99.7 %id)
AI766491 colon, colon tumor, RER+ .a 2428 to 2698 273 to 1       273/273
(100 %)
3 diff
(99.0 %id)
AW078582 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2489 to 2698 210 to 1       210/210
(100 %)
0 diff
(100 %id)
AK056414   Gene HOXB9, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BC015565 Muscle, rhabdomyosarcoma Gene HOXB9, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
CV027874 mixed Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
AI343498 colon, colon tumor, RER+ Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
AI760598 colon, colon tumor, RER+ Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
AI761312 colon, colon tumor, RER+ Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
AI761775 colon, colon tumor, RER+ Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
BF063337 colon, colon tumor, RER+ Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
DB324616   Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
DA739338   Gene HOXB9, variant not shown       capped Suspected internal deletion, this clone was ignored    
TI_1948101232   Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
TI_1948101233   Gene HOXB9, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI