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Gene HIF3ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
216 supporting clones for gene HIF3A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR001068 fetal brain .a 1 to 665 12 to 678       670/678
(98 %)
9 diff
(98.7 %id)
DB176660 kidney, tumor tissue .a 1 to 543 4 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
CF994395 Human Placenta, placenta .a 1 to 750 29 to 785   tiling clone,   758/804
(94 %)
14 diff
(98.3 %id)
NM_152795.2   .a 1 to 5849 2 to 5850 exact RefSeq,   5850/5850
(100 %)
0 diff
(100 %id)
CB990114 Human Placenta, placenta .a 1 to 731 20 to 751       732/751
(97 %)
12 diff
(98.5 %id)
BG699633 brain, hippocampus .a 3 to 766 1 to 764       764/767
(99 %)
30 diff
(96.1 %id)
BC080551 Pancreas, ductal carcinoma .a 27 to 2325 1 to 2299 Q343R tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 2299/2299
(100 %)
3 diff
(99.9 %id)
EL736454 mixed .a 29 to 688 1 to 660       660/660
(100 %)
0 diff
(100 %id)
BQ684757 ductal carcinoma, cell line, Pancreas .a 30 to 950 1 to 927       927/938
(98 %)
12 diff
(98.8 %id)
AF079154   .a 47 to 391 1 to 345       345/345
(100 %)
0 diff
(100 %id)
DA844711 placenta .a 192 to 615 2 to 428   capped   427/427
(100 %)
5 diff
(98.9 %id)
BF365142 nervous_normal .a 343 to 942 23 to 620       598/620
(96 %)
4 diff
(99.4 %id)
BQ367243 placenta_normal .a 349 to 819 24 to 495       472/495
(95 %)
5 diff
(99.0 %id)
BX369170 Placenta Cot 25-normalized .a 673 to 1615 1 to 936   tiling clone,   936/943
(99 %)
19 diff
(98.0 %id)
BE250295 muscle, rhabdomyosarcoma .a 815 to 1358 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
BF958277 nervous_normal .a 916 to 1435 530 to 8       523/530
(98 %)
10 diff
(98.2 %id)
AL569107 placenta .a 1077 to 1857 945 to 172       773/964
(80 %)
29 diff
(97.0 %id)
AA359276 lung .a 1105 to 1413 1 to 309       309/309
(100 %)
0 diff
(100 %id)
BX464816 placenta .a 1210 to 2037 864 to 31       708/842
(84 %)
51 diff
(94.0 %id)
BM722881 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1481 to 1914 1 to 434   fully sequenced, Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 434/434
(100 %)
0 diff
(100 %id)
BE250712 muscle, rhabdomyosarcoma .a 1533 to 2268 740 to 15       728/753
(96 %)
14 diff
(98.2 %id)
CR615892 Placenta Cot 25-normalized .a 1714 to 2516 1 to 803       803/803
(100 %)
0 diff
(100 %id)
BX334597 Placenta Cot 25-normalized .a 1714 to 2516 1 to 804   fully sequenced,   804/804
(100 %)
1 diff
(99.9 %id)
CB991913 placenta, pre-eclamptic placenta .a 1792 to 2330 26 to 575       550/965
(56 %)
26 diff
(97.4 %id)
AI610761 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1822 to 1916 95 to 1       95/95
(100 %)
0 diff
(100 %id)
BX334596 Placenta Cot 25-normalized .a 1828 to 2485 661 to 1   fully sequenced,   661/661
(100 %)
7 diff
(99.0 %id)
BU740557 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1884 to 2456 591 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 573/573
(100 %)
1 diff
(99.9 %id)
CN406955 embryonic stem cells, cell lines H1, H7, andH9 .a 1952 to 2391 1 to 439       439/439
(100 %)
6 diff
(98.7 %id)
BQ706970 Spleen .a 2200 to 2798 1 to 604   tiling clone,   604/1042
(57 %)
19 diff
(98.2 %id)
CV326858 uterus_tumor .a 2560 to 2901 354 to 11   tiling clone, Submitted on the opposite strand 344/355
(96 %)
0 diff
(100 %id)
BX473764   .a 2715 to 3247 1 to 534   tiling clone,   534/534
(100 %)
2 diff
(99.7 %id)
AA346560 heart .a 2746 to 3003 1 to 258       258/258
(100 %)
0 diff
(100 %id)
AW581679 pnet .a 2984 to 3548 565 to 1       565/565
(100 %)
0 diff
(100 %id)
AK021881 whole embryo, mainly head .a 3121 to 4819 1 to 1701   tiling clone, available from FLJ,   1701/1701
(100 %)
5 diff
(99.8 %id)
AU119698 whole embryo, mainly head .a 3122 to 3905 2 to 786   capped   785/785
(100 %)
11 diff
(98.6 %id)
CB990803 placenta, pre-eclamptic placenta .a 3124 to 3799 24 to 708       685/840
(81 %)
0 diff
(100 %id)
AA993264   .a 3134 to 3596 468 to 7       462/468
(98 %)
0 diff
(100 %id)
AA991677   .a 3136 to 3596 467 to 7       461/467
(98 %)
0 diff
(100 %id)
DA542357 lung .a 3229 to 3806 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
AU119446 whole embryo, mainly head .a 3235 to 4058 2 to 824   tiling clone, capped   823/823
(100 %)
5 diff
(99.4 %id)
AW898165 nervous_normal .a 3352 to 3488 144 to 6       139/144
(96 %)
0 diff
(100 %id)
DA945386 Spleen .a 3613 to 4172 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
AI065030 Liver .a 3693 to 4281 590 to 1       590/590
(100 %)
3 diff
(99.5 %id)
AA429817   .a 3936 to 4332 1 to 397       397/397
(100 %)
2 diff
(99.5 %id)
DA278217 corpus callosum .a 3980 to 4478 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DB271058 uterus .a 4051 to 4510 2 to 461   capped   460/460
(100 %)
2 diff
(99.6 %id)
TI_149278218   .a 4144 to 4819 773 to 99   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 675/675
(100 %)
3 diff
(99.6 %id)
BQ416614.
matches multiple genes
Pancreas, Purified pancreatic islet .a 4221 to 4818 598 to 1     Submitted on the opposite strand, also hits gene SDR39U1 598/598
(100 %)
0 diff
(100 %id)
AU145974 whole embryo, mainly head .a 4247 to 4819 570 to 1       570/578
(98 %)
10 diff
(98.3 %id)
BU678311 lung .a 4282 to 4819 556 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 538/538
(100 %)
0 diff
(100 %id)
AU145787 whole embryo, mainly head .a 4293 to 4819 524 to 1       524/531
(98 %)
16 diff
(97.0 %id)
C16964   .a 4308 to 4710 1 to 403       403/403
(100 %)
2 diff
(99.6 %id)
BF999192 placenta_normal .a 4324 to 4598 1 to 275       275/278
(98 %)
4 diff
(98.6 %id)
AW903017 nervous_normal .a 4376 to 4531 154 to 1       154/154
(100 %)
2 diff
(98.8 %id)
DA541857 lung .a 4439 to 5009 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
AA346559 heart .a 4490 to 4819 340 to 1       340/344
(98 %)
13 diff
(96.3 %id)
BM725798 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4519 to 4819 1 to 301   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 301/301
(100 %)
0 diff
(100 %id)
BM929523 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4519 to 4819 1 to 301   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 301/301
(100 %)
0 diff
(100 %id)
CF456748 peripheral nervous system .a 4529 to 5227 1 to 699   tiling clone,   699/699
(100 %)
0 diff
(100 %id)
AA428211   .a 4566 to 4822 257 to 1       257/257
(100 %)
0 diff
(100 %id)
BM677920 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4650 to 4832 188 to 1   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 188/188
(100 %)
2 diff
(99.0 %id)
BU742834 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4650 to 4832 188 to 1   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 188/188
(100 %)
2 diff
(99.0 %id)
AU119436 whole embryo, mainly head .a 4704 to 5479 2 to 777   tiling clone, capped   776/776
(100 %)
4 diff
(99.5 %id)
AA328074   .a 4794 to 5108 1 to 317       317/317
(100 %)
2 diff
(99.4 %id)
R56537 whole brain .a 4819 to 5299 1 to 485       485/485
(100 %)
16 diff
(96.8 %id)
H05549 whole brain .a 4819 to 5266 1 to 452       452/452
(100 %)
10 diff
(97.8 %id)
F05192 brain, total brain .a 4833 to 5066 1 to 234       234/234
(100 %)
0 diff
(100 %id)
F06283 brain, total brain .a 4833 to 5123 1 to 291       291/291
(100 %)
0 diff
(100 %id)
R56142 whole brain .a 5494 to 5849 374 to 8   tiling clone,   367/398
(92 %)
0 diff
(100 %id)
Z39179 brain, total brain .a 5554 to 5848 295 to 1   tiling clone,   295/295
(100 %)
0 diff
(100 %id)
F01443 brain, total brain .a 5579 to 5848 270 to 1       270/270
(100 %)
0 diff
(100 %id)
AK314680 placenta .b 1 to 2072 2 to 2073 F41L S409G I476T tiling clone,   2073/2073
(100 %)
5 diff
(99.8 %id)
DA840776 placenta .b 1 to 553 2 to 554   capped   553/554
(99 %)
2 diff
(99.7 %id)
NM_152794.2   .b 20 to 5883 1 to 5864 exact RefSeq,   5864/5864
(100 %)
0 diff
(100 %id)
DA562618 heart .b 21 to 592 2 to 573   tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
DA844307 placenta .b 21 to 579 2 to 564   capped   563/563
(100 %)
5 diff
(99.2 %id)
AL541807 placenta .b 28 to 1084 1 to 1054       1054/1054
(100 %)
14 diff
(98.7 %id)
BX424575 placenta .b 28 to 833 1 to 805       805/805
(100 %)
8 diff
(99.1 %id)
BX464817 placenta .b 28 to 840 1 to 821       816/911
(89 %)
63 diff
(93.1 %id)
AB054067 Kidney .b 69 to 2072 1 to 2004 exact tiling clone,   2004/2004
(100 %)
2 diff
(100.0 %id)
CR612598 Placenta Cot 25-normalized .c 1 to 2088 1 to 2088 exact tiling clone,   2088/2088
(100 %)
0 diff
(100 %id)
AF463492   .d 1 to 2024 1 to 2023 exact tiling clone,   2023/2023
(100 %)
8 diff
(99.7 %id)
AB295039 Kidney .d 15 to 1944 1 to 1930 exact     1930/1930
(100 %)
2 diff
(99.9 %id)
AK027725 ovary, tumor tissue .d 15 to 2096 1 to 2082 A202V D497G tiling clone, available from FLJ,   2082/2082
(100 %)
5 diff
(99.8 %id)
DA811872 ovary, tumor tissue .d 16 to 717 2 to 710   capped   709/710
(99 %)
18 diff
(97.5 %id)
AL528423 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .d 51 to 1044 1 to 982   tiling clone,   982/985
(99 %)
21 diff
(97.9 %id)
AL528399 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .d 1049 to 2043 1011 to 23       989/1011
(97 %)
7 diff
(99.4 %id)
BX392615 Placenta Cot 25-normalized .d 1196 to 2083 888 to 1       888/888
(100 %)
9 diff
(99.0 %id)
DB371123 ovary, tumor tissue .d 1546 to 2096 548 to 1       548/548
(100 %)
16 diff
(97.1 %id)
DC423791 uterus .e 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
DC422052 uterus .e 13 to 571 1 to 560       560/560
(100 %)
2 diff
(99.7 %id)
TI_57182628   .e 17 to 658 20 to 661       642/661
(97 %)
1 diff
(99.9 %id)
DC337990 substantia nigra .e 22 to 599 1 to 578       578/578
(100 %)
0 diff
(100 %id)
BI772109 pooled lung and spleen .e 27 to 658 1 to 633       633/633
(100 %)
3 diff
(99.6 %id)
NM_022462.3   .e 27 to 5934 1 to 5908   RefSeq,   5908/5908
(100 %)
0 diff
(100 %id)
DB258777 uterus .e 36 to 606 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA930538 small intestine .e 44 to 599 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA949880 Spleen .e 48 to 602 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB255834 uterus .e 48 to 593 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DC354768 lung .e 51 to 624 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
DB037591 testis .e 51 to 625 2 to 576   capped   575/577
(99 %)
1 diff
(99.9 %id)
DA071681 cerebellum .e 52 to 613 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA491104 brain .e 52 to 603 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA566458 heart .e 52 to 613 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA632877 Kidney .e 52 to 606 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA854555 placenta .e 52 to 617 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA930550 small intestine .e 52 to 541 2 to 492   capped   491/491
(100 %)
2 diff
(99.6 %id)
DA933288 Spleen .e 52 to 614 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA933622 Spleen .e 52 to 577 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA960638 Spleen .e 52 to 621 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB250647 uterus .e 52 to 631 2 to 581   tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
DB257277 uterus .e 52 to 628 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB249617 uterus .e 53 to 511 2 to 460   capped   459/459
(100 %)
0 diff
(100 %id)
DA008648 adipose .e 56 to 597 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA777389 brain .e 56 to 573 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DA916566 small intestine .e 56 to 633 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA170485 amygdala .e 58 to 583 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
AU118510 whole embryo, mainly head .e 58 to 804 2 to 751   capped   750/755
(99 %)
11 diff
(98.6 %id)
DA764844 tongue .e 58 to 618 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA927001 small intestine .e 58 to 640 2 to 584   capped   583/584
(99 %)
2 diff
(99.7 %id)
DA934109 Spleen .e 58 to 631 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA961947 Spleen .e 58 to 612 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DB169115 kidney, tumor tissue .e 58 to 604 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB264412 uterus .e 58 to 621 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB274616 uterus .e 58 to 593 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BQ067192 pooled brain, lung, testis .e 71 to 884 1 to 816   tiling clone,   816/1157
(70 %)
11 diff
(99.1 %id)
DA918539 small intestine .e 82 to 643 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BX378914 Placenta Cot 25-normalized .e 83 to 884 1 to 792   tiling clone,   792/792
(100 %)
11 diff
(98.7 %id)
AU145056 whole embryo, mainly head .e 5385 to 5933 549 to 1   tiling clone,   549/549
(100 %)
7 diff
(98.8 %id)
AK299699 brain .f 1 to 2100 2 to 2101 Q292R tiling clone,   2101/2101
(100 %)
3 diff
(99.9 %id)
DC376084 brain .f 1 to 543 2 to 544       544/544
(100 %)
0 diff
(100 %id)
DC352641 brain .f 7 to 554 1 to 548       548/548
(100 %)
1 diff
(99.9 %id)
AL535689 brain, fetal brain .f 47 to 898 1 to 846   tiling clone,   846/846
(100 %)
9 diff
(99.0 %id)
AL535688 brain, fetal brain .f 1176 to 2070 893 to 1       895/893
(100 %)
15 diff
(98.4 %id)
AK297828 heart .g 1 to 2249 2 to 2250 exact tiling clone,   2250/2250
(100 %)
2 diff
(100.0 %id)
DA559979 heart .g 1 to 560 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA767573 tongue .g 37 to 619 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA935270 Spleen .g 37 to 621 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA936815 Spleen .g 37 to 629 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA825915 pericardium .g 43 to 608 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB257841 uterus .g 43 to 605 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA705175   .g 124 to 588 2 to 466   capped   465/465
(100 %)
1 diff
(99.8 %id)
AK021421 whole embryo, mainly head .h 1 to 1709 1 to 1708 I189V D198M D199T L200* tiling clone, available from FLJ,   1708/1708
(100 %)
4 diff
(99.8 %id)
AU116888 whole embryo, mainly head .h 2 to 789 2 to 794   capped   793/871
(91 %)
18 diff
(98.0 %id)
AU143858 whole embryo, mainly head .h 1167 to 1709 541 to 1       541/545
(99 %)
6 diff
(98.9 %id)
AA027108 uterus .h 1368 to 1709 343 to 1       343/354
(96 %)
8 diff
(97.8 %id)
AW439198 serous papillary carcinoma, high grade, 2pooled tumors, uterus .h 1397 to 1710 314 to 1   tiling clone,   314/324
(96 %)
8 diff
(97.6 %id)
AK304747 uterus .i 1 to 1486 1 to 1486 A256T tiling clone,   1486/1486
(100 %)
3 diff
(99.8 %id)
DC422828 uterus .i 1 to 535 1 to 535       535/535
(100 %)
0 diff
(100 %id)
AL519496 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .i 120 to 959 1 to 836   tiling clone,   836/842
(99 %)
3 diff
(99.7 %id)
AL519495 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .i 1247 to 2270 1013 to 1   tiling clone,   1013/1018
(99 %)
22 diff
(97.9 %id)
AB118749 cerebellum .j 1 to 1105 2 to 1106 Y356S tiling clone,   1106/1106
(100 %)
3 diff
(99.8 %id)
BF928618 nervous_tumor .j 617 to 964 41 to 384       344/384
(89 %)
4 diff
(99.0 %id)
AA371675 pituitary gland .j 979 to 1304 1 to 326   tiling clone,   326/326
(100 %)
1 diff
(99.7 %id)
DA917376 small intestine .k 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
DA001883   .k 18 to 559 2 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
CN406954 embryonic stem cells, DMSO-treated H9 cellline .k 22 to 290 1 to 269       269/269
(100 %)
2 diff
(99.3 %id)
BQ711593 Spleen .k 360 to 1076 1 to 716   tiling clone,   716/915
(78 %)
5 diff
(99.5 %id)
CF593418 Human Placenta, placenta .l 1 to 765 27 to 795 P3S V223G S224Q K225Q S226G ... tiling clone,   769/797
(96 %)
8 diff
(99.0 %id)
DC411496 kidney, tumor tissue .m 1 to 539 1 to 539 K133E Q160* tiling clone,   539/539
(100 %)
2 diff
(99.7 %id)
DN989983 brain, whole brain .n 1 to 514 1 to 514 S2R C3G tiling clone,   514/514
(100 %)
4 diff
(99.3 %id)
DA160522 amygdala .o 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA497612 brain .p 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
BF936011 nervous_tumor .q 1 to 321 1 to 320 S27T T31M G94* tiling clone,   320/324
(98 %)
9 diff
(97.3 %id)
BF370200 prostate_normal .r 1 to 307 310 to 4   tiling clone,   307/310
(99 %)
0 diff
(100 %id)
DA845531 placenta .r 190 to 737 2 to 549 exact tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
BF926959 nervous_tumor .s 1 to 245 10 to 252 F2L H6K S7P L8G D9H ... tiling clone,   243/269
(90 %)
5 diff
(98.2 %id)
AI039141   .t 1 to 424 416 to 1   tiling clone,   416/416
(100 %)
10 diff
(97.6 %id)
CF456540 peripheral nervous system .t 362 to 1161 32 to 826   tiling clone,   795/884
(89 %)
16 diff
(98.2 %id)
BI058319 placenta_normal .t 622 to 1073 1 to 450       450/450
(100 %)
3 diff
(99.4 %id)
BP373097 umbilical cord .t 623 to 1202 1 to 580 N57D tiling clone,   580/580
(100 %)
1 diff
(99.9 %id)
TI_149285420   .t 647 to 1617 1056 to 88 L2S L3S I4G L5I E6* AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 969/1163
(83 %)
81 diff
(93.1 %id)
AI133319 Liver .t 669 to 1356 1 to 689 N57D     689/689
(100 %)
5 diff
(99.3 %id)
TI_149287576   .t 696 to 1615 973 to 61 L2S L3X I4E L5S E6R ... AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 913/1185
(77 %)
36 diff
(97.0 %id)
W06936 lung .t 748 to 1090 1 to 363   tiling clone,   363/376
(96 %)
26 diff
(93.1 %id)
BQ722091 sympathetic trunk .t 761 to 1615 1 to 859 N57D     859/879
(97 %)
18 diff
(98.0 %id)
H78554 liver and spleen .t 821 to 1193 1 to 378       378/404
(93 %)
10 diff
(97.6 %id)
BM727831 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 902 to 1586 1 to 684       684/684
(100 %)
2 diff
(99.8 %id)
TI_149285862   .t 924 to 1617 781 to 88   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 694/694
(100 %)
2 diff
(99.8 %id)
BQ188179 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 931 to 1198 1 to 269   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 269/269
(100 %)
2 diff
(99.3 %id)
BM971722 lung .t 945 to 1617 689 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 673/673
(100 %)
2 diff
(99.8 %id)
BM972872 lung .t 996 to 1615 638 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 620/620
(100 %)
1 diff
(99.9 %id)
AW960466   .t 1007 to 1616 610 to 1     Submitted on the opposite strand 610/615
(99 %)
15 diff
(97.6 %id)
BU680859 lung .t 1041 to 1617 591 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 575/575
(100 %)
2 diff
(99.7 %id)
AW438491 endometrioid ovarian metastasis, ovary .t 1097 to 1364 275 to 8       268/275
(97 %)
0 diff
(100 %id)
CA438713 lung, Metastatic Chondrosarcoma .t 1098 to 1617 536 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 520/520
(100 %)
0 diff
(100 %id)
AW044635 pooled .t 1105 to 1617 523 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 513/513
(100 %)
3 diff
(99.5 %id)
AI697524 carcinoid, lung .t 1138 to 1617 499 to 20   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 480/480
(100 %)
5 diff
(99.0 %id)
AI281985 carcinoid, lung .t 1141 to 1618 478 to 1   tiling clone,   478/478
(100 %)
0 diff
(100 %id)
AI306123 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t 1151 to 1618 465 to 4       462/466
(99 %)
0 diff
(100 %id)
BF439358 pooled .t 1156 to 1617 472 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 462/462
(100 %)
3 diff
(99.4 %id)
AW294110   .t 1157 to 1617 476 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 461/461
(100 %)
1 diff
(99.8 %id)
AI264183 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t 1160 to 1618 460 to 2       459/460
(99 %)
0 diff
(100 %id)
BQ185343 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 1168 to 1617 467 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 451/451
(100 %)
2 diff
(99.6 %id)
AA955026 Kidney, kidney tumor .t 1170 to 1579 410 to 1       410/414
(99 %)
0 diff
(100 %id)
AI123844 heart .t 1187 to 1618 431 to 1       431/441
(97 %)
3 diff
(99.4 %id)
N90732 lung .t 1188 to 1617 422 to 1       422/432
(97 %)
9 diff
(98.0 %id)
AW270837 Kidney .t 1196 to 1616 429 to 9       421/429
(98 %)
0 diff
(100 %id)
N55980   .t 1205 to 1402 1 to 196       196/198
(98 %)
3 diff
(98.5 %id)
H79041 liver and spleen .t 1214 to 1582 374 to 1       374/375
(99 %)
6 diff
(98.4 %id)
BI771333 pooled lung and spleen .t 1214 to 1616 1 to 408       408/955
(42 %)
13 diff
(98.7 %id)
R56116 whole brain .t 1243 to 1618 392 to 8       385/445
(86 %)
0 diff
(100 %id)
W87539 liver and spleen .t 1249 to 1615 371 to 4       368/371
(99 %)
0 diff
(100 %id)
AA706005 heart .t 1271 to 1617 362 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 347/347
(100 %)
2 diff
(99.5 %id)
AI091960 heart .t 1271 to 1617 347 to 1       347/347
(100 %)
0 diff
(100 %id)
AI193777 lung .t 1277 to 1612 348 to 13   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 336/336
(100 %)
1 diff
(99.8 %id)
AI075316 liver and spleen .t 1294 to 1617 324 to 1       324/324
(100 %)
0 diff
(100 %id)
AA678093 liver and spleen .t 1295 to 1612 319 to 1       319/321
(99 %)
2 diff
(99.4 %id)
AI424406 Prostate .t 1442 to 1615 205 to 32   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 174/174
(100 %)
9 diff
(94.9 %id)
BU753724 placenta .t 1455 to 1612 175 to 18   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 158/159
(99 %)
2 diff
(98.8 %id)
C17429 placenta .u-u 1 to 549 1 to 545   tiling clone,   545/548
(99 %)
12 diff
(97.9 %id)
D79067 placenta .u-u 1 to 362 1 to 362       362/364
(99 %)
3 diff
(99.2 %id)
CA437428 lung, Metastatic Chondrosarcoma .u-u 482 to 1026 563 to 19 I10V T15A Q22R S31G tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 545/545
(100 %)
13 diff
(97.7 %id)
AA318113 retina .va-u 1 to 400 1 to 403   tiling clone,   403/403
(100 %)
11 diff
(97.3 %id)
AI745490 ovary, tumor, 5 pooled (see description) .va-u 399 to 869 486 to 17 V6F T29Q A30L T31L V32* tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 470/470
(100 %)
4 diff
(99.2 %id)
AI458646 carcinoid, lung .va-u 500 to 872 372 to 1 V6F T29Q A30L T31L V32* tiling clone,   372/372
(100 %)
3 diff
(99.2 %id)
AI692729 carcinoid, lung .va-u 500 to 872 372 to 1 V6F T29Q A30L T31L V32*     372/372
(100 %)
3 diff
(99.2 %id)
DC365097 esophagus .vb 1 to 556 1 to 557 L80F I81N S82Q Q83P V84G ... tiling clone,   557/557
(100 %)
2 diff
(99.7 %id)
BG011615 placenta_normal .vc-u 1 to 276 10 to 285 R2M P3T L4S A6G V7C ... tiling clone,   276/311
(88 %)
11 diff
(96.5 %id)
AK021653 whole embryo, mainly head Gene HIF3A, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK021737 whole embryo, mainly head Gene HIF3A, variant not shown       available from FLJ, This clone was ignored    
AK024095 whole embryo, mainly head Gene HIF3A, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BC026308 Brain, hippocampus Gene HIF3A, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
BX109724 liver and spleen Gene HIF3A, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
CV376458 testis_normal Gene HIF3A, variant not shown         This clone was ignored    
AL600136   Gene HIF3A, variant not shown              
DA540588 lung Gene HIF3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
AU145315 whole embryo, mainly head Gene HIF3A, variant not shown         Suspected internal deletion, this clone was ignored    
AU118844 whole embryo, mainly head Gene HIF3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
AU145409 whole embryo, mainly head Gene HIF3A, variant not shown         This clone was ignored    
AU118966 whole embryo, mainly head Gene HIF3A, variant not shown       capped This clone was ignored    
H56371 liver and spleen Gene HIF3A, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
H56372 liver and spleen Gene HIF3A, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
CD558421 White Matter Gene HIF3A, variant not shown              
DA918661 small intestine Gene HIF3A, variant not shown       capped      
DB331822 small intestine Gene HIF3A, variant not shown              
DA947279 Spleen Gene HIF3A, variant not shown       capped This clone was ignored    
DB333585 Spleen Gene HIF3A, variant not shown         This clone was ignored    
TI_149283982   Gene HIF3A, variant not shown         This clone was ignored    
BM984359 lung Gene HIF3A, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u-u, .va-u, .vb, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI