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Gene HLA-ETABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
659 representative clones for gene HLA-E back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC364942 esophagus .a 1 to 552 1 to 552   tiling clone,   552/552
(100 %)
0 diff
(100 %id)
DC392085 Spleen .a 2 to 539 1 to 538       538/538
(100 %)
2 diff
(99.7 %id)
CB131785 Liver .a 3 to 192 1 to 190       190/190
(100 %)
0 diff
(100 %id)
AK296822 tongue, tumor tissue .a 4 to 1488 1 to 1485 T302A tiling clone,   1485/1485
(100 %)
1 diff
(100.0 %id)
DC346537 tongue, tumor tissue .a 4 to 561 1 to 558       558/558
(100 %)
0 diff
(100 %id)
BP235946 coronary artery .a 4 to 584 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
DC358279 lung .a 4 to 559 1 to 556       556/556
(100 %)
2 diff
(99.7 %id)
DC429123   .a 4 to 545 1 to 542       542/542
(100 %)
3 diff
(99.5 %id)
BP339168 Spleen .a 4 to 586 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DC392164 stomach .a 4 to 520 1 to 517       517/517
(100 %)
1 diff
(99.9 %id)
DC392230 stomach .a 4 to 542 1 to 539       539/539
(100 %)
2 diff
(99.7 %id)
DC392620 stomach .a 4 to 575 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC394475 esophageal, tumor tissue .a 4 to 561 1 to 558       558/558
(100 %)
3 diff
(99.5 %id)
BI603772 brain, hypothalamus .a 5 to 704 8 to 711       704/712
(98 %)
9 diff
(98.8 %id)
BI598429 brain, hypothalamus .a 5 to 741 8 to 744       737/744
(99 %)
11 diff
(98.6 %id)
TI_45210290   .a 5 to 704 90 to 793       704/794
(88 %)
9 diff
(98.9 %id)
TI_45212319   .a 5 to 741 87 to 823       737/823
(89 %)
11 diff
(98.7 %id)
BM044905 carcinoma, cell line, Prostate .a 13 to 885 1 to 866       866/902
(96 %)
36 diff
(96.1 %id)
BQ642736 lymph, lymphoma, cell line .a 22 to 764 1 to 754       754/998
(75 %)
26 diff
(97.4 %id)
BE512926 adenocarcinoma cell line, colon .a 26 to 764 1 to 747       747/747
(100 %)
15 diff
(98.0 %id)
CO248553 Chondrosarcoma Lung Metastasis cell lines, lung .a 29 to 617 44 to 623       580/758
(76 %)
18 diff
(97.7 %id)
BE304794 adenocarcinoma cell line, colon .a 30 to 674 1 to 644       644/644
(100 %)
14 diff
(97.9 %id)
BE907564 epithelioid carcinoma, Pancreas .a 48 to 763 1 to 710       710/952
(74 %)
13 diff
(98.7 %id)
NM_005516.5   .b 1 to 2661 1 to 2661 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2661/2661
(100 %)
0 diff
(100 %id)
DC379188 pericardium .b 14 to 581 1 to 568   tiling clone,   568/568
(100 %)
2 diff
(99.7 %id)
AK292391 testis .b 49 to 1614 1 to 1566 A156T V318L     1566/1566
(100 %)
4 diff
(99.8 %id)
DC380900 placenta .b 49 to 627 1 to 580       578/580
(99 %)
2 diff
(99.7 %id)
DC399678 testis .b 49 to 586 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DC392661 stomach .b 71 to 626 1 to 558       558/558
(100 %)
3 diff
(99.5 %id)
DC421353 uterus .b 77 to 616 1 to 540       540/540
(100 %)
2 diff
(99.7 %id)
DC300695 bladder .b 86 to 642 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DC297569   .b 99 to 623 1 to 525       525/525
(100 %)
0 diff
(100 %id)
DC391667 Spleen .b 99 to 653 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
DA586489 lung .b 101 to 628 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA949934 Spleen .b 101 to 661 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AK098434 thyroid .b 104 to 1764 1 to 1661 G128R P297Q available from FLJ,   1661/1661
(100 %)
3 diff
(99.9 %id)
AU279942   .b 104 to 611 1 to 508       508/508
(100 %)
0 diff
(100 %id)
DA581113 lung .b 104 to 644 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BP255938 Kidney .b 104 to 684 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP300754   .b 104 to 654 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BM818977 stomach .b 104 to 642 1 to 539       539/539
(100 %)
0 diff
(100 %id)
BP333972 salivary gland .b 104 to 680 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DB192018 ovary, tumor tissue .b 104 to 663 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BP295567   .b 105 to 686 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA958941 Spleen .b 105 to 662 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA079403 cerebellum .b 106 to 678 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA824938 pericardium .b 106 to 655 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BP330479 rectum .b 106 to 693 1 to 588       588/588
(100 %)
0 diff
(100 %id)
BP198924 brain .b 107 to 678 1 to 572       572/572
(100 %)
0 diff
(100 %id)
AK225048 adipose tissue .b 107 to 1750 1 to 1644 E79G G128R S333G AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 1644/1644
(100 %)
6 diff
(99.7 %id)
AK314411 testis .b 107 to 1203 1 to 1097 N148D     1097/1097
(100 %)
2 diff
(99.9 %id)
DB505056 hypothalamus .b 107 to 585 1 to 479       479/479
(100 %)
3 diff
(99.4 %id)
BP254884 Kidney .b 107 to 690 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP255755 Kidney .b 107 to 687 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP255880 Kidney .b 107 to 688 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP294699   .b 107 to 687 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP295297   .b 107 to 661 1 to 555       555/555
(100 %)
0 diff
(100 %id)
BP297525   .b 107 to 667 1 to 561       561/561
(100 %)
0 diff
(100 %id)
BP298614   .b 107 to 671 1 to 565       565/565
(100 %)
0 diff
(100 %id)
BP302918   .b 107 to 687 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA763063 tongue .b 107 to 616 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
DA055458 cerebellum .b 108 to 664 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA064471 cerebellum .b 108 to 669 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA132462 alzheimer cortex .b 108 to 611 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DA135476 alzheimer cortex .b 108 to 745 2 to 639   capped   638/638
(100 %)
0 diff
(100 %id)
DA426336 colon .b 108 to 664 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA429377 colon .b 108 to 616 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA565863 heart .b 108 to 671 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA584210 lung .b 108 to 651 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA588065 lung .b 108 to 678 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA588985 lung .b 108 to 679 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA589627 lung .b 108 to 663 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA592640 lung .b 108 to 666 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA593200 lung .b 108 to 677 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA942178 Spleen .b 108 to 616 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA943142 Spleen .b 108 to 692 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB270675 uterus .b 108 to 671 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BP253085 Kidney .b 110 to 690 1 to 581       581/581
(100 %)
0 diff
(100 %id)
AL538226 brain, fetal brain .b 115 to 1135 14 to 1034       1021/1038
(98 %)
13 diff
(98.8 %id)
BM927452 lymph, lymphoma, cell line .b 115 to 1081 1 to 968       968/1041
(92 %)
18 diff
(98.3 %id)
BQ052629 blood, natural killer cells, cell line .b 115 to 1004 1 to 900       900/1030
(87 %)
21 diff
(98.0 %id)
BQ053757 blood, natural killer cells, cell line .b 115 to 965 1 to 864       864/986
(87 %)
17 diff
(98.3 %id)
DN949485.
matches multiple genes
Pancreas, Purified pancreatic islet .b 118 to 617 1 to 500     Submitted on the opposite strand, also hits gene VPS53 500/500
(100 %)
4 diff
(99.2 %id)
BX439073 placenta .b 119 to 1135 1 to 1003       1003/1007
(99 %)
25 diff
(97.6 %id)
BX421485 B cells (Ramos cell line) .b 119 to 997 1 to 878       878/878
(100 %)
3 diff
(99.7 %id)
BQ224828 embryonal carcinoma, cell line, testis .b 119 to 934 1 to 831       831/934
(88 %)
25 diff
(97.4 %id)
CR619908 T cells (Jurkat cell line) .b 120 to 1790 1 to 1671 G128R     1671/1671
(100 %)
3 diff
(99.9 %id)
BM550168 astrocytoma grade IV, cell line, brain .b 120 to 934 1 to 822       822/1022
(80 %)
14 diff
(98.7 %id)
M20022   .b 120 to 1783 1 to 1665 L10S G128R     1665/1665
(100 %)
7 diff
(99.6 %id)
CD620627   .b 121 to 582 471 to 11       461/477
(96 %)
2 diff
(99.6 %id)
BM918109 blood, natural killer cells, cell line .b 121 to 945 1 to 826       826/1060
(77 %)
7 diff
(99.4 %id)
BQ052716 blood, natural killer cells, cell line .b 121 to 1012 1 to 894       894/990
(90 %)
11 diff
(98.9 %id)
CD620620   .b 122 to 781 660 to 1       660/660
(100 %)
7 diff
(99.0 %id)
CR610198 B cells (Ramos cell line) .b 122 to 1700 1 to 1579 G128R     1579/1579
(100 %)
2 diff
(99.9 %id)
BG685331 B-cells, primary B-cells from tonsils (cell line) .b 123 to 277 1 to 155       155/155
(100 %)
0 diff
(100 %id)
BM811135 amelanotic melanoma, cell line, skin .b 124 to 1108 1 to 993       990/998
(99 %)
31 diff
(96.9 %id)
BQ051526 blood, natural killer cells, cell line .b 124 to 1029 1 to 908       908/908
(100 %)
10 diff
(98.9 %id)
DR158557 human embryonic stem cells differentiated toan early endodermal cell type .b 124 to 941 1 to 818       818/818
(100 %)
0 diff
(100 %id)
CD620629   .b 125 to 582 463 to 7       457/465
(98 %)
4 diff
(99.2 %id)
BY994979   .b 125 to 799 29 to 703       675/703
(96 %)
7 diff
(99.1 %id)
AJ293263   .b 127 to 1203 1 to 1077 exact     1077/1077
(100 %)
1 diff
(100.0 %id)
AJ293264   .b 127 to 1203 1 to 1077 G128R     1077/1077
(100 %)
2 diff
(99.9 %id)
AY216681   .b 127 to 1203 1 to 1077 exact     1077/1077
(100 %)
1 diff
(100.0 %id)
AY221103   .b 127 to 1203 1 to 1077 exact     1077/1077
(100 %)
2 diff
(99.9 %id)
BX459086 placenta .b 127 to 1121 1 to 986       986/995
(99 %)
18 diff
(98.2 %id)
BU859009 ovary, teratocarcinoma, cell line .b 128 to 936 1 to 815       815/898
(90 %)
12 diff
(98.7 %id)
TI_1948092801   .b 128 to 737 127 to 737   fully sequenced,   611/737
(82 %)
16 diff
(97.9 %id)
TI_154187406   .b 128 to 951 127 to 938       812/946
(85 %)
22 diff
(97.7 %id)
CD620631   .b 129 to 582 463 to 11       453/470
(96 %)
2 diff
(99.6 %id)
CD620637   .b 129 to 790 668 to 11       658/675
(97 %)
6 diff
(99.2 %id)
CR624610 thymus .b 129 to 1742 1 to 1614       1614/1614
(100 %)
2 diff
(99.9 %id)
CA392748 eye, RPE/choroid .b 129 to 704 1 to 576       576/576
(100 %)
0 diff
(100 %id)
BC004297 Pancreas, adenocarcinoma .b 129 to 1750 1 to 1622   available from MGC, AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 1622/1622
(100 %)
2 diff
(99.9 %id)
BG754928 B-cells, primary B-cells from tonsils (cell line) .b 129 to 1018 1 to 895       895/910
(98 %)
20 diff
(97.9 %id)
TI_1948092648   .b 129 to 788 132 to 796   fully sequenced, AAA   665/796
(83 %)
13 diff
(98.4 %id)
CR626013 B cells (Ramos cell line) Cot 25-normalized .b 130 to 1709 1 to 1580       1580/1580
(100 %)
2 diff
(99.9 %id)
BI818829 pooled brain, lung, testis .b 130 to 866 1 to 737       737/737
(100 %)
1 diff
(99.9 %id)
BM469085 duodenal adenocarcinoma, cell line, small intestine .b 130 to 911 1 to 798       798/978
(81 %)
20 diff
(98.0 %id)
BM562466 duodenal adenocarcinoma, cell line, small intestine .b 130 to 1081 1 to 959       959/1018
(94 %)
17 diff
(98.4 %id)
BQ056673 lymph, lymphoma, cell line .b 130 to 1017 1 to 906       906/1009
(89 %)
38 diff
(96.3 %id)
BQ065755 lymph, lymphoma, cell line .b 130 to 1011 1 to 889       889/1024
(86 %)
16 diff
(98.5 %id)
BQ052140 blood, natural killer cells, cell line .b 130 to 1018 1 to 891       891/1062
(83 %)
13 diff
(98.8 %id)
BU174516 ductal carcinoma, cell line, Pancreas .b 130 to 944 1 to 822       822/839
(97 %)
22 diff
(97.4 %id)
BU163556 ductal carcinoma, cell line, Pancreas .b 130 to 967 1 to 844       844/845
(99 %)
12 diff
(98.6 %id)
BQ685739 ductal carcinoma, cell line, Pancreas .b 130 to 1018 1 to 893       893/924
(96 %)
13 diff
(98.6 %id)
BQ643373 lymph, lymphoma, cell line .b 130 to 1018 1 to 888       888/918
(96 %)
11 diff
(98.9 %id)
BU553743 ovary, teratocarcinoma, cell line .b 130 to 1012 1 to 885       885/909
(97 %)
3 diff
(99.7 %id)
TI_57200117   .b 130 to 866 65 to 801       737/801
(92 %)
7 diff
(99.2 %id)
BQ717597 sympathetic trunk .b 132 to 931 1 to 818       818/933
(87 %)
26 diff
(97.3 %id)
F05537 brain, total brain .b 133 to 390 1 to 258       258/258
(100 %)
0 diff
(100 %id)
BG491647 amelanotic melanoma, cell line, skin .b 133 to 995 1 to 863   fully sequenced,   863/863
(100 %)
12 diff
(98.7 %id)
TI_59383349   .b 133 to 912 58 to 832       775/777
(99 %)
15 diff
(98.1 %id)
AB209870 aorta endothelial cell .b 134 to 2656 1 to 2523   tiling clone,   2523/2523
(100 %)
2 diff
(100.0 %id)
CA392795 eye, RPE/choroid .b 134 to 706 1 to 573       573/573
(100 %)
0 diff
(100 %id)
CA392815 eye, RPE/choroid .b 134 to 198 1 to 65       65/65
(100 %)
0 diff
(100 %id)
BM555389 amelanotic melanoma, cell line, skin .b 134 to 1018 1 to 887       887/998
(88 %)
16 diff
(98.4 %id)
BM811324 amelanotic melanoma, cell line, skin .b 135 to 922 1 to 796       796/1059
(75 %)
16 diff
(98.5 %id)
BM911840 amelanotic melanoma, cell line, skin .b 135 to 922 1 to 799       799/999
(79 %)
18 diff
(98.2 %id)
BM912154 amelanotic melanoma, cell line, skin .b 135 to 948 1 to 824       824/1064
(77 %)
19 diff
(98.3 %id)
BM912883 amelanotic melanoma, cell line, skin .b 135 to 978 1 to 851       851/1027
(82 %)
14 diff
(98.7 %id)
BQ053212 blood, natural killer cells, cell line .b 135 to 1066 1 to 934       934/1011
(92 %)
13 diff
(98.8 %id)
TI_59385194   .b 136 to 926 110 to 913       804/805
(99 %)
19 diff
(97.7 %id)
TI_154137510   .b 136 to 934 77 to 893       817/831
(98 %)
39 diff
(95.4 %id)
TI_154141057   .b 136 to 719 80 to 662       583/586
(99 %)
9 diff
(98.5 %id)
TI_154147705   .b 136 to 823 80 to 766       687/688
(99 %)
12 diff
(98.3 %id)
TI_154185883   .b 136 to 838 120 to 817       698/942
(74 %)
22 diff
(97.7 %id)
TI_154186755   .b 136 to 1099 21 to 962       942/1042
(90 %)
53 diff
(95.0 %id)
CF552473 Pooled muscle (cardiac and skeletal) .b 141 to 938 1 to 809       809/869
(93 %)
13 diff
(98.6 %id)
BM552783 astrocytoma grade IV, cell line, brain .b 143 to 1012 1 to 873   AAA   873/1014
(86 %)
10 diff
(99.1 %id)
TI_154185939   .b 145 to 950 114 to 910       797/952
(83 %)
14 diff
(98.6 %id)
TI_154192888   .b 147 to 995 46 to 887       842/984
(85 %)
11 diff
(98.9 %id)
TI_154197226   .b 147 to 984 63 to 894       832/1000
(83 %)
40 diff
(96.0 %id)
AH002787 inflamed joint .b 155 to 1655 1 to 1486       1486/1527
(97 %)
24 diff
(98.5 %id)
M31183   .b 155 to 1655 1 to 1486       1486/1527
(97 %)
24 diff
(98.5 %id)
TI_154138796   .b 158 to 690 81 to 614       534/534
(100 %)
4 diff
(99.3 %id)
TI_154188515   .b 158 to 960 117 to 914       798/905
(88 %)
17 diff
(98.2 %id)
TI_154185467   .b 160 to 947 116 to 900       785/1005
(78 %)
37 diff
(96.4 %id)
BM803187 duodenal adenocarcinoma, cell line, small intestine .b 170 to 1073 1 to 901       901/968
(93 %)
13 diff
(98.7 %id)
CT002056 T-Lymphocytes .b 172 to 917 1 to 747       747/747
(100 %)
2 diff
(99.8 %id)
CR979918 T-Lymphocytes .b 178 to 942 1 to 765       765/765
(100 %)
0 diff
(100 %id)
CR987996 T-Lymphocytes .b 180 to 881 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
L78455 blood .b 191 to 735 1 to 546       546/546
(100 %)
2 diff
(99.7 %id)
L78934 blood .b 191 to 736 1 to 546       546/546
(100 %)
2 diff
(99.7 %id)
CR986841 T-Lymphocytes .b 213 to 1065 1 to 857       857/857
(100 %)
4 diff
(99.6 %id)
AI214126 astrocytoma, brain .b 214 to 720 1 to 501     Submitted on the opposite strand 501/501
(100 %)
24 diff
(95.3 %id)
AI214149 astrocytoma, brain .b 214 to 676 1 to 457     Submitted on the opposite strand 457/469
(97 %)
20 diff
(95.8 %id)
CR990269 T-Lymphocytes .b 271 to 942 1 to 672       672/672
(100 %)
0 diff
(100 %id)
CD620615   .b 288 to 902 630 to 18       613/630
(97 %)
6 diff
(99.1 %id)
CT000056 T-Lymphocytes .b 297 to 1087 1 to 793       793/793
(100 %)
2 diff
(99.8 %id)
CD620636   .b 320 to 1009 708 to 20       689/708
(97 %)
4 diff
(99.5 %id)
BI027842 marrow .b 357 to 836 480 to 1       480/480
(100 %)
6 diff
(98.8 %id)
BF991788 placenta_normal .b 378 to 593 224 to 12       213/236
(90 %)
6 diff
(97.5 %id)
CD620623   .b 378 to 1093 727 to 17       711/747
(95 %)
15 diff
(98.0 %id)
BY995952   .b 384 to 1106 25 to 747       723/747
(96 %)
6 diff
(99.2 %id)
BG340734 B-cells, primary B-cells from tonsils (cell line) .b 400 to 1109 1 to 709       709/1009
(70 %)
10 diff
(99.1 %id)
BE617241 adenocarcinoma, colon .b 481 to 1134 1 to 656       656/1213
(54 %)
6 diff
(99.6 %id)
BM050102 epithelioid carcinoma cell line, Pancreas .b 482 to 1130 1 to 649       550/677
(81 %)
59 diff
(91.3 %id)
BE185752 head_neck .b 516 to 714 199 to 2     Submitted on the opposite strand 198/202
(98 %)
0 diff
(100 %id)
BY994182   .b 521 to 1261 13 to 753       741/753
(98 %)
5 diff
(99.4 %id)
BQ708753 Spleen .b 553 to 1211 1 to 662       662/937
(70 %)
8 diff
(99.2 %id)
CF131281 Chondrosarcoma Lung Metastasis cell lines, lung .b 564 to 1282 1 to 719       719/719
(100 %)
0 diff
(100 %id)
TI_159676350   .b 564 to 1463 53 to 940       888/1043
(85 %)
13 diff
(98.8 %id)
BE531271 adenocarcinoma, Pancreas .b 577 to 1255 1 to 677       677/939
(72 %)
6 diff
(99.4 %id)
BP421852 small intestine .b 594 to 1128 1 to 535     Submitted on the opposite strand 535/537
(99 %)
1 diff
(99.9 %id)
BQ940569 epidermoid carcinoma, cell line, lung .b 610 to 1516 1 to 919       919/934
(98 %)
14 diff
(98.6 %id)
BI056163 placenta_normal .b 625 to 1034 412 to 1       412/412
(100 %)
10 diff
(97.6 %id)
BM917300 blood, natural killer cells, cell line .b 628 to 1336 1 to 720       720/1176
(61 %)
19 diff
(98.4 %id)
BI025090 marrow .b 670 to 1053 391 to 5       387/391
(98 %)
8 diff
(98.0 %id)
BG698804 skin .b 677 to 1500 1 to 825       825/826
(99 %)
12 diff
(98.6 %id)
CD620634   .b 682 to 1063 399 to 19       381/406
(93 %)
1 diff
(99.8 %id)
BM917095 blood, natural killer cells, cell line .b 705 to 1540 1 to 850       850/1124
(75 %)
28 diff
(97.6 %id)
TI_1948092802   .b 706 to 1202 625 to 126   fully sequenced,   500/625
(80 %)
8 diff
(98.8 %id)
BI022399 marrow .b 708 to 993 285 to 1       285/289
(98 %)
4 diff
(98.7 %id)
CR993833 T-Lymphocytes .b 712 to 1634 1 to 922       922/922
(100 %)
3 diff
(99.7 %id)
AW374867.
matches multiple genes
colon .b 735 to 1044 12 to 320     also hits gene HLA-BandHLA-C, HLA_ 309/320
(96 %)
8 diff
(97.5 %id)
AW752373.
matches multiple genes
colon .b 738 to 1109 25 to 397     also hits gene HLA-L 373/397
(93 %)
15 diff
(96.3 %id)
CD516852 White Matter .b 742 to 1635 28 to 924       897/928
(96 %)
14 diff
(98.5 %id)
AW388068 stomach .b 748 to 900 165 to 21       145/165
(87 %)
0 diff
(100 %id)
TI_59394149   .b 754 to 1438 55 to 741       687/687
(100 %)
2 diff
(99.8 %id)
TI_1948092649   .b 758 to 1202 571 to 126   fully sequenced,   446/571
(78 %)
3 diff
(99.5 %id)
AW797538 uterus .b 759 to 1180 424 to 3       422/424
(99 %)
4 diff
(99.1 %id)
AW375984 colon .b 766 to 927 164 to 1       164/164
(100 %)
8 diff
(95.2 %id)
CD620639   .b 766 to 1486 729 to 8       722/729
(99 %)
4 diff
(99.5 %id)
BQ639905 eye, retina .b 766 to 1383 1 to 618       618/618
(100 %)
0 diff
(100 %id)
AW794148 uterus .b 785 to 1083 307 to 13       295/307
(96 %)
1 diff
(99.7 %id)
AW753749 colon .b 786 to 1045 266 to 5       262/274
(95 %)
25 diff
(90.9 %id)
BE774183 uterus .b 796 to 1070 324 to 53       272/324
(83 %)
16 diff
(95.1 %id)
TI_57230600   .b 809 to 1519 83 to 792       710/710
(100 %)
2 diff
(99.8 %id)
CV338957 breast .b 814 to 1371 568 to 17     Submitted on the opposite strand 552/577
(95 %)
19 diff
(96.8 %id)
BU071157 insulinoma, Pancreas .b 814 to 1381 1 to 568   fully sequenced, Submitted on the opposite strand 568/568
(100 %)
0 diff
(100 %id)
BY996084   .b 815 to 1457 23 to 665       643/665
(96 %)
6 diff
(99.1 %id)
BE615738 adenocarcinoma, Pancreas .b 818 to 1546 1 to 735       735/806
(91 %)
8 diff
(99.1 %id)
AV656028 corresponding non cancerous liver tissue .b 822 to 1134 1 to 313     Submitted on the opposite strand 313/344
(90 %)
4 diff
(98.9 %id)
AW797459 uterus .b 825 to 1233 417 to 8       410/417
(98 %)
4 diff
(99.1 %id)
BQ052969 blood, natural killer cells, cell line .b 830 to 1804 1 to 996       996/1053
(94 %)
42 diff
(96.1 %id)
AA866087 Kidney, kidney tumor .b 839 to 1399 1 to 559     Submitted on the opposite strand 559/559
(100 %)
11 diff
(98.1 %id)
X56841 blood .b 840 to 2651 1 to 1809       1809/1817
(99 %)
11 diff
(99.4 %id)
AI940341 colon .b 848 to 1084 237 to 1       237/241
(98 %)
27 diff
(88.8 %id)
AI940382 colon .b 848 to 1084 237 to 1       237/241
(98 %)
27 diff
(88.8 %id)
TI_149314910   .b 852 to 1613 809 to 55       757/1064
(71 %)
12 diff
(98.9 %id)
AW384737 head_neck .b 858 to 1102 6 to 250       245/255
(96 %)
17 diff
(93.4 %id)
TI_59382746   .b 859 to 1497 60 to 721       660/829
(79 %)
37 diff
(95.6 %id)
AW384734 head_neck .b 863 to 1102 14 to 253       240/258
(93 %)
19 diff
(92.7 %id)
CV339009 breast .b 871 to 1523 650 to 7     Submitted on the opposite strand 644/688
(93 %)
17 diff
(97.6 %id)
CV338935 breast .b 874 to 1525 646 to 3     Submitted on the opposite strand 644/675
(95 %)
13 diff
(98.1 %id)
AW609086 stomach .b 885 to 1524 645 to 10       636/646
(98 %)
4 diff
(99.4 %id)
CV338983 breast .b 885 to 1510 636 to 16     Submitted on the opposite strand 621/667
(93 %)
11 diff
(98.4 %id)
AW380132 head_neck .b 889 to 1409 542 to 23       520/546
(95 %)
4 diff
(99.3 %id)
AW391270 stomach .b 889 to 1433 567 to 21       547/571
(95 %)
3 diff
(99.5 %id)
AW391274 stomach .b 889 to 1433 575 to 30       546/579
(94 %)
3 diff
(99.5 %id)
BG978999 colon_normal .b 892 to 1083 215 to 25       191/221
(86 %)
14 diff
(93.7 %id)
AW389462 stomach .b 898 to 1019 151 to 30       122/151
(80 %)
0 diff
(100 %id)
AW389487 stomach .b 898 to 1102 205 to 1       205/205
(100 %)
0 diff
(100 %id)
CV338974 breast .b 899 to 1510 626 to 20     Submitted on the opposite strand 607/628
(96 %)
5 diff
(99.3 %id)
CV338978 breast .b 899 to 1523 621 to 1     Submitted on the opposite strand 621/626
(99 %)
13 diff
(98.0 %id)
CV339006 breast .b 899 to 1525 621 to 2     Submitted on the opposite strand 620/648
(95 %)
13 diff
(98.0 %id)
BF818911 colon_ins .b 908 to 1276 22 to 390       369/390
(94 %)
8 diff
(98.0 %id)
BF374553 stomach .b 910 to 1485 582 to 5       578/583
(99 %)
0 diff
(100 %id)
BF849333 lung_normal .b 912 to 1103 26 to 215       190/216
(87 %)
16 diff
(92.6 %id)
BI029428 marrow .b 913 to 1225 313 to 1       313/313
(100 %)
1 diff
(99.7 %id)
AW388080 stomach .b 915 to 1526 609 to 1       609/609
(100 %)
9 diff
(98.6 %id)
BQ053656 blood, natural killer cells, cell line .b 917 to 1624 1 to 713       713/975
(73 %)
6 diff
(99.4 %id)
CV338900 breast .b 921 to 1522 600 to 1     Submitted on the opposite strand 600/604
(99 %)
11 diff
(98.2 %id)
BE563092 adenocarcinoma, Pancreas .b 921 to 1601 1 to 682       682/811
(84 %)
3 diff
(99.7 %id)
TI_149286856   .b 925 to 1764 881 to 47   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 835/1132
(73 %)
32 diff
(97.2 %id)
C03500 heart .b 926 to 1222 1 to 303       303/303
(100 %)
9 diff
(97.1 %id)
BF757916 colon .b 927 to 1095 198 to 30     Submitted on the opposite strand 169/198
(85 %)
8 diff
(96.0 %id)
BG960590 colon .b 927 to 1211 296 to 5       292/296
(98 %)
16 diff
(94.6 %id)
CV338924 breast .b 931 to 1526 602 to 12     Submitted on the opposite strand 591/727
(81 %)
9 diff
(98.8 %id)
CV338973 breast .b 937 to 1525 590 to 3     Submitted on the opposite strand 588/592
(99 %)
0 diff
(100 %id)
AA196126 muscle, skeletal muscle .b 937 to 1193 1 to 257   fully sequenced,   257/257
(100 %)
0 diff
(100 %id)
BF845482 head_neck .b 941 to 1426 512 to 27     Submitted on the opposite strand 486/512
(94 %)
1 diff
(99.9 %id)
CV338921 breast .b 942 to 1525 596 to 11     Submitted on the opposite strand 583/596
(97 %)
15 diff
(97.5 %id)
AW998875 breast_normal .b 944 to 1278 350 to 16     Submitted on the opposite strand 335/369
(90 %)
1 diff
(99.8 %id)
BF327118 breast_normal .b 944 to 1257 314 to 1       314/322
(97 %)
4 diff
(98.8 %id)
CV338929 breast .b 947 to 1523 592 to 18     Submitted on the opposite strand 575/592
(97 %)
12 diff
(98.0 %id)
CV338946 breast .b 948 to 1460 516 to 1     Submitted on the opposite strand 516/516
(100 %)
8 diff
(98.5 %id)
BG979063 colon_normal .b 949 to 1107 182 to 25       158/182
(86 %)
6 diff
(96.8 %id)
AW388087 stomach .b 950 to 1519 578 to 9       570/578
(98 %)
0 diff
(100 %id)
TI_154128234   .b 954 to 1764 891 to 86   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 806/952
(84 %)
13 diff
(98.7 %id)
BM853666 Ascites, stomach .b 956 to 1127 1 to 172       172/172
(100 %)
16 diff
(90.7 %id)
X64879 B-LCL .b 957 to 2650 1 to 1692       1692/1692
(100 %)
6 diff
(99.7 %id)
AA369372 placenta .b 961 to 1204 1 to 244       244/245
(99 %)
3 diff
(98.8 %id)
AW606608 head_neck .b 963 to 1554 593 to 1       593/630
(94 %)
8 diff
(98.8 %id)
AW606621 head_neck .b 963 to 1554 590 to 1       590/599
(98 %)
11 diff
(98.2 %id)
BG491887 amelanotic melanoma, cell line, skin .b 965 to 1723 763 to 1   fully sequenced,   763/763
(100 %)
11 diff
(98.6 %id)
AW606611 head_neck .b 971 to 1560 603 to 14       590/603
(97 %)
3 diff
(99.6 %id)
CV383458 head_neck .b 973 to 1502 545 to 15     Submitted on the opposite strand 531/547
(97 %)
4 diff
(99.3 %id)
CD620625   .b 974 to 1295 8 to 329       322/346
(93 %)
8 diff
(97.7 %id)
CD620626   .b 974 to 1295 337 to 16       322/344
(93 %)
0 diff
(100 %id)
TI_154101201   .b 975 to 1779 883 to 90   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 796/803
(99 %)
21 diff
(97.4 %id)
AW364302 denis_drash .b 982 to 1554 1 to 573       573/573
(100 %)
5 diff
(99.2 %id)
CR978064 T-Lymphocytes .b 993 to 1660 1 to 668       668/669
(99 %)
1 diff
(99.9 %id)
BF829087 head_normal .b 997 to 1553 565 to 1     Submitted on the opposite strand 535/565
(94 %)
31 diff
(94.6 %id)
CV338941 breast .b 997 to 1468 473 to 2     Submitted on the opposite strand 471/473
(99 %)
3 diff
(99.4 %id)
AW380206 head_neck .b 1010 to 1412 427 to 24       404/427
(94 %)
1 diff
(99.8 %id)
BG420296 Kidney, renal cell adenocarcinoma .b 1013 to 1755 7 to 748   AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 742/749
(99 %)
7 diff
(99.1 %id)
BQ227876 epithelioid carcinoma, Pancreas .b 1013 to 1781 806 to 32     Submitted on the opposite strand 775/939
(82 %)
32 diff
(96.6 %id)
TI_154136356   .b 1015 to 1781 858 to 90       722/909
(79 %)
25 diff
(97.3 %id)
BM992515 lung, Metastatic Chondrosarcoma .b 1018 to 1768 742 to 1       742/744
(99 %)
10 diff
(98.7 %id)
