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Gene HDHD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
290 supporting clones for gene HDHD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001135565.1   .a -8 to 2200 1 to 2209 exact RefSeq, AAA   2209/2209
(100 %)
0 diff
(100 %id)
DR156836 human embryonic stem cells differentiated toan early endodermal cell type .a 24 to 823 1 to 800   tiling clone,   800/800
(100 %)
0 diff
(100 %id)
BP197523 adrenal gland .a 29 to 612 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DB269489 uterus .a 32 to 524 2 to 495   capped   494/495
(99 %)
2 diff
(99.6 %id)
DA753304   .a 41 to 601 6 to 566   capped   561/565
(99 %)
8 diff
(98.6 %id)
DA480379   .a 47 to 599 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA972167 synovial membrane tissue from rheumatioidarthritis .a 47 to 601 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BI765662 pooled colon, kidney, stomach .a 62 to 460 30 to 429       400/431
(92 %)
8 diff
(98.2 %id)
TI_57146776   .a 62 to 460 30 to 429       400/431
(92 %)
8 diff
(98.2 %id)
AA262524 germinal center B cell .a 190 to 620 7 to 437       435/437
(99 %)
9 diff
(98.0 %id)
DA544766   .a 233 to 792 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
CB163014 Liver .a 287 to 452 1 to 167       167/167
(100 %)
2 diff
(98.9 %id)
AA471349   .a 310 to 645 1 to 333       333/392
(84 %)
32 diff
(91.9 %id)
BI114833 muscle, rhabdomyosarcoma .a 351 to 1105 1 to 763   tiling clone,   763/765
(99 %)
33 diff
(95.7 %id)
BG341895 B-cells, primary B-cells from tonsils (cell line) .a 361 to 1115 1 to 749   tiling clone,   749/760
(98 %)
30 diff
(96.1 %id)
AA261870 germinal center B cell .a 1831 to 2200 370 to 1   tiling clone,   370/370
(100 %)
0 diff
(100 %id)
DC388394 small intestine .b -9 to 563 1 to 573   tiling clone,   573/573
(100 %)
1 diff
(99.9 %id)
NM_012080.4   .b -8 to 2131 1 to 2140 exact RefSeq, AAA   2140/2140
(100 %)
0 diff
(100 %id)
DC302647 cerebellum .b 1 to 549 7 to 555       555/555
(100 %)
1 diff
(99.9 %id)
DC359925   .b 1 to 561 7 to 567       567/567
(100 %)
0 diff
(100 %id)
DC393625 colon, tumor tissue .b 1 to 569 7 to 575       575/575
(100 %)
1 diff
(99.9 %id)
DC397133 testis .b 1 to 559 7 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC339723 thalamus .b 1 to 555 6 to 560       560/560
(100 %)
0 diff
(100 %id)
DC365152   .b 1 to 560 2 to 561       561/561
(100 %)
4 diff
(99.3 %id)
AU141098 thyroid gland .b 1 to 586 2 to 587   capped   586/673
(87 %)
11 diff
(98.4 %id)
DC420414 uterus .b 2 to 556 1 to 555       555/555
(100 %)
6 diff
(99.0 %id)
DC359828   .b 17 to 578 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC361628 Kidney .b 21 to 573 1 to 553       553/553
(100 %)
4 diff
(99.3 %id)
DC393263 breast, tumor tissue .b 21 to 552 1 to 532       532/532
(100 %)
1 diff
(99.9 %id)
DA272072 caudate nucleus .b 28 to 651 2 to 625   capped   624/624
(100 %)
5 diff
(99.2 %id)
AK313155 brain .b 29 to 755 1 to 727 exact     727/727
(100 %)
1 diff
(99.9 %id)
DC305884 cerebellum .b 29 to 585 1 to 557       557/561
(99 %)
10 diff
(98.3 %id)
DC316125 amygdala .b 29 to 585 1 to 557       557/568
(98 %)
6 diff
(99.0 %id)
DA477569   .b 29 to 611 2 to 584   capped   583/583
(100 %)
4 diff
(99.4 %id)
DC358353 lung .b 29 to 575 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
DC359101 lung .b 29 to 585 1 to 557       557/571
(97 %)
9 diff
(98.5 %id)
DC368831   .b 29 to 532 1 to 505       505/505
(100 %)
2 diff
(99.7 %id)
DC379430 pericardium .b 29 to 607 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
DC380431 placenta .b 29 to 563 1 to 535       535/535
(100 %)
4 diff
(99.3 %id)
DC384665   .b 29 to 585 1 to 557       557/570
(97 %)
6 diff
(99.0 %id)
DC387177   .b 29 to 585 1 to 558       558/564
(98 %)
12 diff
(97.9 %id)
DC389445 Spleen .b 29 to 557 1 to 529       529/529
(100 %)
0 diff
(100 %id)
DC393043 breast, tumor tissue .b 29 to 584 1 to 556       556/556
(100 %)
0 diff
(100 %id)
DC405660 thymus .b 29 to 585 1 to 557       557/571
(97 %)
7 diff
(98.8 %id)
DC406465 thymus .b 29 to 557 28 to 556       529/556
(95 %)
6 diff
(99.0 %id)
DA018829   .b 30 to 787 2 to 762 L214C Q215X D216T Q218S E220S ... capped   761/799
(95 %)
11 diff
(98.7 %id)
DA527139 brain .b 30 to 615 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA844465 placenta .b 30 to 585 2 to 557   capped   556/556
(100 %)
9 diff
(98.4 %id)
DA620419   .b 31 to 585 2 to 557   capped   556/574
(96 %)
7 diff
(98.8 %id)
DA652511   .b 31 to 614 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA652545   .b 31 to 623 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
AK223405   .b 34 to 1068 1 to 1035 D153G     1035/1035
(100 %)
2 diff
(99.9 %id)
AU099056   .b 34 to 333 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
BP241836 Liver .b 34 to 607 1 to 574       574/574
(100 %)
5 diff
(99.2 %id)
DB269184 uterus .b 34 to 513 2 to 482   capped   481/481
(100 %)
3 diff
(99.4 %id)
DA342873 substantia nigra .b 35 to 613 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA048122   .b 38 to 573 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
DA558893   .b 38 to 578 2 to 542   capped   541/543
(99 %)
2 diff
(99.7 %id)
DA928721 small intestine .b 38 to 578 2 to 542   capped   541/547
(98 %)
6 diff
(99.0 %id)
DB175107 kidney, tumor tissue .b 38 to 585 2 to 549   capped   548/565
(96 %)
9 diff
(98.5 %id)
DA014156 adrenal gland .b 39 to 606 2 to 569   capped   568/568
(100 %)
6 diff
(99.0 %id)
BM922998 leukocyte .b 41 to 854 7 to 826 E220R L221A F222V G223W L224F ...     820/1133
(72 %)
19 diff
(98.4 %id)
CD701265 normal nasopharynx .b 44 to 527 29 to 513       485/513
(94 %)
13 diff
(97.5 %id)
TI_57236021   .b 44 to 732 24 to 713       690/745
(92 %)
21 diff
(97.2 %id)
DA653367   .b 44 to 639 2 to 598   capped   597/597
(100 %)
3 diff
(99.5 %id)
BP203226 coronary artery .b 46 to 616 1 to 571       571/571
(100 %)
5 diff
(99.2 %id)
DA486102 brain .b 46 to 618 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BP293453 lung .b 46 to 628 1 to 583       583/583
(100 %)
10 diff
(98.3 %id)
BP293690 lung .b 46 to 626 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
DA665599   .b 46 to 585 2 to 541   capped   540/550
(98 %)
7 diff
(98.8 %id)
BP328152 prostata .b 46 to 629 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DA912954   .b 46 to 615 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BP339093 Spleen .b 46 to 573 1 to 530       530/581
(91 %)
20 diff
(96.6 %id)
DB197430 trachea .b 46 to 612 2 to 568   capped   567/567
(100 %)
5 diff
(99.2 %id)
DA014279 adrenal gland .b 47 to 597 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA063656 cerebellum .b 47 to 617 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA182674 amygdala .b 47 to 620 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA527934 brain .b 47 to 630 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA555403   .b 47 to 596 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA585100 lung .b 47 to 576 11 to 540   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA587294 lung .b 47 to 585 2 to 539   capped   538/556
(96 %)
7 diff
(98.8 %id)
DA602642   .b 47 to 369 2 to 324   capped   323/323
(100 %)
0 diff
(100 %id)
BU945249 mixed (pool of 40 RNAs) .b 47 to 853 1 to 816 T88M Q190X D196E G197R S200N ...     816/821
(99 %)
30 diff
(96.4 %id)
DA648937   .b 47 to 585 2 to 540   capped   539/545
(98 %)
6 diff
(98.9 %id)
DA681791 ovary .b 47 to 611 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
DA693622   .b 47 to 617 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA706672   .b 47 to 585 2 to 540   capped   539/550
(98 %)
6 diff
(99.0 %id)
DA711358   .b 47 to 607 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA713748   .b 47 to 585 2 to 540   capped   539/542
(99 %)
6 diff
(98.9 %id)
AU125327   .b 47 to 805 2 to 762 F222V G223W L224F P225A S226L ... capped   761/763
(99 %)
7 diff
(99.1 %id)
DA822486 pericardium .b 47 to 612 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
AU136491 placenta .b 47 to 746 2 to 705   capped   704/714
(98 %)
11 diff
(98.5 %id)
DA848402 placenta .b 47 to 563 2 to 518   capped   517/517
(100 %)
4 diff
(99.3 %id)
DA888166   .b 47 to 585 2 to 540   capped   539/553
(97 %)
6 diff
(99.0 %id)
DA909649   .b 47 to 622 2 to 577   capped   576/576
(100 %)
4 diff
(99.4 %id)
DA921438 small intestine .b 47 to 585 2 to 540   capped   539/553
(97 %)
9 diff
(98.4 %id)
DA959571 Spleen .b 47 to 563 2 to 520   capped   519/519
(100 %)
3 diff
(99.5 %id)
BE439894 Trabecular meshwork .b 48 to 650 1 to 603       601/603
(99 %)
10 diff
(98.4 %id)
BG419948 Kidney, renal cell adenocarcinoma .b 48 to 763 1 to 712 L185W A186Q A187L M189C Q190R ...     712/956
(74 %)
17 diff
(98.3 %id)
BG419964 Kidney, renal cell adenocarcinoma .b 48 to 858 1 to 813 L185W A186Q A187L M189C Q190R ...     813/1045
(77 %)
42 diff
(96.0 %id)
BG424812 Kidney, renal cell adenocarcinoma .b 48 to 810 1 to 762 E182D A183G A184G L185P A186G ...     762/1097
(69 %)
24 diff
(97.9 %id)
DA607254   .b 48 to 585 2 to 539   capped   538/553
(97 %)
7 diff
(98.8 %id)
DB002122 breast, tumor tissue .b 50 to 612 9 to 571   capped   563/570
(98 %)
6 diff
(99.0 %id)
DB046691 testis .b 50 to 612 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA137255 alzheimer cortex .b 51 to 614 2 to 565   capped   564/564
(100 %)
4 diff
(99.3 %id)
DA419592 cord Blood .b 51 to 609 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AL544279 placenta, Placenta Cot 25-normalized .b 51 to 1027 1 to 965 Q6X T9X H10X Y37X K81S ...     961/965
(99 %)
40 diff
(95.9 %id)
DA523643 brain .b 51 to 610 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA598626   .b 51 to 585 2 to 536   capped   535/543
(98 %)
7 diff
(98.8 %id)
BI910034 leukocyte .b 51 to 732 1 to 683       683/715
(95 %)
16 diff
(97.8 %id)
DA679926   .b 51 to 604 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
DA694869   .b 51 to 585 2 to 536   capped   535/552
(96 %)
6 diff
(99.0 %id)
DA699010   .b 51 to 575 2 to 527   capped   526/526
(100 %)
2 diff
(99.7 %id)
DA747282   .b 51 to 615 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA765233 tongue .b 51 to 621 2 to 572   capped   571/571
(100 %)
5 diff
(99.2 %id)
DA821677 pericardium .b 51 to 622 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA908685   .b 51 to 614 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA913007   .b 51 to 625 2 to 576   capped   575/575
(100 %)
4 diff
(99.4 %id)
DA965774 stomach .b 51 to 622 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA690473   .b 52 to 260 2 to 210   capped   209/209
(100 %)
0 diff
(100 %id)
BX378380 Placenta Cot 25-normalized .b 54 to 1017 1 to 958 R36P Y37L D38*     958/979
(97 %)
20 diff
(98.0 %id)
T28058 brain .b 55 to 258 1 to 204       204/209
(97 %)
1 diff
(99.6 %id)
DA630644 Kidney .b 56 to 629 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
BP375115 umbilical cord .b 56 to 637 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA031805   .b 57 to 621 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BC012494 Testis, embryonal carcinoma .b 57 to 2131 1 to 2075 G116R tiling clone, available from MGC, AAA   2075/2075
(100 %)
5 diff
(99.8 %id)
DA042680 bladder .b 57 to 549 2 to 494   capped   493/493
(100 %)
2 diff
(99.6 %id)
DA172944 amygdala .b 57 to 615 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA263403 caudate nucleus .b 57 to 585 2 to 530   capped   529/558
(94 %)
6 diff
(99.0 %id)
DA278275 corpus callosum .b 57 to 596 2 to 543   capped   542/542
(100 %)
8 diff
(98.6 %id)
CR607831 Neuroblastoma Cot 25-normalized .b 57 to 2098 1 to 2042 exact tiling clone,   2042/2042
(100 %)
0 diff
(100 %id)
AL525541 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 57 to 1034 1 to 969 exact fully sequenced,   969/969
(100 %)
13 diff
(98.7 %id)
AL528467 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 57 to 1003 1 to 945 S115X F130X     945/945
(100 %)
6 diff
(99.4 %id)
DA590120 lung .b 57 to 585 2 to 530   capped   529/553
(95 %)
6 diff
(99.0 %id)
DA694573   .b 57 to 557 2 to 502   capped   501/501
(100 %)
1 diff
(99.9 %id)
AU131895   .b 57 to 774 2 to 719 Q31R D121V E228X capped   718/718
(100 %)
3 diff
(99.6 %id)
DA818705   .b 57 to 615 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AU134765 placenta .b 57 to 664 2 to 611   capped   610/610
(100 %)
7 diff
(98.9 %id)
DA965053 stomach .b 57 to 627 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BP344554 synovial membrane .b 57 to 564 1 to 501       501/580
(86 %)
22 diff
(96.3 %id)
BG256337 embryonal carcinoma, cell line, testis .b 58 to 819 1 to 750 G116R H127T K128R E129S F130S ...     750/939
(79 %)
23 diff
(97.6 %id)
BU849073 ovary, teratocarcinoma, cell line .b 58 to 868 1 to 814 T88M     814/850
(95 %)
13 diff
(98.5 %id)
BU931231 ovary, teratocarcinoma, cell line .b 58 to 927 1 to 878 T88M     878/878
(100 %)
21 diff
(97.7 %id)
CN356281 embryonic stem cells, DMSO-treated H9 cellline .b 62 to 684 1 to 623       623/623
(100 %)
4 diff
(99.4 %id)
BX438273 neuroblastoma .b 62 to 1026 1 to 958 L25X D44X A54X A57X A58X ...     958/958
(100 %)
17 diff
(98.3 %id)
BM462455 leiomyosarcoma, uterus .b 62 to 1027 1 to 974 T88M     974/974
(100 %)
29 diff
(97.1 %id)
AL544778 placenta, Placenta Cot 25-normalized .b 69 to 892 1 to 824 T88M     824/824
(100 %)
4 diff
(99.6 %id)
DA659138   .b 70 to 616 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
AL548937 placenta, Placenta Cot 25-normalized .b 73 to 1003 1 to 928       928/928
(100 %)
7 diff
(99.3 %id)
BU556702 ovary, teratocarcinoma, cell line .b 75 to 997 1 to 927       927/946
(97 %)
15 diff
(98.5 %id)
M86934   .b 76 to 2131 1 to 2052       2052/2058
(99 %)
9 diff
(99.6 %id)
EL733112 mixed .b 111 to 742 1 to 632       632/632
(100 %)
4 diff
(99.4 %id)
AL525494 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 939 to 2098 1150 to 1   fully sequenced,   1150/1150
(100 %)
33 diff
(97.2 %id)
AL573421 placenta, Placenta Cot 25-normalized .b 1114 to 2101 986 to 1       986/986
(100 %)
4 diff
(99.6 %id)
AL570465 placenta, Placenta Cot 25-normalized .b 1198 to 2059 865 to 1       865/984
(87 %)
11 diff
(98.9 %id)
AL528435 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 1221 to 2075 866 to 11       856/868
(98 %)
0 diff
(100 %id)
AL570791 placenta, Placenta Cot 25-normalized .b 1239 to 2086 878 to 30       849/878
(96 %)
0 diff
(100 %id)
BX330056 Placenta Cot 25-normalized .b 1306 to 2121 831 to 8       824/873
(94 %)
0 diff
(100 %id)
DB375096 placenta .b 1540 to 2131 586 to 1       586/594
(98 %)
25 diff
(95.8 %id)
AU149009   .b 1570 to 2130 557 to 1       557/557
(100 %)
9 diff
(98.4 %id)
AU153555   .b 1583 to 2131 550 to 1       550/550
(100 %)
14 diff
(97.5 %id)
AU158763 thyroid gland .b 1586 to 2131 542 to 1       542/545
(99 %)
11 diff
(98.0 %id)
AU155624 placenta .b 1646 to 2131 488 to 1       488/488
(100 %)
15 diff
(97.0 %id)
NM_001178135.1   .c -8 to 816 1 to 825 exact RefSeq,   825/825
(100 %)
0 diff
(100 %id)
DA070791 cerebellum .c 47 to 601 2 to 556   tiling clone, capped   555/555
(100 %)
4 diff
(99.3 %id)
AK300740   .c 57 to 816 1 to 760 T88M C198S tiling clone,   760/760
(100 %)
5 diff
(99.4 %id)
DC386136   .c 57 to 642 1 to 586       586/586
(100 %)
4 diff
(99.4 %id)
NM_001178136.1   .d -8 to 2002 1 to 2011 exact RefSeq, AAA   2011/2011
(100 %)
0 diff
(100 %id)
AK300985 small intestine .d 29 to 1404 1 to 1373   tiling clone,   1373/1373
(100 %)
7 diff
(99.5 %id)
DC388687 small intestine .d 29 to 576 1 to 549       549/549
(100 %)
4 diff
(99.3 %id)
N88711   .d 67 to 199 1 to 131       131/131
(100 %)
9 diff
(93.2 %id)
TI_1948238729   .d 212 to 625 999 to 595     Submitted on the opposite strand 405/1225
(33 %)
33 diff
(97.4 %id)
TI_1948238494   .d 219 to 625 1007 to 603     Submitted on the opposite strand 405/1269
(31 %)
45 diff
(96.5 %id)
TI_1948238728   .d 219 to 625 1003 to 599     Submitted on the opposite strand 405/1310
(30 %)
17 diff
(98.8 %id)
DT220545 brain .d 243 to 816 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
T08051   .d 260 to 690 1 to 432       432/437
(98 %)
9 diff
(98.0 %id)
CN356279 embryonic stem cells, cell lines H1, H7, andH9 .d 264 to 949 1 to 687   tiling clone,   687/687
(100 %)
4 diff
(99.5 %id)
CN356282 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 294 to 690 1 to 398       398/400
(99 %)
8 diff
(98.0 %id)
BQ636745 eye, retina .d 313 to 940 1 to 628   tiling clone,   628/628
(100 %)
1 diff
(99.9 %id)
BM824041 Ascites, stomach .d 316 to 763 1 to 448   tiling clone,   448/448
(100 %)
7 diff
(98.5 %id)
F06145 brain, total brain .d 334 to 543 1 to 210       210/210
(100 %)
10 diff
(95.3 %id)
CD673185 eye, Iris .d 367 to 637 1 to 271       271/271
(100 %)
2 diff
(99.3 %id)
BG741999 skin .d 367 to 1159 1 to 791       791/792
(99 %)
8 diff
(99.0 %id)
TI_1948238259   .d 403 to 625 825 to 603     Submitted on the opposite strand 223/1206
(18 %)
5 diff
(99.6 %id)
BI856175 breast, mammary adenocarcinoma, cell line .d 408 to 1104 6 to 703   tiling clone,   698/703
(99 %)
23 diff
(96.8 %id)
TI_57186034   .d 408 to 1104 54 to 751       698/703
(99 %)
23 diff
(96.8 %id)
TI_1948238965   .d 448 to 625 780 to 604     Submitted on the opposite strand 177/1263
(14 %)
0 diff
(100 %id)
F02417 brain, total brain .d 1779 to 2002 224 to 1   tiling clone,   224/224
(100 %)
0 diff
(100 %id)
DA537632 Kidney .e 1 to 542 2 to 543 T39M tiling clone, capped   542/542
(100 %)
4 diff
(99.3 %id)
DB091030 testis .f 1 to 498 10 to 509 A2L R36L Y37L D38* tiling clone, capped   508/508
(100 %)
5 diff
(99.1 %id)
BX340909   .f 93 to 977 1 to 883   tiling clone,   883/931
(94 %)
11 diff
(98.9 %id)
DB051570 testis .g 1 to 556 3 to 559 W43V D44G V45C S47V L48P ... tiling clone, capped   558/559
(99 %)
2 diff
(99.7 %id)
BE019082 muscle, rhabdomyosarcoma .g 197 to 732 48 to 584       537/584
(91 %)
6 diff
(99.0 %id)
BF309360 muscle, rhabdomyosarcoma .g 197 to 833 63 to 701       639/937
(68 %)
17 diff
(98.2 %id)
W87377 liver and spleen .g 222 to 635 1 to 415       415/415
(100 %)
3 diff
(99.3 %id)
FN134865 breast carcinoma .g 327 to 430 1 to 104       104/104
(100 %)
0 diff
(100 %id)
F12287 brain, total brain .g 392 to 701 1 to 310       310/310
(100 %)
0 diff
(100 %id)
BG121428 adenocarcinoma, cell line, Liver .g 392 to 1163 1 to 768       768/943
(81 %)
20 diff
(97.9 %id)
T66234 whole brain .g 417 to 971 1 to 569       569/569
(100 %)
29 diff
(95.0 %id)
AA459338.
matches multiple genes
germinal center B cell .g 432 to 662 1 to 230     also hits gene NUFIP2 230/230
(100 %)
2 diff
(99.2 %id)
F12812 brain, total brain .g 480 to 835 1 to 356       356/356
(100 %)
0 diff
(100 %id)
BG029178 Bone, osteosarcoma, cell line .g 480 to 1122 1 to 643   tiling clone,   643/904
(71 %)
13 diff
(98.6 %id)
T75249 whole brain .g 504 to 916 1 to 415       415/419
(99 %)
7 diff
(98.4 %id)
N42473 melanocyte .g 558 to 839 1 to 289       289/293
(98 %)
13 diff
(95.6 %id)
BE002644 breast_normal .g 605 to 1086 1 to 480       480/480
(100 %)
6 diff
(98.8 %id)
AW802457 uterus .g 609 to 974 1 to 362       362/362
(100 %)
7 diff
(98.1 %id)
BM854113 Ascites, stomach .g 656 to 1205 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DT220385 brain .g 657 to 1314 1 to 659       659/659
(100 %)
3 diff
(99.6 %id)
DT220687 brain .g 657 to 1352 1 to 697       697/697
(100 %)
3 diff
(99.6 %id)
N28708 melanocyte .g 661 to 1055 1 to 397   fully sequenced,   397/397
(100 %)
4 diff
(99.0 %id)
CR616592 Placenta Cot 25-normalized .g 705 to 1676 1 to 972   tiling clone,   972/972
(100 %)
0 diff
(100 %id)
AL549317 placenta, Placenta Cot 25-normalized .g 705 to 1177 1 to 473   fully sequenced,   473/473
(100 %)
0 diff
(100 %id)
BU198941   .g 720 to 1404 1 to 680       680/734
(92 %)
21 diff
(97.2 %id)
TI_149297689   .g 750 to 1706 1013 to 64   AAA   950/1001
(94 %)
17 diff
(98.4 %id)
TI_149286697   .g 776 to 1706 1003 to 91   AAA   913/1122
(81 %)
32 diff
(97.2 %id)
TI_149291404   .g 831 to 1706 942 to 80   AAA   863/940
(91 %)
18 diff
(98.1 %id)
AA278240 germinal center B cell .g 863 to 1324 1 to 462   fully sequenced,   462/462
(100 %)
1 diff
(99.8 %id)
DR977715 brain .g 908 to 1032 1 to 124     Submitted on the opposite strand 124/130
(95 %)
4 diff
(97.0 %id)
TI_45236159   .g 922 to 1652 68 to 788   fully sequenced,   721/788
(91 %)
12 diff
(98.5 %id)
BI517765 pooled colon, kidney, stomach .g 923 to 1652 1 to 720   fully sequenced,   720/720
(100 %)
12 diff
(98.4 %id)
R66667 placenta .g 929 to 1326 15 to 414       400/417
(95 %)
8 diff
(98.1 %id)
R62873 placenta .g 930 to 1359 1 to 450   fully sequenced,   450/450
(100 %)
28 diff
(93.8 %id)
R62647 placenta .g 930 to 1306 1 to 392       392/392
(100 %)
23 diff
(94.2 %id)
BE076984 breast .g 935 to 1517 597 to 15     Submitted on the opposite strand 583/597
(97 %)
0 diff
(100 %id)
BM974026 lung .g 998 to 1706 726 to 19   tiling clone, AAA   708/708
(100 %)
1 diff
(99.9 %id)
EB362033 eye, lens .g 999 to 1705 722 to 16       707/722
(97 %)
0 diff
(100 %id)
TI_149285788   .g 1001 to 1706 791 to 86   AAA   706/706
(100 %)
2 diff
(99.8 %id)
BM982711 lung, Primary Lung Cystic Fibrosis EpithelialCells .g 1014 to 1706 710 to 19   AAA   692/693
(99 %)
2 diff
(99.8 %id)
BP336582 coronary artery .g 1015 to 1597 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BQ014019 Chondrosarcoma, Left Pubic Bone .g 1018 to 1706 706 to 19   AAA   688/699
(98 %)
4 diff
(99.5 %id)
BG572759 placenta .g 1020 to 1657 1 to 637       637/637
(100 %)
2 diff
(99.7 %id)
BM971667 lung .g 1022 to 1706 703 to 19   AAA   685/685
(100 %)
1 diff
(99.9 %id)
AI275097 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 1023 to 1476 1 to 454     Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
N56610 placenta .g 1028 to 1371 1 to 346   fully sequenced,   346/346
(100 %)
3 diff
(99.2 %id)
BM710963 eye, fetal eyes .g 1029 to 1517 1 to 489       489/489
(100 %)
0 diff
(100 %id)
N40797 placenta .g 1041 to 1409 1 to 373   fully sequenced,   373/373
(100 %)
0 diff
(100 %id)
BU619519 Cell Line, Chondrosarcoma .g 1045 to 1704 678 to 19   AAA   660/660
(100 %)
3 diff
(99.6 %id)
N23045 melanocyte .g 1046 to 1706 648 to 1   fully sequenced,   648/648
(100 %)
23 diff
(96.5 %id)
TI_45236160   .g 1051 to 1649 607 to 6   fully sequenced,   602/607
(99 %)
16 diff
(97.4 %id)
BM823757 Ascites, stomach .g 1051 to 1675 1 to 625       625/625
(100 %)
0 diff
(100 %id)
BM972224 lung .g 1058 to 1706 666 to 19   AAA   648/648
(100 %)
1 diff
(99.9 %id)
BU620443 cell lines, Chondrosarcoma .g 1059 to 1706 666 to 19   AAA   648/648
(100 %)
4 diff
(99.4 %id)
N31811 melanocyte .g 1081 to 1706 622 to 1       622/632
(98 %)
20 diff
(96.9 %id)
H48309 liver and spleen .g 1091 to 1425 1 to 341   fully sequenced,   341/341
(100 %)
5 diff
(98.6 %id)
AW992321 breast_normal .g 1117 to 1470 1 to 363       363/363
(100 %)
17 diff
(95.4 %id)
BG622928 placenta .g 1120 to 1704 1 to 583       583/809
(72 %)
5 diff
(99.4 %id)
AL569902 placenta, Placenta Cot 25-normalized .g 1135 to 1674 545 to 1       545/753
(72 %)
1 diff
(99.9 %id)
AL573596 placenta, Placenta Cot 25-normalized .g 1147 to 1632 532 to 46   fully sequenced,   487/532
(91 %)
15 diff
(97.2 %id)
AA151320 uterus .g 1153 to 1332 1 to 182   fully sequenced,   182/182
(100 %)
1 diff
(99.5 %id)
BU622884 cell lines, Enchondroma .g 1160 to 1706 565 to 19   AAA   547/547
(100 %)
1 diff
(99.9 %id)
AW340322 pooled .g 1167 to 1706 541 to 3       539/541
(99 %)
0 diff
(100 %id)
AI684456 pooled .g 1168 to 1706 544 to 6       539/544
(99 %)
0 diff
(100 %id)
BF056123 pooled .g 1169 to 1705 537 to 1       537/537
(100 %)
3 diff
(99.5 %id)
AI911244 pooled .g 1170 to 1706 544 to 8       537/544
(98 %)
0 diff
(100 %id)
W87378 liver and spleen .g 1176 to 1706 532 to 1       532/538
(98 %)
9 diff
(98.4 %id)
BE002935 breast_normal .g 1177 to 1520 348 to 5     Submitted on the opposite strand 344/348
(98 %)
0 diff
(100 %id)
CA311851 Human Lung Epithelial cells, lung .g 1180 to 1706 545 to 19   AAA   527/527
(100 %)
7 diff
(98.7 %id)
BF439668 pooled .g 1181 to 1705 525 to 1       525/525
(100 %)
0 diff
(100 %id)
AA627948 colon, colon tumor RER+ .g 1188 to 1704 515 to 1       515/515
(100 %)
2 diff
(99.7 %id)
CN356280 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 1194 to 1706 12 to 524   AAA   513/524
(97 %)
6 diff
(98.9 %id)
AI927174 Kidney .g 1201 to 1706 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AI204153   .g 1217 to 1706 500 to 12   AAA   489/489
(100 %)
3 diff
(99.4 %id)
BX112318 whole brain .g 1220 to 1706 501 to 15   AAA   487/487
(100 %)
1 diff
(99.8 %id)
AI188494 placenta .g 1220 to 1705 486 to 1       486/486
(100 %)
0 diff
(100 %id)
BG571057 placenta .g 1222 to 1704 1 to 483       483/631
(76 %)
1 diff
(99.9 %id)
TI_149288949   .g 1222 to 1706 571 to 87   AAA   485/794
(61 %)
0 diff
(100 %id)
BM970654 lung .g 1222 to 1706 503 to 19   AAA   485/493
(98 %)
0 diff
(100 %id)
EL948868 eyeball .g 1226 to 1687 23 to 482       460/482
(95 %)
6 diff
(98.8 %id)
AI769151 pooled .g 1227 to 1704 488 to 12   AAA   477/477
(100 %)
5 diff
(99.0 %id)
AA703953   .g 1228 to 1705 477 to 1     Submitted on the opposite strand 477/477
(100 %)
3 diff
(99.4 %id)
BE207826 muscle, rhabdomyosarcoma .g 1228 to 1706 482 to 4       479/482
(99 %)
0 diff
(100 %id)
AA612701 colon, colon tumor RER+ .g 1235 to 1706 478 to 8       471/478
(98 %)
0 diff
(100 %id)
AA635903 normal prostate, Prostate .g 1245 to 1706 462 to 1       462/462
(100 %)
2 diff
(99.6 %id)
AI023687 liver and spleen .g 1253 to 1706 454 to 1       454/454
(100 %)
3 diff
(99.4 %id)
AI923613 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .g 1256 to 1706 452 to 2       451/452
(99 %)
0 diff
(100 %id)
AI923612 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .g 1268 to 1706 443 to 5       439/443
(99 %)
0 diff
(100 %id)
AI225036 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 1277 to 1706 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
AA737013 germinal center B cell .g 1278 to 1706 437 to 11   AAA   427/427
(100 %)
10 diff
(97.7 %id)
AA991212 2 pooled tumors (clear cell type), Kidney .g 1278 to 1706 431 to 5       427/431
(99 %)
0 diff
(100 %id)
BI518193 pooled colon, kidney, stomach .g 1289 to 1649 374 to 6   fully sequenced,   369/374
(98 %)
13 diff
(96.6 %id)
AA278698 germinal center B cell .g 1294 to 1713 421 to 3   fully sequenced,   419/421
(99 %)
7 diff
(98.4 %id)
AA151321 uterus .g 1302 to 1706 411 to 1   fully sequenced,   411/411
(100 %)
7 diff
(98.3 %id)
F22150 pectoral muscle (after mastectomy) .g 1310 to 1678 1 to 372       372/372
(100 %)
5 diff
(98.7 %id)
R62822 placenta .g 1310 to 1706 405 to 2   fully sequenced,   404/405
(99 %)
0 diff
(100 %id)
AA570133 colon .g 1315 to 1706 392 to 1       392/392
(100 %)
2 diff
(99.5 %id)
T66158 whole brain .g 1318 to 1705 400 to 10       391/405
(96 %)
0 diff
(100 %id)
W69325 heart .g 1321 to 1703 1 to 385       385/394
(97 %)
8 diff
(98.0 %id)
AA024583 heart .g 1322 to 1706 389 to 1       389/390
(99 %)
4 diff
(99.0 %id)
AA635794 normal prostate, Prostate .g 1331 to 1706 375 to 1       375/375
(100 %)
29 diff
(92.3 %id)
N29655 placenta .g 1341 to 1713 380 to 1   fully sequenced,   380/380
(100 %)
12 diff
(96.9 %id)
AA743302 germinal center B cell .g 1347 to 1706 374 to 18   AAA   357/357
(100 %)
3 diff
(99.2 %id)
AA857135 adenocarcinoma, colon .g 1347 to 1706 367 to 9       359/367
(97 %)
0 diff
(100 %id)
F36975 pectoral muscle (after mastectomy) .g 1349 to 1706 1 to 358       358/361
(99 %)
2 diff
(99.5 %id)
AI139516 uterus .g 1351 to 1706 384 to 29   AAA   356/357
(99 %)
12 diff
(96.7 %id)
F09912 brain, total brain .g 1355 to 1706 352 to 1       352/352
(100 %)
0 diff
(100 %id)
F10415 brain, total brain .g 1371 to 1706 336 to 1       336/336
(100 %)
1 diff
(99.8 %id)
F30393 pectoral muscle (after mastectomy) .g 1377 to 1497 1 to 121       121/121
(100 %)
0 diff
(100 %id)
R67387 placenta .g 1378 to 1703 333 to 6       328/338
(97 %)
0 diff
(100 %id)
N27385 placenta .g 1379 to 1710 340 to 1   fully sequenced,   340/340
(100 %)
2 diff
(99.5 %id)
AI091555 pooled .g 1380 to 1706 342 to 16   AAA   327/327
(100 %)
1 diff
(99.7 %id)
AA716221 heart .g 1385 to 1703 317 to 1       317/317
(100 %)
4 diff
(98.8 %id)
BF589282 pooled .g 1385 to 1706 337 to 16   AAA   322/322
(100 %)
1 diff
(99.7 %id)
H48217 liver and spleen .g 1395 to 1703 321 to 1   fully sequenced,   321/321
(100 %)
4 diff
(98.8 %id)
FN137903 breast carcinoma .g 1398 to 1454 57 to 1     Submitted on the opposite strand 57/57
(100 %)
1 diff
(98.3 %id)
AI248556 liver and spleen .g 1402 to 1706 305 to 1       305/305
(100 %)
0 diff
(100 %id)
R62599 placenta .g 1410 to 1683 278 to 1       278/279
(99 %)
4 diff
(98.6 %id)
AA721389 germinal center B cell .g 1417 to 1706 309 to 21   AAA   289/289
(100 %)
1 diff
(99.7 %id)
AA897577 pooled .g 1417 to 1706 304 to 16   AAA   289/289
(100 %)
2 diff
(99.4 %id)
AI128341 placenta .g 1425 to 1706 287 to 6       282/531
(53 %)
0 diff
(100 %id)
R38639 whole brain .g 1428 to 1706 288 to 10       279/293
(95 %)
0 diff
(100 %id)
AA854408 parathyroid gland, parathyroid tumor .g 1436 to 1706 286 to 16   AAA   271/271
(100 %)
1 diff
(99.7 %id)
AI142626 pooled .g 1436 to 1706 278 to 8       271/278
(97 %)
0 diff
(100 %id)
BF528019 anaplastic oligodendroglioma with 1p/19qloss, brain .g 1475 to 1706 1 to 231   AAA   231/231
(100 %)
2 diff
(99.2 %id)
AI923584 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .g 1526 to 1706 189 to 9       181/189
(95 %)
0 diff
(100 %id)
AI821155 lung, lung carcinoma .g 1561 to 1706 1 to 146       146/147
(99 %)
4 diff
(97.3 %id)
AI732124 lung, lung carcinoma .g 1581 to 1705 129 to 5       125/129
(96 %)
0 diff
(100 %id)
AA669367 lung, lung carcinoma .g 1584 to 1706 125 to 3       123/125
(98 %)
0 diff
(100 %id)
BG572780 placenta .g 1612 to 1670 830 to 885   AAA   860/919
(93 %)
25 diff
(97.3 %id)
AK307088 alzheimer cortex .h 1 to 1579 12 to 1586 T88M tiling clone,   1577/1586
(99 %)
11 diff
(99.4 %id)
DC311821 alzheimer cortex .h 1 to 614 12 to 625 T88M     616/625
(98 %)
8 diff
(98.8 %id)
BE885468 leiomyosarcoma, uterus .i 1 to 658 1 to 668 T51M tiling clone,   668/801
(83 %)
22 diff
(97.3 %id)
DB328752 placenta Gene HDHD1, variant not shown              
DA851499 placenta Gene HDHD1, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C