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Gene HIATL2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene HIATL2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM793983 Ascites, stomach .a-u 1 to 479 1 to 479   tiling clone,   479/479
(100 %)
6 diff
(98.8 %id)
AK127385 subthalamic nucleus .a-u 200 to 2962 1 to 2763 exact tiling clone, available from FLJ,   2763/2763
(100 %)
6 diff
(99.8 %id)
DA367467 subthalamic nucleus .a-u 201 to 750 2 to 552   capped   551/554
(99 %)
6 diff
(99.0 %id)
BG987770 head_neck .a-u 209 to 387 1 to 180       180/180
(100 %)
6 diff
(96.7 %id)
DB310767 subthalamic nucleus .a-u 2472 to 2962 491 to 1       491/491
(100 %)
4 diff
(99.2 %id)
BU538868 adenocarcinoma, cell line, breast .b 1 to 839 1 to 851 I124N L126T M127D R128E I129D ... tiling clone,   851/898
(94 %)
28 diff
(96.9 %id)
BU860202 adenocarcinoma, cell line, breast .b 1 to 841 1 to 851 W107X A141L G142E E143S Q144S ... tiling clone,   851/936
(90 %)
17 diff
(98.2 %id)
BF692482 melanotic melanoma, high MDR, skin .b 790 to 1331 1 to 543   tiling clone,   543/884
(61 %)
23 diff
(97.4 %id)
BG481645 choriocarcinoma, placenta .c 1 to 808 1 to 808 F74I S75F Q76S H77T T78H ... tiling clone,   808/843
(95 %)
42 diff
(95.1 %id)
BY796024 eye .c 2 to 614 1 to 613       613/613
(100 %)
1 diff
(99.9 %id)
CN261783 embryonic stem cells, DMSO-treated H9 cellline .c 18 to 484 1 to 468       468/468
(100 %)
6 diff
(98.8 %id)
BU860022 adenocarcinoma, cell line, breast .c 66 to 722 1 to 656       656/913
(71 %)
12 diff
(98.7 %id)
BM745109 Ascites, stomach .c 86 to 206 1 to 121       121/121
(100 %)
2 diff
(98.4 %id)
BM741488 Ascites, stomach .c 87 to 590 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
BM744157 Ascites, stomach .c 87 to 516 1 to 430       430/430
(100 %)
1 diff
(99.8 %id)
BM752534 Ascites, stomach .c 87 to 398 1 to 311       311/311
(100 %)
7 diff
(97.8 %id)
BM753408 Ascites, stomach .c 87 to 652 1 to 566       566/566
(100 %)
3 diff
(99.5 %id)
BM757163 Ascites, stomach .c 87 to 597 1 to 510       510/510
(100 %)
2 diff
(99.7 %id)
BM744866 Ascites, stomach .c 87 to 264 1 to 178       178/178
(100 %)
0 diff
(100 %id)
BM764582 Ascites, stomach .c 87 to 565 1 to 479       479/479
(100 %)
5 diff
(99.0 %id)
BM764634 Ascites, stomach .c 87 to 631 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
BM764581 Ascites, stomach .c 87 to 708 1 to 622       622/622
(100 %)
1 diff
(99.9 %id)
BM765157 Ascites, stomach .c 87 to 445 1 to 359       359/359
(100 %)
1 diff
(99.8 %id)
BM764913 Ascites, stomach .c 87 to 632 1 to 546       546/546
(100 %)
2 diff
(99.7 %id)
BM764991 Ascites, stomach .c 87 to 632 1 to 546       546/546
(100 %)
3 diff
(99.5 %id)
BM781651 Ascites, stomach .c 87 to 270 1 to 184       184/184
(100 %)
0 diff
(100 %id)
BM781658 Ascites, stomach .c 87 to 686 1 to 600       600/600
(100 %)
1 diff
(99.9 %id)
BM772726 Ascites, stomach .c 87 to 549 1 to 463       463/463
(100 %)
1 diff
(99.8 %id)
BM772727 Ascites, stomach .c 87 to 649 1 to 563       563/564
(99 %)
6 diff
(99.0 %id)
BM785247 myeloma .c 87 to 692 1 to 605   tiling clone,   605/605
(100 %)
1 diff
(99.9 %id)
BX283532 melanotic melanoma, skin .c 92 to 610 14 to 532       519/532
(97 %)
5 diff
(99.1 %id)
BE302651 melanotic melanoma, skin .c 101 to 634 1 to 532   available from MGC,   532/532
(100 %)
3 diff
(99.5 %id)
BM753323 Ascites, stomach .c 251 to 481 1 to 231       231/231
(100 %)
1 diff
(99.6 %id)
BF737592 bladder_tumor .c 421 to 911 494 to 2     Submitted on the opposite strand 493/504
(97 %)
8 diff
(98.5 %id)
CR620736 fetal brain .c 421 to 1507 1 to 1087   tiling clone,   1087/1087
(100 %)
0 diff
(100 %id)
BX460401 brain, fetal brain .c 421 to 1252 1 to 832       832/832
(100 %)
3 diff
(99.7 %id)
BX463890 brain, fetal brain .c 424 to 1295 1 to 866       864/882
(97 %)
45 diff
(94.9 %id)
TI_1948096118   .c 509 to 715 129 to 335       207/1401
(14 %)
6 diff
(99.6 %id)
TI_1948096547   .c 509 to 715 130 to 336       207/1340
(15 %)
6 diff
(99.6 %id)
CN261784 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 544 to 1183 1 to 640       640/640
(100 %)
1 diff
(99.9 %id)
BX434935 brain, fetal brain .c 710 to 1507 802 to 1       802/802
(100 %)
29 diff
(96.4 %id)
DA995657 synovial membrane tissue from rheumatioidarthritis .c 1054 to 1635 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BQ930316 sciatic nerve .c 1150 to 1510 1 to 361   AAA   361/361
(100 %)
0 diff
(100 %id)
DW438076 Liver .c 1350 to 1529 68 to 247       180/247
(72 %)
6 diff
(97.6 %id)
CN359768 embryonic stem cells, cell lines H1, H7, andH9 .c 1406 to 2104 10 to 708   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 699/708
(98 %)
6 diff
(99.2 %id)
AV705823 adrenal gland .c 1758 to 2104 251 to 597   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 347/599
(57 %)
2 diff
(99.7 %id)
BG397217 melanotic melanoma, skin .d 1 to 751 1 to 755 R109T K110E P111A F112L L113S ... tiling clone,   755/807
(93 %)
8 diff
(99.1 %id)
BC005058 Skin, melanotic melanoma. .d 2 to 785 1 to 784 exact tiling clone, available from MGC, AAA   784/784
(100 %)
0 diff
(100 %id)
NR_002894.1   .d 2 to 785 1 to 784 exact RefSeq, AAA   784/784
(100 %)
0 diff
(100 %id)
BE208678 melanotic melanoma, skin .d 327 to 787 462 to 1   available from MGC,   462/462
(100 %)
5 diff
(99.0 %id)
CV026913 mixed .d 411 to 667 1 to 257       257/440
(58 %)
1 diff
(99.8 %id)
BX440409 brain, fetal brain .e 1 to 1036 1 to 1023 S2X Q30R A31P A32R S34A ... tiling clone, fully sequenced,   1023/1023
(100 %)
29 diff
(97.2 %id)
CX166536 human embryonic stem cells differentiated toan early endodermal cell type .e 79 to 868 1 to 790 exact tiling clone,   790/790
(100 %)
0 diff
(100 %id)
BQ229742 melanotic melanoma, skin .e 798 to 1566 1 to 773   tiling clone,   773/915
(84 %)
16 diff
(98.3 %id)
BX454755 brain, fetal brain .e 1006 to 1861 849 to 1   fully sequenced,   849/849
(100 %)
46 diff
(94.6 %id)
BQ717918 sympathetic trunk .e 1012 to 1644 168 to 804   AAA   637/806
(79 %)
30 diff
(96.3 %id)
BM991661 Bone, Subchondral Bone .e 1140 to 1879 755 to 19   AAA   737/737
(100 %)
8 diff
(99.0 %id)
H92076 eye, retina .e 1203 to 1631 441 to 2       440/441
(99 %)
0 diff
(100 %id)
AA483003 Ewing's sarcoma .e 1230 to 1644 441 to 25   tiling clone, AAA   417/417
(100 %)
3 diff
(99.3 %id)
BE767474 nervous_tumor .e 1359 to 1728 1 to 372       372/417
(89 %)
13 diff
(96.9 %id)
DB570854 hypothalamus .e 1434 to 1879 1 to 446   AAA Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
DB517908 testis .e 1444 to 1879 1 to 436     Submitted on the opposite strand 436/436
(100 %)
0 diff
(100 %id)
BF447086 Prostate .e 1520 to 1880 361 to 1   tiling clone,   361/361
(100 %)
0 diff
(100 %id)
AA868475   .e 1525 to 1880 359 to 4       356/359
(99 %)
0 diff
(100 %id)
AW023737 cochlea, ear .e 1525 to 1869 8 to 352       345/352
(98 %)
6 diff
(98.3 %id)
AA603869   .e 1578 to 1880 311 to 9       303/393
(77 %)
0 diff
(100 %id)
AW582039 stomach .e 1657 to 2173 543 to 33   tiling clone,   511/543
(94 %)
0 diff
(100 %id)
AW900417 nervous_normal .e 1676 to 1981 13 to 318   tiling clone,   306/318
(96 %)
6 diff
(98.2 %id)
R47433   .e 1724 to 1957 1 to 231       231/231
(100 %)
3 diff
(98.8 %id)
CD656403 Embryonic Stem cells .e 2063 to 2866 12 to 808   tiling clone,   797/849
(93 %)
27 diff
(96.9 %id)
AI745514 ovary, tumor, 5 pooled (see description) .e 2392 to 2620 229 to 1   tiling clone,   229/229
(100 %)
0 diff
(100 %id)
BM463526 leiomyosarcoma, uterus .f 1 to 593 1 to 593 H77P T78H F79S L80S M81* tiling clone,   767/1071
(71 %)
24 diff
(97.8 %id)
BG166937 hypernephroma, cell line, Kidney .g 1 to 649 8 to 660 S34R T35H S43T F62* tiling clone,   653/1087
(60 %)
18 diff
(98.4 %id)
BX411332 brain, fetal brain .h 1 to 790 789 to 1 exact tiling clone,   789/911
(86 %)
25 diff
(97.3 %id)
CB178034 Pancreas, Purified pancreatic islet .h 335 to 922 588 to 1       588/588
(100 %)
9 diff
(98.5 %id)
BG960082 colon .h 358 to 607 1 to 253       253/258
(98 %)
18 diff
(93.1 %id)
CV571021 cornea, eye .h 485 to 1095 1 to 611   tiling clone,   611/611
(100 %)
0 diff
(100 %id)
CV571050 cornea, eye .h 485 to 1028 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DB452382 testis .i 1 to 482 1 to 482 exact tiling clone,   482/482
(100 %)
0 diff
(100 %id)
DR003476 fetal brain .i 26 to 466 8 to 448       441/448
(98 %)
6 diff
(98.7 %id)
BM810552 astrocytoma grade IV, cell line, brain .i 27 to 611 1 to 585 exact tiling clone,   585/1431
(40 %)
14 diff
(99.1 %id)
BG185038   .j 1 to 417 1 to 417 exact tiling clone,   417/422
(98 %)
2 diff
(99.6 %id)
BG207310   .j 1 to 419 1 to 417 exact tiling clone,   417/419
(99 %)
7 diff
(98.4 %id)
BU615856 Bone, Subchondral Bone .k 1 to 531 549 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 531/531
(100 %)
2 diff
(99.7 %id)
TI_154110348   .k 97 to 908 899 to 97 exact tiling clone,   806/1006
(80 %)
16 diff
(98.5 %id)
BM726969 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k 363 to 909 1 to 546 exact     546/548
(99 %)
9 diff
(98.4 %id)
BF379599 uterus_tumor .k 639 to 856 227 to 9       219/238
(92 %)
0 diff
(100 %id)
CV315695 marrow .k 885 to 989 104 to 1   tiling clone, Submitted on the opposite strand 104/104
(100 %)
7 diff
(93.3 %id)
CD514977 White Matter .l-u 1 to 884 1 to 888 H14R tiling clone,   888/999
(88 %)
16 diff
(98.4 %id)
AA326176 brain, cerebellum .l-u 16 to 416 1 to 403   tiling clone,   403/405
(99 %)
5 diff
(98.8 %id)
BF817156 colon_ins .m 1 to 281 1 to 281   tiling clone,   281/281
(100 %)
0 diff
(100 %id)
BF919661 nervous_tumor .m 107 to 530 11 to 434 exact tiling clone,   424/434
(97 %)
7 diff
(98.4 %id)
AW316920 brain, three pooled meningiomas .n-u 1 to 348 348 to 1 exact tiling clone,   348/348
(100 %)
0 diff
(100 %id)
BF868453.
matches multiple genes
lung_tumor .n-u 175 to 356 14 to 197   tiling clone, also hits gene sperplarbu 184/197
(93 %)
6 diff
(97.0 %id)
BF868454.
matches multiple genes
lung_tumor .n-u 182 to 356 12 to 186   tiling clone, also hits gene sperplarbu 175/186
(94 %)
6 diff
(96.8 %id)
EG328013 pooled Gene HIATL2, variant not shown         This clone was ignored    
AW276441 lung, two pooled squamous cell carcinomas Gene HIATL2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C