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Gene HHLA2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
65 supporting clones for gene HHLA2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA930592 small intestine .a 1 to 585 2 to 586   tiling clone, capped   585/585
(100 %)
2 diff
(99.7 %id)
AA135329 colon, tumor .a 538 to 665 1 to 129   tiling clone,   129/129
(100 %)
2 diff
(98.5 %id)
AK027132 ileal mucosa .a 588 to 3241 1 to 2654   tiling clone, available from FLJ, AAA   2654/2654
(100 %)
3 diff
(99.9 %id)
AA135407 colon, tumor .a 2822 to 3239 435 to 18   tiling clone, AAA   418/418
(100 %)
0 diff
(100 %id)
BG426959 Kidney .b 1 to 762 1 to 756   tiling clone,   756/756
(100 %)
20 diff
(97.4 %id)
BC035971 Kidney .b 2 to 2660 1 to 2659 exact tiling clone, available from MGC, AAA   2659/2659
(100 %)
4 diff
(99.9 %id)
NM_007072.2   .b 2 to 2660 1 to 2659 exact RefSeq, AAA   2659/2659
(100 %)
4 diff
(99.9 %id)
DA626577 Kidney .b 18 to 567 2 to 555   tiling clone, capped   554/554
(100 %)
5 diff
(99.1 %id)
BP292661 lung .c 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
6 diff
(99.0 %id)
DA593069 lung .c 38 to 486 2 to 451   capped   450/451
(99 %)
3 diff
(99.4 %id)
DA630795 Kidney .c 57 to 628 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB243112 stomach, tumor tissue .c 57 to 623 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
AK000692 ileal mucosa .c 73 to 2467 1 to 2396 W221* tiling clone, available from FLJ, AAA   2396/2396
(100 %)
5 diff
(99.8 %id)
AW852303 colon .c 456 to 826 374 to 4       371/374
(99 %)
6 diff
(98.4 %id)
BP383085 ilea mucosa .c 564 to 1221 1 to 654   tiling clone,   654/955
(68 %)
9 diff
(99.1 %id)
DB232201 trachea .c 854 to 1437 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
BG283385 adenocarcinoma, cell line, Prostate .c 1189 to 1969 1 to 777       777/935
(83 %)
17 diff
(98.2 %id)
BM797927 Ascites, stomach .c 1441 to 1844 1 to 404       404/404
(100 %)
6 diff
(98.6 %id)
AW938325 denis_drash .c 1480 to 2102 623 to 1     Submitted on the opposite strand 623/623
(100 %)
7 diff
(98.9 %id)
BM769580 stomach .c 1482 to 1926 1 to 445       445/445
(100 %)
2 diff
(99.6 %id)
BQ083573 stomach .c 1482 to 1851 1 to 370       370/370
(100 %)
1 diff
(99.8 %id)
TI_149302594   .c 1528 to 2464 986 to 58   AAA   929/977
(95 %)
27 diff
(97.3 %id)
AW937301 denis_drash .c 1620 to 1940 1 to 314       314/314
(100 %)
17 diff
(94.6 %id)
TI_149306362   .c 1668 to 2138 559 to 89   AAA   471/977
(48 %)
0 diff
(100 %id)
BU686407 lung, Primary Lung Epithelial Cells .c 1668 to 2138 488 to 18   tiling clone, AAA   471/479
(98 %)
0 diff
(100 %id)
BM823273 Ascites, stomach .c 1695 to 2214 1 to 520       520/520
(100 %)
1 diff
(99.9 %id)
BG953325 colon .c 1760 to 1959 200 to 1       200/200
(100 %)
1 diff
(99.5 %id)
BG953326 colon .c 1760 to 2115 362 to 10       353/362
(97 %)
8 diff
(97.8 %id)
BG953324 colon .c 1976 to 2115 153 to 16       138/153
(90 %)
0 diff
(100 %id)
AF126162   .d 1 to 2402 1 to 2402 exact tiling clone,   2402/2406
(99 %)
3 diff
(99.9 %id)
BM980981 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 1685 to 2403 735 to 17   AAA   719/726
(99 %)
4 diff
(99.5 %id)
BM980757 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 1685 to 2398 731 to 19   AAA   713/713
(100 %)
4 diff
(99.5 %id)
TI_149288753   .d 1714 to 2401 747 to 63   AAA   685/685
(100 %)
5 diff
(99.3 %id)
BM970569 lung .d 1746 to 2401 671 to 17   AAA   655/655
(100 %)
2 diff
(99.7 %id)
TI_149279731   .d 1777 to 2401 675 to 54   AAA   622/1093
(56 %)
3 diff
(99.8 %id)
BM969731 lung, Primary Lung Epithelial Cells .d 1777 to 2401 638 to 17   AAA   622/631
(98 %)
3 diff
(99.6 %id)
TI_149283238   .d 1780 to 2401 148 to 769     Submitted on the opposite strand 622/769
(80 %)
6 diff
(99.3 %id)
BU680122 lung, Primary Lung Epithelial Cells .d 1780 to 2357 53 to 630     Submitted on the opposite strand 578/630
(91 %)
9 diff
(98.6 %id)
AA554037 colon, tumor .d 1934 to 2404 470 to 1   tiling clone,   470/470
(100 %)
2 diff
(99.6 %id)
AI261331 Kidney .d 2009 to 2404 396 to 1       396/396
(100 %)
3 diff
(99.3 %id)
BP293912 lung .e 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
DA432390 colon .e 19 to 598 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA432391 colon .e 19 to 578 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA626473 Kidney .e 44 to 616 2 to 574   tiling clone, capped   573/573
(100 %)
3 diff
(99.5 %id)
DA428495 colon .e 54 to 615 2 to 563   capped   562/564
(99 %)
4 diff
(99.3 %id)
AK315109 colon .e 56 to 1495 1 to 1440 S321T tiling clone,   1440/1440
(100 %)
4 diff
(99.8 %id)
DA425100 colon .e 57 to 600 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA432352 colon .e 60 to 512 2 to 454   capped   453/453
(100 %)
1 diff
(99.8 %id)
DA925794 small intestine .e 60 to 632 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA928347 small intestine .e 60 to 639 2 to 582   tiling clone, capped   581/581
(100 %)
2 diff
(99.7 %id)
DA431774 colon .e 66 to 602 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
DA586240 lung .e 66 to 667 2 to 603   capped   602/602
(100 %)
1 diff
(99.9 %id)
DA427786 colon .e 68 to 621 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
AK296644 colon .f 1 to 1457 1 to 1457 exact tiling clone,   1457/1457
(100 %)
3 diff
(99.8 %id)
DC345116 colon .f 1 to 576 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DB210364 trachea .g 1 to 608 10 to 620   tiling clone, capped   611/611
(100 %)
5 diff
(99.2 %id)
DB207242 trachea .g 11 to 618 2 to 613   capped   612/612
(100 %)
5 diff
(99.2 %id)
BP261821 small intestine .g 32 to 597 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
DA376151 thalamus .g 48 to 599 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
BP262668 small intestine .g 57 to 640 1 to 584 exact tiling clone,   584/584
(100 %)
2 diff
(99.7 %id)
BX483821   .g 58 to 528 1 to 471       471/471
(100 %)
3 diff
(99.4 %id)
DA537450 Kidney .g 69 to 614 2 to 549   capped   548/548
(100 %)
4 diff
(99.3 %id)
TI_149302861   .h 1 to 895 974 to 86 A5E L7C A8T A9F F10L ... tiling clone, AAA   889/973
(91 %)
20 diff
(98.0 %id)
BX483882   .i-u 1 to 593 1 to 593 exact tiling clone,   593/593
(100 %)
0 diff
(100 %id)
BG431193 Kidney .j 1 to 567 3 to 568 exact tiling clone,   568/568
(100 %)
4 diff
(99.3 %id)
DC414991 trachea .k 1 to 380 1 to 380 exact tiling clone,   380/380
(100 %)
1 diff
(99.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C