TI_154052727   .b 1018 to 1779 835 to 78   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 758/945
(80 %)
13 diff
(98.7 %id)
F08039 brain, total brain .b 1029 to 1341 7 to 318       312/318
(98 %)
6 diff
(98.2 %id)
BQ927159 carcinoma, cell line, Prostate .b 1038 to 1750 1 to 713   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 713/713
(100 %)
0 diff
(100 %id)
AW385691 leiomios .b 1063 to 1678 629 to 13       617/640
(96 %)
0 diff
(100 %id)
BM989102 Bone, Subchondral Bone .b 1063 to 1777 709 to 1       709/713
(99 %)
7 diff
(99.1 %id)
CV571620 cornea, eye .b 1068 to 1642 1 to 575       575/575
(100 %)
0 diff
(100 %id)
BG282479 adenocarcinoma, cell line, Prostate .b 1069 to 1469 1 to 401   AAA   401/401
(100 %)
0 diff
(100 %id)
AW821012 stomach .b 1071 to 1461 392 to 1       392/392
(100 %)
14 diff
(96.5 %id)
BF375719 stomach .b 1071 to 1303 233 to 1       233/233
(100 %)
7 diff
(97.0 %id)
BM809651 amelanotic melanoma, cell line, skin .b 1071 to 1769 1 to 699       699/701
(99 %)
3 diff
(99.6 %id)
BF734389 amnion_normal .b 1072 to 1308 236 to 1     Submitted on the opposite strand 236/237
(99 %)
7 diff
(97.1 %id)
CD367826 Alveolar Macrophage, lung .b 1075 to 1771 712 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 694/694
(100 %)
3 diff
(99.6 %id)
BM992518 lung, Metastatic Chondrosarcoma .b 1080 to 1768 689 to 1       689/689
(100 %)
2 diff
(99.8 %id)
AI936021 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1081 to 1764 682 to 1       682/682
(100 %)
7 diff
(99.0 %id)
CA428125 Bone, Subchondral Bone .b 1081 to 1777 693 to 1       693/693
(100 %)
6 diff
(99.2 %id)
CF596509 Stomach, adenocarcinoma .b 1084 to 1488 1 to 408       408/1019
(40 %)
12 diff
(98.9 %id)
CA417368 Chondrosarcoma Cell line .b 1084 to 1768 685 to 1       685/685
(100 %)
1 diff
(99.9 %id)
BQ016582 lung, Lung Focal Fibrosis .b 1086 to 1768 681 to 1       681/681
(100 %)
3 diff
(99.6 %id)
BM990823 lung, Lung Focal Fibrosis .b 1087 to 1769 702 to 21   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 682/684
(99 %)
2 diff
(99.8 %id)
BF768111 colon_normal .b 1088 to 1403 322 to 5     Submitted on the opposite strand 318/322
(98 %)
1 diff
(99.7 %id)
AA350145 brain .b 1091 to 1469 379 to 1       379/379
(100 %)
0 diff
(100 %id)
BF375763 stomach .b 1112 to 1495 393 to 9       385/393
(97 %)
0 diff
(100 %id)
BF375777 stomach .b 1112 to 1495 393 to 9       385/393
(97 %)
0 diff
(100 %id)
AW938091 denis_drash .b 1118 to 1472 1 to 358       358/358
(100 %)
11 diff
(97.0 %id)
AI676224 adenocarcinoma, Pancreas .b 1127 to 1762 635 to 2       634/646
(98 %)
4 diff
(99.4 %id)
AI818330 adenocarcinoma, Pancreas .b 1127 to 1781 659 to 5       655/685
(95 %)
2 diff
(99.8 %id)
BG403212 bladder, transitional cell papilloma, cell line .b 1130 to 1777 1 to 648   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 648/649
(99 %)
4 diff
(99.4 %id)
AA195870 muscle, skeletal muscle .b 1133 to 1764 633 to 1   fully sequenced,   633/633
(100 %)
2 diff
(99.7 %id)
BG025728 lymph, lymphoma, cell line .b 1138 to 1645 1 to 508       508/508
(100 %)
0 diff
(100 %id)
BU615957 Bone, Subchondral Bone .b 1138 to 1764 637 to 11   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 627/627
(100 %)
0 diff
(100 %id)
CA441723 Chondrosarcoma, Left Pubic Bone .b 1157 to 1781 626 to 2       625/626
(99 %)
0 diff
(100 %id)
BU169258 epidermoid carcinoma, cell line, salivary gland .b 1165 to 1750 1 to 586   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 586/586
(100 %)
0 diff
(100 %id)
BM992641 lung, Metastatic Chondrosarcoma .b 1185 to 1768 584 to 1       584/584
(100 %)
1 diff
(99.9 %id)
CV574476 cornea, eye .b 1186 to 1764 615 to 37   AAA Submitted on the opposite strand 579/586
(98 %)
0 diff
(100 %id)
F01809 brain, total brain .b 1210 to 1469 260 to 1       260/260
(100 %)
0 diff
(100 %id)
BF088464 head_neck .b 1214 to 1644 435 to 7       429/435
(98 %)
0 diff
(100 %id)
BF828379 head_normal .b 1223 to 1453 231 to 1     Submitted on the opposite strand 231/231
(100 %)
0 diff
(100 %id)
BG978846 colon_normal .b 1255 to 1609 366 to 14       353/369
(95 %)
0 diff
(100 %id)
AW797057 uterus .b 1257 to 1415 167 to 10       158/189
(83 %)
0 diff
(100 %id)
BU073161 insulinoma, Pancreas .b 1351 to 1784 443 to 10   fully sequenced, Submitted on the opposite strand 434/443
(97 %)
8 diff
(98.2 %id)
AW380986 head_neck .b 1355 to 1523 172 to 3       170/191
(89 %)
0 diff
(100 %id)
AW380929 head_neck .b 1362 to 1523 161 to 3       159/187
(85 %)
0 diff
(100 %id)
BF873858 lung_tumor .b 1381 to 1507 128 to 1     Submitted on the opposite strand 128/128
(100 %)
0 diff
(100 %id)
AW580736 leiomios .b 1394 to 1643 251 to 1       251/251
(100 %)
4 diff
(98.5 %id)
BI003219 head_normal .b 1405 to 1551 164 to 20       145/164
(88 %)
0 diff
(100 %id)
BQ052237 blood, natural killer cells, cell line .b 1444 to 2459 1 to 1026       1026/1026
(100 %)
19 diff
(98.2 %id)
BM822513 stomach .b 1465 to 2025 1 to 561       561/561
(100 %)
0 diff
(100 %id)
AL567204 brain, fetal brain .b 1513 to 2585 1062 to 1   tiling clone,   1062/1119
(94 %)
17 diff
(98.5 %id)
BF846607 lung_normal .b 1540 to 2091 550 to 1     Submitted on the opposite strand 550/550
(100 %)
4 diff
(99.3 %id)
BF846594 lung_normal .b 1557 to 2091 540 to 8     Submitted on the opposite strand 533/540
(98 %)
0 diff
(100 %id)
BF846595 lung_normal .b 1573 to 2091 522 to 6     Submitted on the opposite strand 517/522
(99 %)
0 diff
(100 %id)
TI_154128817   .b 1607 to 2650 1117 to 86   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 1032/1038
(99 %)
46 diff
(95.6 %id)
AW151928 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 1617 to 2046 24 to 454     Submitted on the opposite strand 431/454
(94 %)
6 diff
(98.7 %id)
BF757854 colon .b 1640 to 1925 307 to 22     Submitted on the opposite strand 286/308
(92 %)
0 diff
(100 %id)
AW795957 uterus .b 1647 to 2005 378 to 22       357/378
(94 %)
0 diff
(100 %id)
AW864919 stomach_normal .b 1667 to 1935 269 to 1       269/269
(100 %)
5 diff
(98.2 %id)
TI_154022458   .b 1715 to 2650 1020 to 93   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 928/1157
(80 %)
24 diff
(98.0 %id)
TI_149271336   .b 1765 to 2647 959 to 89   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 871/991
(87 %)
20 diff
(98.0 %id)
BM686293 eye, eye anterior segment .b 1791 to 2270 9 to 488   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 480/488
(98 %)
0 diff
(100 %id)
BU674187 lung, Primary Lung Epithelial Cells .b 1794 to 2372 9 to 587   AAA Submitted on the opposite strand 579/587
(98 %)
6 diff
(99.0 %id)
BP424423 small intestine .b 1796 to 2299 1 to 505     Submitted on the opposite strand 505/505
(100 %)
1 diff
(99.9 %id)
BP425514 small intestine .b 1830 to 2363 1 to 534     Submitted on the opposite strand 534/534
(100 %)
2 diff
(99.7 %id)
TI_154135299   .b 1832 to 2650 877 to 73   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 805/973
(82 %)
16 diff
(98.4 %id)
BG939315 Bone, Hip .b 1850 to 2449 9 to 608       600/608
(98 %)
6 diff
(99.1 %id)
AA486173 lung .b 1867 to 2252 1 to 385   fully sequenced,   385/385
(100 %)
1 diff
(99.8 %id)
AA487307 lung .b 1872 to 2250 1 to 378   fully sequenced,   378/378
(100 %)
1 diff
(99.8 %id)
TI_149308497   .b 1881 to 2650 855 to 88   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 768/951
(80 %)
3 diff
(99.7 %id)
TI_154127689   .b 1888 to 2650 871 to 114   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 758/944
(80 %)
8 diff
(99.2 %id)
BX116808 eye, retina .b 1892 to 2650 1 to 759   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 759/759
(100 %)
0 diff
(100 %id)
BU617600 Bone, Subchondral Bone .b 1899 to 2647 762 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 744/746
(99 %)
5 diff
(99.4 %id)
BX454328 placenta .b 1901 to 2628 729 to 1       729/886
(82 %)
0 diff
(100 %id)
TI_149290512   .b 1912 to 2650 813 to 85   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 729/921
(79 %)
16 diff
(98.3 %id)
BQ000024 Fibrosarcoma .b 1915 to 2647 748 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 730/730
(100 %)
2 diff
(99.8 %id)
CA426067 Bone, Subchondral Bone .b 1919 to 2650 745 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 727/727
(100 %)
5 diff
(99.4 %id)
CA307300 Alveolar Macrophage, lung .b 1926 to 2650 741 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 723/723
(100 %)
3 diff
(99.6 %id)
EL953044 eyeball .b 1927 to 2516 1 to 590       590/590
(100 %)
2 diff
(99.7 %id)
TI_149276722   .b 1958 to 2650 765 to 87   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 679/702
(96 %)
21 diff
(97.1 %id)
TI_149293484   .b 1958 to 2650 798 to 109   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 690/908
(75 %)
9 diff
(99.1 %id)
BQ009416 Chondrosarcoma, Left Pubic Bone .b 1961 to 2650 705 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 687/695
(98 %)
2 diff
(99.8 %id)
TI_154024292   .b 1962 to 2661 786 to 88   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 699/702
(99 %)
1 diff
(99.9 %id)
AI904043 breast .b 1963 to 2501 539 to 1       539/539
(100 %)
6 diff
(98.9 %id)
TI_149313891   .b 1963 to 2650 771 to 85   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 687/995
(69 %)
1 diff
(99.9 %id)
CB305720 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1963 to 2650 705 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 687/692
(99 %)
1 diff
(99.9 %id)
H25059 breast .b 1965 to 2304 1 to 342     Submitted on the opposite strand 342/342
(100 %)
10 diff
(97.1 %id)
CD368526 Alveolar Macrophage, lung .b 1966 to 2650 701 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 683/683
(100 %)
3 diff
(99.6 %id)
AA428397 ovarian tumor, ovary .b 1968 to 2349 1 to 381       381/381
(100 %)
1 diff
(99.8 %id)
BE178665 head_neck .b 1973 to 2565 608 to 12     Submitted on the opposite strand 597/634
(94 %)
0 diff
(100 %id)
CA439575 lung, Lung Focal Fibrosis .b 1981 to 2661 699 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 681/681
(100 %)
0 diff
(100 %id)
BU616638 Bone, Subchondral Bone .b 1982 to 2650 687 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 669/669
(100 %)
0 diff
(100 %id)
TI_154046655   .b 1986 to 2650 748 to 84   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 665/990
(67 %)
0 diff
(100 %id)
CA412519 Chondrosarcoma Grade II, Left Pelvis .b 1986 to 2650 683 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 665/680
(97 %)
0 diff
(100 %id)
CA439069 lung, Lung Focal Fibrosis .b 1994 to 2650 675 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 657/657
(100 %)
0 diff
(100 %id)
CA308895 Alveolar Macrophage, lung .b 1994 to 2650 675 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 657/657
(100 %)
0 diff
(100 %id)
BF927905 nervous_tumor .b 2003 to 2368 370 to 1     Submitted on the opposite strand 370/370
(100 %)
22 diff
(94.1 %id)
BE813129 amnion_normal .b 2024 to 2336 325 to 12       314/331
(94 %)
0 diff
(100 %id)
BG939316 Bone, Hip .b 2028 to 2651 627 to 4       624/627
(99 %)
0 diff
(100 %id)
TI_151738261   .b 2029 to 2650 738 to 105   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 634/898
(70 %)
29 diff
(96.8 %id)
EL952047 eyeball .b 2032 to 2635 8 to 611       604/611
(98 %)
6 diff
(99.1 %id)
BM127454 Islets of Langerhans, Pancreas .b 2052 to 2597 1 to 546       546/546
(100 %)
0 diff
(100 %id)
AA032192 heart .b 2058 to 2595 1 to 542     Submitted on the opposite strand 542/545
(99 %)
20 diff
(96.4 %id)
BF898005 marrow .b 2064 to 2555 503 to 12     Submitted on the opposite strand 492/503
(97 %)
0 diff
(100 %id)
BM990261 lung, Metastatic Chondrosarcoma .b 2066 to 2650 603 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 585/585
(100 %)
0 diff
(100 %id)
CA425346 Bone, Subchondral Bone .b 2066 to 2647 600 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 582/582
(100 %)
0 diff
(100 %id)
BF338976 brain, glioblastoma with EGFR amplification .b 2071 to 2589 1 to 519       519/519
(100 %)
0 diff
(100 %id)
TI_151740194   .b 2076 to 2650 686 to 118   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 569/898
(63 %)
13 diff
(98.6 %id)
BM991437 lung, Metastatic Chondrosarcoma .b 2079 to 2661 601 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 583/583
(100 %)
0 diff
(100 %id)
BQ332253 lung_tumor .b 2088 to 2633 547 to 2       546/547
(99 %)
0 diff
(100 %id)
BF060925 follicular carcinoma, thyroid .b 2109 to 2485 1 to 377     Submitted on the opposite strand 377/383
(98 %)
5 diff
(98.7 %id)
CB121580 Liver .b 2112 to 2650 1 to 539   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 539/539
(100 %)
0 diff
(100 %id)
CK430301 eye, lacrimal gland .b 2114 to 2650 1 to 537   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 537/537
(100 %)
0 diff
(100 %id)
BQ672728 epidermoid carcinoma, cell line, salivary gland .b 2118 to 2650 1 to 533   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 533/533
(100 %)
0 diff
(100 %id)
TI_154138660   .b 2119 to 2628 593 to 84     Submitted on the opposite strand 510/510
(100 %)
0 diff
(100 %id)
BU157626 ductal carcinoma, cell line, Pancreas .b 2129 to 2650 1 to 522   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 522/522
(100 %)
0 diff
(100 %id)
BQ690219 ductal carcinoma, cell line, Pancreas .b 2129 to 2650 1 to 522   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 522/522
(100 %)
0 diff
(100 %id)
AA427364 ovarian tumor, ovary .b 2130 to 2315 1 to 189   fully sequenced,   189/189
(100 %)
0 diff
(100 %id)
BQ368413 placenta_normal .b 2134 to 2644 516 to 5       512/517
(99 %)
0 diff
(100 %id)
AW005334 anaplastic oligodendroglioma, brain .b 2138 to 2650 513 to 1       513/513
(100 %)
0 diff
(100 %id)
BG008346 placenta_normal .b 2139 to 2307 177 to 9       169/177
(95 %)
0 diff
(100 %id)
AW402316 lymph .b 2139 to 2628 497 to 8     Submitted on the opposite strand 490/497
(98 %)
0 diff
(100 %id)
BQ378131 uterus_tumor .b 2140 to 2384 272 to 26       247/274
(90 %)
0 diff
(100 %id)
CA435477 lung, Metastatic Chondrosarcoma .b 2140 to 2650 529 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 511/511
(100 %)
0 diff
(100 %id)
AI692818 adenocarcinoma, Pancreas .b 2141 to 2650 510 to 1       510/510
(100 %)
0 diff
(100 %id)
BP390865 pancreatic islet .b 2147 to 2650 1 to 504     Submitted on the opposite strand 504/504
(100 %)
0 diff
(100 %id)
AI093174 heart .b 2151 to 2650 500 to 1       500/500
(100 %)
0 diff
(100 %id)
AI685484 Prostate .b 2151 to 2650 500 to 1       500/500
(100 %)
0 diff
(100 %id)
BQ345712 nervous_tumor .b 2157 to 2535 378 to 1       378/378
(100 %)
3 diff
(99.3 %id)
DB575668 hypothalamus .b 2157 to 2650 1 to 494     Submitted on the opposite strand 494/494
(100 %)
1 diff
(99.8 %id)
DB576329 hypothalamus .b 2158 to 2650 1 to 493     Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
BQ320014 colon .b 2159 to 2542 385 to 4       382/385
(99 %)
0 diff
(100 %id)
BQ346165 nervous_tumor .b 2159 to 2444 299 to 16       284/299
(94 %)
0 diff
(100 %id)
DB576086 hypothalamus .b 2159 to 2650 1 to 492     Submitted on the opposite strand 492/492
(100 %)
1 diff
(99.8 %id)
CV373741 placenta_normal .b 2164 to 2579 418 to 12     Submitted on the opposite strand 407/418
(97 %)
0 diff
(100 %id)
T60158 lung .b 2169 to 2620 1 to 455     Submitted on the opposite strand 455/455
(100 %)
21 diff
(95.4 %id)
DB574879 hypothalamus .b 2172 to 2648 1 to 477     Submitted on the opposite strand 477/479
(99 %)
2 diff
(99.6 %id)
CU443076 epidermis .b 2173 to 2486 328 to 15     Submitted on the opposite strand 314/358
(87 %)
0 diff
(100 %id)
CU445300 epidermis .b 2173 to 2607 449 to 15     Submitted on the opposite strand 435/451
(96 %)
0 diff
(100 %id)
CU447480 epidermis .b 2173 to 2554 393 to 11     Submitted on the opposite strand 383/423
(90 %)
0 diff
(100 %id)
CU448025 epidermis .b 2173 to 2484 335 to 24     Submitted on the opposite strand 312/365
(85 %)
0 diff
(100 %id)
CU448660 epidermis .b 2173 to 2514 365 to 24     Submitted on the opposite strand 342/395
(86 %)
0 diff
(100 %id)
CU449261 epidermis .b 2173 to 2479 329 to 23     Submitted on the opposite strand 307/359
(85 %)
0 diff
(100 %id)
CU451221 epidermis .b 2173 to 2484 335 to 24     Submitted on the opposite strand 312/365
(85 %)
0 diff
(100 %id)
CU452704 epidermis .b 2173 to 2579 418 to 13     Submitted on the opposite strand 406/448
(90 %)
0 diff
(100 %id)
CU453507 epidermis .b 2173 to 2554 391 to 10     Submitted on the opposite strand 382/421
(90 %)
0 diff
(100 %id)
CU454648 epidermis .b 2173 to 2564 403 to 12     Submitted on the opposite strand 392/433
(90 %)
0 diff
(100 %id)
CU455864 epidermis .b 2173 to 2488 321 to 6     Submitted on the opposite strand 316/351
(90 %)
0 diff
(100 %id)
DB525020 testis .b 2174 to 2647 1 to 474     Submitted on the opposite strand 474/474
(100 %)
2 diff
(99.6 %id)
DB516835 testis .b 2175 to 2647 1 to 473     Submitted on the opposite strand 473/473
(100 %)
1 diff
(99.8 %id)
DB543328 hippocampus .b 2176 to 2648 1 to 473     Submitted on the opposite strand 473/475
(99 %)
1 diff
(99.8 %id)
AA491503 lung .b 2176 to 2372 1 to 196   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 196/196
(100 %)
0 diff
(100 %id)
DB539486 hippocampus .b 2181 to 2648 1 to 467     Submitted on the opposite strand 467/469
(99 %)
3 diff
(99.4 %id)
DB568404 hypothalamus .b 2184 to 2648 1 to 464     Submitted on the opposite strand 464/465
(99 %)
6 diff
(98.8 %id)
DB552379 hippocampus .b 2187 to 2650 1 to 464     Submitted on the opposite strand 464/464
(100 %)
2 diff
(99.6 %id)
DB539958 hippocampus .b 2201 to 2648 1 to 448     Submitted on the opposite strand 448/450
(99 %)
2 diff
(99.6 %id)
DB565663 hypothalamus .b 2201 to 2650 1 to 450     Submitted on the opposite strand 450/450
(100 %)
2 diff
(99.6 %id)
DB568408 hypothalamus .b 2202 to 2661 1 to 459     Submitted on the opposite strand 459/459
(100 %)
1 diff
(99.8 %id)
DB567420 hypothalamus .b 2203 to 2650 1 to 448     Submitted on the opposite strand 448/448
(100 %)
0 diff
(100 %id)
DB539766 hippocampus .b 2207 to 2648 1 to 442     Submitted on the opposite strand 442/444
(99 %)
1 diff
(99.8 %id)
DB553388 hypothalamus .b 2208 to 2648 1 to 440     Submitted on the opposite strand 440/442
(99 %)
5 diff
(98.9 %id)
DB535172 hippocampus .b 2211 to 2650 1 to 440     Submitted on the opposite strand 440/440
(100 %)
2 diff
(99.6 %id)
DB555010 hypothalamus .b 2212 to 2650 1 to 432     Submitted on the opposite strand 432/432
(100 %)
24 diff
(94.5 %id)
BP390853 pancreatic islet .b 2220 to 2650 1 to 431     Submitted on the opposite strand 431/431
(100 %)
0 diff
(100 %id)
AA782303 ovary .b 2221 to 2572 1 to 350     Submitted on the opposite strand 350/350
(100 %)
4 diff
(98.9 %id)
AA486110 lung .b 2222 to 2650 429 to 1   fully sequenced,   429/429
(100 %)
0 diff
(100 %id)
DB564278 hypothalamus .b 2223 to 2661 1 to 438     Submitted on the opposite strand 438/438
(100 %)
1 diff
(99.8 %id)
AA487156 lung .b 2227 to 2650 424 to 1   fully sequenced,   424/424
(100 %)
0 diff
(100 %id)
DB530607 hippocampus .b 2228 to 2650 1 to 419     Submitted on the opposite strand 419/419
(100 %)
5 diff
(98.9 %id)
DB546758 hippocampus .b 2228 to 2648 1 to 421     Submitted on the opposite strand 421/423
(99 %)
1 diff
(99.8 %id)
DB561038 hypothalamus .b 2238 to 2650 1 to 412     Submitted on the opposite strand 412/412
(100 %)
8 diff
(98.1 %id)
BM672696 eye, eye anterior segment .b 2240 to 2650 429 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 411/411
(100 %)
0 diff
(100 %id)
DB559557 hypothalamus .b 2241 to 2648 1 to 410     Submitted on the opposite strand 410/412
(99 %)
14 diff
(96.7 %id)
CN411431 embryonic stem cells, cell lines H1, H7, andH9 .b 2245 to 2476 232 to 1     Submitted on the opposite strand 232/232
(100 %)
3 diff
(98.8 %id)
DB532714 hippocampus .b 2247 to 2650 1 to 404     Submitted on the opposite strand 404/404
(100 %)
2 diff
(99.6 %id)
BQ337377 marrow .b 2255 to 2421 169 to 2       168/169
(99 %)
0 diff
(100 %id)
BP398335 pancreatic islet .b 2257 to 2650 1 to 396     Submitted on the opposite strand 396/396
(100 %)
2 diff
(99.5 %id)
BP393787 pancreatic islet .b 2257 to 2650 1 to 394     Submitted on the opposite strand 394/394
(100 %)
0 diff
(100 %id)
BP389757 pancreatic islet .b 2273 to 2643 1 to 371     Submitted on the opposite strand 371/375
(98 %)
1 diff
(99.8 %id)
AA430393 ovarian tumor, ovary .b 2285 to 2650 366 to 1   fully sequenced,   366/366
(100 %)
0 diff
(100 %id)
BP398519 pancreatic islet .b 2290 to 2650 1 to 361     Submitted on the opposite strand 361/361
(100 %)
4 diff
(98.9 %id)
BG992677 head_neck .b 2302 to 2475 176 to 1       176/177
(99 %)
0 diff
(100 %id)
AA557794 Prostate, prostatic intraepithelial neoplasia - highgrade .b 2310 to 2649 340 to 1       340/342
(99 %)
2 diff
(99.5 %id)
DB575220 hypothalamus .b 2321 to 2661 1 to 340     Submitted on the opposite strand 340/340
(100 %)
7 diff
(98.0 %id)
BP389653 pancreatic islet .b 2324 to 2651 1 to 328     Submitted on the opposite strand 328/333
(98 %)
1 diff
(99.7 %id)
BP384268 pancreatic islet .b 2327 to 2651 1 to 325     Submitted on the opposite strand 325/330
(98 %)
2 diff
(99.4 %id)
AA487559 lung .b 2342 to 2650 325 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 309/309
(100 %)
0 diff
(100 %id)
BF090951 ovary .b 2362 to 2598 247 to 12       236/260
(90 %)
0 diff
(100 %id)
BQ345559 nervous_tumor .b 2366 to 2555 191 to 5       187/191
(97 %)
0 diff
(100 %id)
AA515918 liposarcoma .b 2368 to 2651 313 to 30       284/313
(90 %)
0 diff
(100 %id)
BP418650 small intestine .b 2371 to 2651 1 to 281     Submitted on the opposite strand 281/284
(98 %)
1 diff
(99.7 %id)
AA555247 normal prostatic epithelial cells, Prostate .b 2373 to 2646 310 to 37       274/310
(88 %)
0 diff
(100 %id)
F04280 brain, total brain .b 2374 to 2646 273 to 1       273/273
(100 %)
0 diff
(100 %id)
BG938996 Bone, Hip .b 2381 to 2647 273 to 7       267/273
(97 %)
0 diff
(100 %id)
BE246811 leukopheresis .b 2385 to 2647 264 to 1       264/264
(100 %)
5 diff
(98.2 %id)
DN949401.
matches multiple genes
Pancreas, Purified pancreatic islet .b 2395 to 2651 272 to 16     Submitted on the opposite strand, also hits gene VPS53 257/272
(94 %)
0 diff
(100 %id)
AA742872   .b 2404 to 2662 260 to 2   tiling clone,   259/274
(94 %)
0 diff
(100 %id)
BE246566 leukopheresis .b 2427 to 2647 222 to 1       222/222
(100 %)
10 diff
(95.5 %id)
AA476306 ovarian tumor, ovary .b 2432 to 2657 1 to 223     Submitted on the opposite strand 223/230
(96 %)
5 diff
(97.9 %id)
BQ368774 placenta_normal .b 2435 to 2653 226 to 8       219/226
(96 %)
13 diff
(94.3 %id)
CU447053 epidermis .b 2438 to 2603 183 to 18     Submitted on the opposite strand 166/200
(83 %)
0 diff
(100 %id)
CU450075 epidermis .b 2438 to 2603 184 to 19     Submitted on the opposite strand 166/201
(82 %)
0 diff
(100 %id)
CU456361 epidermis .b 2438 to 2603 184 to 19     Submitted on the opposite strand 166/201
(82 %)
0 diff
(100 %id)
T25414   .b 2479 to 2651 178 to 8       171/186
(91 %)
0 diff
(100 %id)
AA425845 ovarian tumor, ovary .b 2502 to 2649 148 to 1       148/148
(100 %)
0 diff
(100 %id)
BQ369060 placenta_normal .b 2517 to 2620 107 to 5       103/107
(96 %)
0 diff
(100 %id)
AJ708266 heart .b 2531 to 2651 141 to 21     Submitted on the opposite strand 121/141
(85 %)
0 diff
(100 %id)
AA654881   .b 2558 to 2651 110 to 17       94/110
(85 %)
0 diff
(100 %id)
D19972   .b 2604 to 2651 1 to 48     Submitted on the opposite strand 48/50
(96 %)
1 diff
(98.0 %id)
BG260050 bladder, transitional cell papilloma, cell line .c 1 to 770 1 to 774 G133D H134T R135A T136Q D137I ... tiling clone,   772/889
(86 %)
16 diff
(98.3 %id)
BU509394 leiomyosarcoma, uterus .c 17 to 878 1 to 865       865/927
(93 %)
25 diff
(97.4 %id)
DR763709 embryonic stem .c 17 to 778 1 to 762   tiling clone,   762/762
(100 %)
1 diff
(99.9 %id)
AV730970 hypothalamus .c 656 to 1313 656 to 1   tiling clone, Submitted on the opposite strand 656/676
(97 %)
10 diff
(98.6 %id)
AV730652 hypothalamus .c 670 to 1313 660 to 15   tiling clone, Submitted on the opposite strand 646/698
(92 %)
0 diff
(100 %id)
AV732289 hypothalamus .c 838 to 1314 490 to 24     Submitted on the opposite strand 467/491
(95 %)
0 diff
(100 %id)
AV730607 hypothalamus .c 883 to 1313 424 to 1     Submitted on the opposite strand 424/429
(98 %)
3 diff
(99.4 %id)
AV730608 hypothalamus .c 889 to 1313 415 to 1     Submitted on the opposite strand 415/416
(99 %)
5 diff
(98.8 %id)
AV730483 hypothalamus .c 902 to 1314 433 to 30   tiling clone, Submitted on the opposite strand 404/433
(93 %)
0 diff
(100 %id)
AK316327 Spleen .d 1 to 941 1 to 941   tiling clone,   941/941
(100 %)
6 diff
(99.4 %id)
DC388950 Spleen .d 1 to 561 1 to 561       561/561
(100 %)
6 diff
(99.0 %id)
AK300906 small intestine .d 6 to 999 1 to 994 exact tiling clone,   994/994
(100 %)
0 diff
(100 %id)
DC358206 lung .d 6 to 577 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC388107 small intestine .d 6 to 572 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
DC419138 stomach, tumor tissue .d 6 to 561 1 to 557       557/565
(98 %)
3 diff
(99.5 %id)
BQ063518 lymph, lymphoma, cell line .d 17 to 911 1 to 905       905/1091
(82 %)
22 diff
(98.0 %id)
CR988493 T-Lymphocytes .d 28 to 831 1 to 807       807/809
(99 %)
4 diff
(99.6 %id)
BQ440456 leiomyosarcoma, uterus .d 30 to 891 1 to 865       865/868
(99 %)
7 diff
(99.2 %id)
CR997256 T-Lymphocytes .d 40 to 885 1 to 850       850/854
(99 %)
5 diff
(99.5 %id)
TI_154186043   .d 71 to 772 122 to 823       702/994
(70 %)
28 diff
(97.2 %id)
TI_154186111   .d 71 to 814 123 to 863       741/975
(76 %)
23 diff
(97.7 %id)
BG722047 testis .e-u 1 to 532 3 to 533 S142P tiling clone,   533/533
(100 %)
6 diff
(98.9 %id)
DC317045 amygdala .e-u 1 to 479 1 to 480   tiling clone,   480/481
(99 %)
2 diff
(99.6 %id)
DA932192 Spleen .e-u 4 to 553 2 to 551 S142P capped   550/550
(100 %)
1 diff
(99.9 %id)
DA936941 Spleen .e-u 5 to 560 2 to 557 S142P capped   556/556
(100 %)
1 diff
(99.9 %id)
DC322315 brain .e-u 7 to 477 1 to 471       471/471
(100 %)
2 diff
(99.6 %id)
DA590020 lung .e-u 8 to 571 2 to 565 S142P capped   564/564
(100 %)
1 diff
(99.9 %id)
DA674253   .e-u 8 to 528 2 to 522 S142P capped   521/521
(100 %)
1 diff
(99.9 %id)
DA674351   .e-u 8 to 600 2 to 595 R44L R45K T46D R47S A49S ... capped   594/594
(100 %)
2 diff
(99.7 %id)
DA677487   .e-u 8 to 604 2 to 602 E23* tiling clone, capped   601/601
(100 %)
5 diff
(99.2 %id)
DA945752 Spleen .e-u 8 to 579 2 to 584 E23* capped   583/583
(100 %)
13 diff
(97.8 %id)
DB156583 thymus .e-u 8 to 572 2 to 566 S142P capped   565/565
(100 %)
1 diff
(99.9 %id)
CA406246 adipose .e-u 38 to 414 1 to 377       377/377
(100 %)
0 diff
(100 %id)
DA988767 synovial membrane tissue from rheumatioidarthritis .f 1 to 529 2 to 530 G86D S115P tiling clone, capped   529/529
(100 %)
2 diff
(99.7 %id)
BI598925 brain, hypothalamus .f 27 to 759 1 to 735       735/742
(99 %)
17 diff
(97.8 %id)
DB506104 hypothalamus .f 32 to 437 1 to 406       406/409
(99 %)
8 diff
(98.1 %id)
DB157890 thymus .f 33 to 605 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DB272054 uterus .f 33 to 555 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
BP211808 cerebrum .f 34 to 620 1 to 587       587/589
(99 %)
8 diff
(98.7 %id)
DA584633 lung .f 34 to 612 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
TI_45213229   .f 34 to 759 137 to 864       728/871
(83 %)
18 diff
(98.0 %id)
DA862625 placenta .f 34 to 529 2 to 497   capped   496/496
(100 %)
3 diff
(99.4 %id)
DA919232 small intestine .f 34 to 595 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA961647 Spleen .f 34 to 580 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB007949 cervix, tumor tissue .f 34 to 586 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB139999 thymus .f 34 to 512 2 to 480   capped   479/479
(100 %)
1 diff
(99.8 %id)
DA678020   .f 35 to 620 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA932739 Spleen .f 35 to 575 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DB144732 thymus .f 35 to 578 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA940002 Spleen .f 36 to 631 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA316404 hippocampus .f 37 to 593 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA380558 thalamus .f 37 to 595 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA585453 lung .f 37 to 592 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA587747 lung .f 37 to 512 2 to 478   capped   477/477
(100 %)
2 diff
(99.6 %id)
DA590221 lung .f 37 to 605 2 to 572   capped   571/571
(100 %)
5 diff
(99.2 %id)
DA594304 lung .f 37 to 606 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA594810 lung .f 37 to 605 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA594876 lung .f 37 to 544 2 to 510   capped   509/509
(100 %)
2 diff
(99.7 %id)
DA626870 Kidney .f 37 to 596 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA916132 small intestine .f 37 to 552 2 to 519   capped   518/518
(100 %)
3 diff
(99.5 %id)
DA916795 small intestine .f 37 to 593 2 to 558   capped   557/560
(99 %)
2 diff
(99.7 %id)
DA933572 Spleen .f 37 to 559 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DA971666 synovial membrane tissue from rheumatioidarthritis .f 37 to 556 2 to 521   capped   520/520
(100 %)
1 diff
(99.9 %id)
DA974456 synovial membrane tissue from rheumatioidarthritis .f 37 to 542 2 to 507   capped   506/509
(99 %)
2 diff
(99.7 %id)
DB115478 thymus .f 37 to 588 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DB121947 thymus .f 37 to 576 2 to 542   capped   541/541
(100 %)
3 diff
(99.5 %id)
DB125751 thymus .f 37 to 588 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DB127935 thymus .f 37 to 581 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
CR979582 T-Lymphocytes .f 52 to 693 1 to 642       642/642
(100 %)
0 diff
(100 %id)
CR988440 T-Lymphocytes .f 58 to 932 1 to 874   tiling clone,   874/874
(100 %)
3 diff
(99.7 %id)
CR982340 T-Lymphocytes .f 64 to 501 1 to 438       438/449
(97 %)
2 diff
(99.6 %id)
AL602502 human skeletal muscle .f 406 to 927 1 to 522   tiling clone,   522/522
(100 %)
1 diff
(99.9 %id)
DB500877 hypothalamus .g 1 to 427 1 to 429 Y24H L33I P42R A76X G83R ...   Submitted on the opposite strand 429/436
(98 %)
20 diff
(95.5 %id)
DB503215 hypothalamus .g 1 to 484 1 to 484 S106P tiling clone, Submitted on the opposite strand 484/485
(99 %)
3 diff
(99.4 %id)
DB572058 hypothalamus .g 785 to 1249 1 to 465   tiling clone, Submitted on the opposite strand 465/465
(100 %)
13 diff
(97.3 %id)
DB574445 hypothalamus .g 805 to 1249 1 to 445   tiling clone, Submitted on the opposite strand 445/445
(100 %)
4 diff
(99.2 %id)
BI025623 marrow .h-u 1 to 354 15 to 367 D8A T9R A10R A11L Q12R ... tiling clone,   353/367
(96 %)
6 diff
(98.4 %id)
DA673874   .h-u 114 to 685 2 to 573   tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
BG950406 colon .h-u 137 to 541 419 to 7       413/419
(98 %)
0 diff
(100 %id)
AW301507 invasive adenocarcinoma, lung .i 1 to 478 48 to 525 L2D R29M tiling clone, Submitted on the opposite strand 478/529
(90 %)
10 diff
(98.2 %id)
BG028524 Bone, osteosarcoma, cell line .i 87 to 858 1 to 762   tiling clone,   762/863
(88 %)
19 diff
(97.8 %id)
M64256.
matches multiple genes
blood .j 1 to 146 1 to 146 E8X V25L S30G Y36C K38Q ... tiling clone, also hits gene HLA-G, HLA_ 146/147
(99 %)
11 diff
(92.6 %id)
CR979879 T-Lymphocytes .k 453 to 574 495 to 616   tiling clone,   527/617
(85 %)
17 diff
(97.3 %id)
CT004159 T-Lymphocytes .k 543 to 1231 1 to 697   tiling clone,   697/699
(99 %)
10 diff
(98.6 %id)
AA292233 ovarian tumor, ovary .k 779 to 999 1 to 225       220/225
(97 %)
3 diff
(98.7 %id)
BQ329667 lung_normal .k 812 to 1203 397 to 8       390/397
(98 %)
0 diff
(100 %id)
BQ329668 lung_normal .k 812 to 1203 395 to 6       390/395
(98 %)
0 diff
(100 %id)
BQ329680 lung_normal .k 812 to 1203 391 to 1       391/391
(100 %)
2 diff
(99.5 %id)
T90036 lung .k 827 to 1162 31 to 376     Submitted on the opposite strand 346/466
(74 %)
13 diff
(97.3 %id)
AW983669 head_normal .k 831 to 1079 248 to 1     Submitted on the opposite strand 248/258
(96 %)
5 diff
(98.1 %id)
BE810259 head_normal .k 831 to 1095 264 to 1       264/274
(96 %)
7 diff
(97.5 %id)
BF093761 uterus .k 831 to 1090 277 to 16       262/287
(91 %)
0 diff
(100 %id)
BQ345870 nervous_tumor .k 850 to 1034 184 to 2       183/184
(99 %)
0 diff
(100 %id)
BE937758 testis_normal .k 862 to 968 108 to 2       107/121
(88 %)
0 diff
(100 %id)
BF910359 uterus_tumor .k 863 to 985 132 to 10     Submitted on the opposite strand 123/132
(93 %)
0 diff
(100 %id)
AW945306 lung_normal .k 878 to 1114 14 to 260       247/276
(89 %)
6 diff
(97.9 %id)
AW945309 lung_normal .k 878 to 1130 257 to 3     Submitted on the opposite strand 255/258
(98 %)
0 diff
(100 %id)
BE825368 lung_normal .k 878 to 1095 222 to 5       218/223
(97 %)
0 diff
(100 %id)
BE825420 lung_normal .k 878 to 1120 256 to 21       236/257
(91 %)
0 diff
(100 %id)
AW891505 nervous_tumor .k 884 to 1116 233 to 1       233/233
(100 %)
0 diff
(100 %id)
BE764847 nervous_tumor .k 884 to 1120 243 to 7       237/243
(97 %)
0 diff
(100 %id)
BE825575 lung_normal .k 884 to 1124 243 to 4       240/253
(94 %)
0 diff
(100 %id)
CV372429 lung_normal .k 884 to 1040 19 to 179       161/179
(89 %)
6 diff
(96.7 %id)
AW891495 nervous_tumor .k 890 to 1126 240 to 6       235/240
(97 %)
0 diff
(100 %id)
BE764840 nervous_tumor .k 890 to 1130 244 to 5       240/244
(98 %)
0 diff
(100 %id)
BE825475 lung_normal .k 905 to 1176 277 to 6       272/277
(98 %)
0 diff
(100 %id)
BE825505 lung_normal .k 905 to 1131 229 to 5       225/229
(98 %)
0 diff
(100 %id)
BE825510 lung_normal .k 905 to 1174 291 to 22       270/291
(92 %)
0 diff
(100 %id)
BE825562 lung_normal .k 918 to 1126 1 to 206       206/207
(99 %)
8 diff
(96.2 %id)
BE825563 lung_normal .k 918 to 1116 1 to 199       199/199
(100 %)
6 diff
(97.0 %id)
BE825425 lung_normal .k 927 to 1120 216 to 23       194/225
(86 %)
0 diff
(100 %id)
BE825541 lung_normal .k 927 to 1120 202 to 7       196/244
(80 %)
0 diff
(100 %id)
BE825549 lung_normal .k 927 to 1131 207 to 4       204/216
(94 %)
0 diff
(100 %id)
BE825568 lung_normal .k 927 to 1116 190 to 1       190/202
(94 %)
0 diff
(100 %id)
AW891498 nervous_tumor .k 928 to 1131 204 to 2       203/204
(99 %)
0 diff
(100 %id)
AW891504 nervous_tumor .k 928 to 1131 202 to 2       201/202
(99 %)
0 diff
(100 %id)
AW945304 lung_normal .k 928 to 1102 182 to 5     Submitted on the opposite strand 178/182
(97 %)
0 diff
(100 %id)
AW945361 lung_normal .k 928 to 1120 202 to 10     Submitted on the opposite strand 193/202
(95 %)
0 diff
(100 %id)
AW945362 lung_normal .k 928 to 1105 181 to 4     Submitted on the opposite strand 178/181
(98 %)
0 diff
(100 %id)
AW948791 prostate_tumor .k 928 to 1131 206 to 6     Submitted on the opposite strand 201/206
(97 %)
0 diff
(100 %id)
BE764842 nervous_tumor .k 928 to 1120 200 to 8       193/200
(96 %)
0 diff
(100 %id)
BE764846 nervous_tumor .k 928 to 1120 201 to 8       194/201
(96 %)
0 diff
(100 %id)
BE764869 nervous_tumor .k 928 to 1116 187 to 1       187/187
(100 %)
4 diff
(97.9 %id)
BE764870 nervous_tumor .k 928 to 1119 191 to 1       191/191
(100 %)
2 diff
(99.0 %id)
BE825417 lung_normal .k 928 to 1124 199 to 4       196/199
(98 %)
0 diff
(100 %id)
BE825427 lung_normal .k 928 to 1130 202 to 1       202/221
(91 %)
4 diff
(98.2 %id)
BE825439 lung_normal .k 928 to 1120 207 to 15       193/207
(93 %)
0 diff
(100 %id)
BE825476 lung_normal .k 928 to 1120 207 to 15       193/207
(93 %)
0 diff
(100 %id)
BE825507 lung_normal .k 928 to 1119 213 to 22       192/213
(90 %)
0 diff
(100 %id)
BE825547 lung_normal .k 928 to 1120 200 to 6       195/200
(97 %)
0 diff
(100 %id)
BE825550 lung_normal .k 928 to 1120 205 to 14       192/205
(93 %)
0 diff
(100 %id)
BE825571 lung_normal .k 928 to 1176 254 to 6       249/254
(98 %)
0 diff
(100 %id)
BE825573 lung_normal .k 928 to 1116 189 to 1       189/189
(100 %)
0 diff
(100 %id)
BE929083 placenta_normal .k 928 to 1120 201 to 10       192/201
(95 %)
0 diff
(100 %id)
BQ371083 prostate_normal .k 928 to 1119 197 to 6       192/197
(97 %)
0 diff
(100 %id)
AW891506 nervous_tumor .k 931 to 1131 198 to 2       197/198
(99 %)
0 diff
(100 %id)
BE764848 nervous_tumor .k 931 to 1126 209 to 14       196/209
(93 %)
0 diff
(100 %id)
BF923317 nervous_tumor .k 932 to 1293 368 to 8     Submitted on the opposite strand 361/368
(98 %)
0 diff
(100 %id)
BE825564 lung_normal .k 935 to 1124 193 to 4       190/193
(98 %)
0 diff
(100 %id)
BE825363 lung_normal .k 938 to 1120 193 to 9       185/200
(92 %)
0 diff
(100 %id)
BE825454 lung_normal .k 956 to 1120 185 to 17       169/186
(90 %)
0 diff
(100 %id)
BE825357 lung_normal .k 961 to 1120 180 to 21       160/180
(88 %)
0 diff
(100 %id)
BE825452 lung_normal .k 974 to 1117 149 to 4       146/149
(97 %)
0 diff
(100 %id)
BE064277 breast .k 1126 to 1282 166 to 12   tiling clone, Submitted on the opposite strand 155/169
(91 %)
0 diff
(100 %id)
AI300756 2 pooled tumors (clear cell type), Kidney .k 1185 to 1550 369 to 4 exact tiling clone,   366/369
(99 %)
0 diff
(100 %id)
BE162794 head_neck .k 1231 to 1400 180 to 11     Submitted on the opposite strand 170/181
(93 %)
0 diff
(100 %id)
AW236295 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .k 1383 to 1535 153 to 1       153/153
(100 %)
0 diff
(100 %id)
AA421618 ovarian tumor, ovary .k 1384 to 1549 181 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 166/166
(100 %)
0 diff
(100 %id)
AA443611 ovarian tumor, ovary .k 1384 to 1549 166 to 1       166/166
(100 %)
0 diff
(100 %id)
AA909748 carcinoid, lung .k 1384 to 1549 166 to 1       166/166
(100 %)
0 diff
(100 %id)
BI024952 marrow .k 1395 to 1827 1 to 434       434/434
(100 %)
10 diff
(97.7 %id)
BI020421 marrow .k 1399 to 1847 1 to 448       448/448
(100 %)
6 diff
(98.7 %id)
BI020275 marrow .k 1400 to 1830 1 to 429       429/429
(100 %)
7 diff
(98.4 %id)
BI020432 marrow .k 1404 to 1678 8 to 279       272/279
(97 %)
6 diff
(97.9 %id)
BI020431 marrow .k 1405 to 1840 19 to 453       435/453
(96 %)
6 diff
(98.7 %id)
BI025550 marrow .k 1410 to 1678 272 to 2       271/272
(99 %)
0 diff
(100 %id)
BI025544 marrow .k 1411 to 1751 1 to 342       342/342
(100 %)
11 diff
(96.8 %id)
BQ334944 marrow .k 1417 to 1836 423 to 4   tiling clone,   420/423
(99 %)
8 diff
(98.2 %id)
BI020433 marrow .k 1433 to 1885 454 to 3   tiling clone,   452/454
(99 %)
0 diff
(100 %id)
GD146356   .k 1455 to 1560 1 to 106       106/119
(89 %)
6 diff
(95.0 %id)
BI021913 marrow .k 1543 to 1894 376 to 23   tiling clone,   354/376
(94 %)
11 diff
(97.1 %id)
BI025562 marrow .k 1546 to 1894 362 to 13   tiling clone,   350/362
(96 %)
8 diff
(97.8 %id)
BI020287 marrow .k 1601 to 1876 278 to 1       278/278
(100 %)
3 diff
(99.0 %id)
BF093810 uterus .l-u 1 to 421 1 to 424   tiling clone,   424/424
(100 %)
6 diff
(98.6 %id)
BU630987 cell lines, Chondrosarcoma .l-u 276 to 933 682 to 26 exact AAA   657/664
(98 %)
0 diff
(100 %id)
BU678416 lung .l-u 315 to 937 623 to 1 exact     623/623
(100 %)
6 diff
(99.1 %id)
AI859968 serous papillary carcinoma, high grade, 2pooled tumors, uterus .l-u 373 to 933 562 to 2 exact tiling clone,   561/562
(99 %)
0 diff
(100 %id)
AW969993   .l-u 394 to 947 644 to 90 W7G L44M   Submitted on the opposite strand 555/654
(84 %)
0 diff
(100 %id)
BG679077 skin, squamous cell carcinoma .l-u 424 to 1226 1 to 803 exact tiling clone,   803/803
(100 %)
0 diff
(100 %id)
CD107990 brain, Pituitary .l-u 429 to 1267 1 to 845 exact tiling clone,   845/856
(98 %)
7 diff
(99.2 %id)
TI_59382862   .l-u 435 to 1191 69 to 829 K56T     761/761
(100 %)
6 diff
(99.3 %id)
DB576904 hypothalamus .l-u 446 to 933 1 to 488 P40H   Submitted on the opposite strand 488/488
(100 %)
2 diff
(99.6 %id)
DB570522 hypothalamus .l-u 461 to 933 1 to 473     Submitted on the opposite strand 473/473
(100 %)
2 diff
(99.6 %id)
BQ017576 lung, Lung Focal Fibrosis .l-u 481 to 919 9 to 447   AAA Submitted on the opposite strand 439/447
(98 %)
6 diff
(98.7 %id)
BM999634 lung, Lung Focal Fibrosis .l-u 481 to 939 9 to 467   AAA Submitted on the opposite strand 459/475
(96 %)
6 diff
(98.8 %id)
AW795516 uterus .l-u 508 to 914 409 to 4       406/409
(99 %)
0 diff
(100 %id)
AW795532 uterus .l-u 508 to 902 406 to 12       395/406
(97 %)
0 diff
(100 %id)
AA573694   .l-u 513 to 939 430 to 4       427/430
(99 %)
0 diff
(100 %id)
BP392468 pancreatic islet .l-u 544 to 933 1 to 390     Submitted on the opposite strand 390/390
(100 %)
1 diff
(99.8 %id)
C06067   .l-u 567 to 947 382 to 1       382/386
(98 %)
10 diff
(97.5 %id)
AI750811 Bone, Hip .l-u 574 to 935 370 to 8       363/370
(98 %)
0 diff
(100 %id)
BP391928 pancreatic islet .m 1 to 500 1 to 500 exact tiling clone, Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
BU617364 Bone, Subchondral Bone .m 3 to 675 11 to 683   tiling clone, Submitted on the opposite strand 673/673
(100 %)
1 diff
(99.9 %id)
BF847891 lung_normal .n 1 to 341 6 to 345 S2R A3R R5G E6S R7V ... tiling clone,   345/345
(100 %)
9 diff
(97.4 %id)
AW975337   Gene HLA-E, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV645539 corresponding non cancerous liver tissue Gene HLA-E, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV654812 corresponding non cancerous liver tissue Gene HLA-E, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
CX755686 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass Gene HLA-E, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
TI_149278433   Gene HLA-E, variant not shown       AAA      
TI_149296529   Gene HLA-E, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand    
BM969097 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene HLA-E, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand    
189 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h-u, .i, .j, .k, .l-u, .m, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI