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Gene HHLA1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
11 supporting clones for gene HHLA1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001145095.1   .a 1 to 4105 1 to 4105 exact RefSeq,   4105/4105
(100 %)
0 diff
(100 %id)
EG328195 pooled .a 32 to 443 412 to 1   tiling clone, Submitted on the opposite strand 412/469
(87 %)
2 diff
(99.6 %id)
EG328194 pooled .a 80 to 484 1 to 404       404/404
(100 %)
4 diff
(99.1 %id)
TI_985974677   .a 238 to 1172 13 to 942   tiling clone, fully sequenced, AAA   930/942
(98 %)
24 diff
(97.5 %id)
DV080717 pooled .a 264 to 925 1 to 662   tiling clone,   662/664
(99 %)
9 diff
(98.7 %id)
DV080718 pooled .a 478 to 1129 652 to 1   tiling clone, Submitted on the opposite strand 652/654
(99 %)
7 diff
(99.0 %id)
TI_985974676   .a 559 to 1163 614 to 9   tiling clone, fully sequenced,   606/614
(98 %)
3 diff
(99.6 %id)
AK022619   .a 2085 to 4105 1 to 2021   tiling clone, available from FLJ,   2021/2021
(100 %)
5 diff
(99.8 %id)
AU124948   .a 2086 to 2881 2 to 795   capped   794/798
(99 %)
4 diff
(99.5 %id)
AU148706   .a 3649 to 4105 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AF110315 teratocarcinoma .b 1 to 2268 8 to 2275 L247S tiling clone,   2268/2290
(99 %)
4 diff
(99.9 %id)
CX760803 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1 to 698 30 to 724 W113X P120L W121X P130T G131X ... tiling clone, Submitted on the opposite strand 695/801
(86 %)
3 diff
(99.7 %id)
Z14310.
matches multiple genes
  Gene HHLA1, variant not shown         This clone was ignored, also hits gene OC90    
Z14310.
matches multiple genes
  Gene OC90, variant not shown         This clone was ignored, also hits gene OC90    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC