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Gene HDAC8TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
254 supporting clones for gene HDAC8 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_018486.2   .a 1 to 2013 1 to 2013 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 2013/2013
(100 %)
0 diff
(100 %id)
BP229332 brain .a 25 to 636 1 to 607   tiling clone,   607/607
(100 %)
1 diff
(99.9 %id)
DA696792   .a 55 to 631 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
BP241968 Liver .a 56 to 637 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP225620   .a 245 to 780 1 to 537       537/581
(92 %)
5 diff
(99.2 %id)
CD703918 normal nasopharynx .a 246 to 736 18 to 510       493/510
(96 %)
6 diff
(98.9 %id)
CD705164 normal nasopharynx .a 246 to 859 7 to 619       613/619
(99 %)
11 diff
(98.3 %id)
DR005867 Prostate .a 246 to 935 1 to 689       689/689
(100 %)
8 diff
(98.9 %id)
BM927283 brain .a 247 to 1202 1 to 970       970/1078
(89 %)
29 diff
(97.4 %id)
DB465862 hippocampus .a 255 to 676 1 to 422       422/422
(100 %)
3 diff
(99.3 %id)
DA251578 caudate nucleus .a 257 to 829 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BG477511 melanotic melanoma, skin .a 259 to 787 1 to 531       531/818
(64 %)
10 diff
(98.8 %id)
BG940642 blood .a 260 to 590 1 to 331       331/331
(100 %)
1 diff
(99.7 %id)
BP366498 thymus .a 260 to 825 1 to 565       565/565
(100 %)
8 diff
(98.6 %id)
DA066315 cerebellum .a 262 to 827 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA965106 stomach .a 262 to 753 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
TI_57166195   .a 264 to 1069 28 to 840       813/840
(96 %)
20 diff
(97.7 %id)
DA310759 hippocampus .a 265 to 824 2 to 561   capped   560/564
(99 %)
1 diff
(99.9 %id)
DA341697 substantia nigra .a 265 to 857 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
BG826359 muscle, rhabdomyosarcoma .a 269 to 958 1 to 693       693/693
(100 %)
9 diff
(98.8 %id)
BI835681 pooled pancreas and spleen .a 269 to 1069 1 to 808       808/808
(100 %)
14 diff
(98.3 %id)
DA369135 subthalamic nucleus .a 270 to 741 2 to 473   capped   472/472
(100 %)
0 diff
(100 %id)
BX449212 adult brain, brain .a 270 to 1246 1 to 970       970/970
(100 %)
8 diff
(99.2 %id)
BG290743 bladder, transitional cell papilloma, cell line .a 270 to 955 1 to 689       689/690
(99 %)
7 diff
(99.0 %id)
BG251836 adenocarcinoma, cell line, Liver .a 271 to 893 1 to 622       622/622
(100 %)
2 diff
(99.7 %id)
CT002933 T-Lymphocytes .a 271 to 886 1 to 616       616/617
(99 %)
1 diff
(99.9 %id)
BQ670006 epidermoid carcinoma, cell line, salivary gland .a 276 to 1123 1 to 852       852/854
(99 %)
6 diff
(99.3 %id)
DA368243 subthalamic nucleus .a 277 to 848 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BE386095 melanotic melanoma, skin .a 279 to 963 1 to 682       682/683
(99 %)
7 diff
(99.0 %id)
BP245748 Kidney .a 281 to 838 25 to 582       558/582
(95 %)
7 diff
(98.8 %id)
DW418861 Liver .a 284 to 684 14 to 414       401/414
(96 %)
6 diff
(98.6 %id)
BP251562 hippocampus .a 284 to 867 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
AA376331 lung .a 285 to 601 1 to 321       321/323
(99 %)
8 diff
(97.6 %id)
AL553681 placenta, Placenta Cot 25-normalized .a 285 to 1191 1 to 905       905/905
(100 %)
9 diff
(99.1 %id)
AL547216 placenta, Placenta Cot 25-normalized .a 286 to 1256 1 to 968       968/974
(99 %)
7 diff
(99.3 %id)
BG770967 adenocarcinoma, Prostate .a 286 to 894 1 to 607       607/826
(73 %)
5 diff
(99.4 %id)
BG699154 brain, hippocampus .a 288 to 990 7 to 709       703/709
(99 %)
13 diff
(98.2 %id)
DA849851 placenta .a 288 to 853 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA973486 synovial membrane tissue from rheumatioidarthritis .a 289 to 800 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
DA709682   .a 290 to 846 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AA336308 endometrium .a 292 to 656 1 to 368       368/368
(100 %)
11 diff
(97.1 %id)
CX758408 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 292 to 992 1 to 695     Submitted on the opposite strand 699/844
(82 %)
13 diff
(98.5 %id)
BX343431 Neuroblastoma Cot 25-normalized .a 294 to 1243 1 to 941       941/944
(99 %)
13 diff
(98.7 %id)
AL528515 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 294 to 1262 1 to 962       962/1040
(92 %)
12 diff
(98.9 %id)
CF265146 Brain glioblastoma .a 294 to 1168 1 to 876       876/876
(100 %)
12 diff
(98.7 %id)
BG419896 Kidney, renal cell adenocarcinoma .a 295 to 886 1 to 591       591/591
(100 %)
5 diff
(99.2 %id)
BQ061945 lymph, lymphoma, cell line .a 295 to 1208 1 to 923       923/979
(94 %)
20 diff
(98.0 %id)
BQ063590 lymph, lymphoma, cell line .a 295 to 1078 1 to 787       787/1066
(73 %)
14 diff
(98.7 %id)
BQ642142 lymph, lymphoma, cell line .a 295 to 1080 1 to 797       797/977
(81 %)
21 diff
(97.9 %id)
AL556560 placenta .a 296 to 1062 34 to 801       768/817
(94 %)
22 diff
(97.4 %id)
BQ066138 lymph, lymphoma, cell line .a 296 to 1195 1 to 915       913/993
(91 %)
22 diff
(97.8 %id)
BP870830 embryonal kidney .a 297 to 586 1 to 289       289/289
(100 %)
2 diff
(99.4 %id)
BQ069573 brain, neuroblastoma, cell line .a 298 to 1043 1 to 747       747/1109
(67 %)
22 diff
(98.1 %id)
CN336000 embryonic stem cells, DMSO-treated H9 cellline .a 299 to 1053 1 to 755       755/755
(100 %)
4 diff
(99.5 %id)
CX756531 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 299 to 781 1 to 483     Submitted on the opposite strand 483/676
(71 %)
10 diff
(98.6 %id)
AJ277724   .a 301 to 2013 1 to 1713   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 1713/1713
(100 %)
1 diff
(100.0 %id)
AL519723 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 301 to 1183 34 to 917       884/917
(96 %)
6 diff
(99.4 %id)
AL561596 B cells from Burkitt lymphoma .a 301 to 1254 34 to 985       952/992
(95 %)
12 diff
(98.8 %id)
BI820305 pooled brain, lung, testis .a 301 to 1081 1 to 788       788/946
(83 %)
18 diff
(98.1 %id)
BM473143 leiomyosarcoma, uterus .a 301 to 1161 1 to 873       873/1048
(83 %)
24 diff
(97.8 %id)
TI_57199484   .a 301 to 1081 37 to 824       788/982
(80 %)
24 diff
(97.6 %id)
BE898767 adenocarcinoma cell line, ovary .a 302 to 1075 1 to 771       771/1159
(66 %)
11 diff
(99.1 %id)
TI_57146110   .a 302 to 1067 64 to 833       770/833
(92 %)
21 diff
(97.5 %id)
BM560195 brain, medulla .a 304 to 1253 20 to 980       959/1082
(88 %)
31 diff
(97.2 %id)
DA374655 thalamus .a 305 to 850 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA693285   .a 305 to 856 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DA921826 small intestine .a 305 to 867 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BG829001 muscle, rhabdomyosarcoma .a 307 to 787 1 to 481       481/710
(67 %)
6 diff
(99.2 %id)
BC011800 Muscle, rhabdomyosarcoma .a 308 to 2014 10 to 1716   tiling clone, AAA   1707/2921
(58 %)
1 diff
(100.0 %id)
BC023642 Muscle, rhabdomyosarcoma .a 308 to 2014 10 to 1716   AAA   1707/2921
(58 %)
1 diff
(100.0 %id)
BU540619 large cell carcinoma, lung .a 308 to 1123 1 to 819       819/900
(91 %)
13 diff
(98.6 %id)
BI758817 pooled colon, kidney, stomach .a 309 to 1067 1 to 763       763/763
(100 %)
15 diff
(98.1 %id)
BC050433 Lung, Spleen, fetal, pooled .a 310 to 2013 1 to 1704   available from MGC, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 1704/1704
(100 %)
2 diff
(99.9 %id)
BQ072541 pooled lung and spleen .a 311 to 1326 1 to 1019       1019/1020
(99 %)
22 diff
(97.9 %id)
DA692761   .a 313 to 880 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
AF230097   .a 317 to 1941 30 to 1654       1625/1654
(98 %)
7 diff
(99.6 %id)
AL557219 T cells (Jurkat cell line), T cells from T cell leukemia .a 317 to 1259 1 to 933       933/933
(100 %)
15 diff
(98.4 %id)
AL517574 brain, neuroblastoma, neuroblastoma cells .a 320 to 1250 1 to 921       921/921
(100 %)
12 diff
(98.7 %id)
BE407650 choriocarcinoma, placenta .a 320 to 888 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BG763505 melanotic melanoma, high MDR (cell line), skin .a 320 to 1079 1 to 772       770/862
(89 %)
24 diff
(97.3 %id)
BG764252 melanotic melanoma, high MDR (cell line), skin .a 320 to 1033 1 to 716       716/716
(100 %)
3 diff
(99.6 %id)
BX490413   .a 321 to 922 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
AA311553   .a 327 to 700 24 to 397       374/397
(94 %)
8 diff
(98.0 %id)
BE271479 adenocarcinoma cell line, ovary .a 329 to 1003 1 to 669       669/714
(93 %)
14 diff
(98.1 %id)
BE745295 adenocarcinoma cell line, ovary .a 329 to 1079 1 to 745       745/985
(75 %)
9 diff
(99.1 %id)
BE747013 adenocarcinoma cell line, ovary .a 329 to 1240 1 to 911       911/1021
(89 %)
40 diff
(96.1 %id)
AF245664   .a 334 to 2014 1 to 1682       1682/1682
(100 %)
3 diff
(99.9 %id)
BE900519 choriocarcinoma, placenta .a 336 to 1056 1 to 719       719/719
(100 %)
5 diff
(99.4 %id)
EL734533 mixed .a 343 to 946 1 to 604       604/604
(100 %)
2 diff
(99.7 %id)
BE395333 endometrium, adenocarcinoma cell line, uterus .a 343 to 942 1 to 601       601/602
(99 %)
2 diff
(99.7 %id)
TI_1948211974   .a 343 to 1342 124 to 1110   fully sequenced,   987/1110
(88 %)
39 diff
(96.5 %id)
TI_1948212253   .a 343 to 1008 130 to 794   fully sequenced,   665/794
(83 %)
7 diff
(99.2 %id)
TI_1948212392   .a 343 to 947 132 to 736   fully sequenced,   605/736
(82 %)
8 diff
(99.0 %id)
F08346 brain, total brain .a 415 to 712 1 to 298       298/298
(100 %)
0 diff
(100 %id)
AA313233 colon .a 429 to 786 8 to 364       357/400
(89 %)
14 diff
(96.5 %id)
AW961180   .a 430 to 1137 1 to 709       709/711
(99 %)
18 diff
(97.5 %id)
CV412445 colon .a 502 to 883 7 to 391       389/391
(99 %)
13 diff
(96.7 %id)
AW269297 Kidney .a 506 to 779 276 to 3       274/337
(81 %)
15 diff
(95.6 %id)
BQ960716 sciatic nerve .a 527 to 1347 1 to 821       821/914
(89 %)
1 diff
(99.9 %id)
BI025193 marrow .a 533 to 878 349 to 3       347/349
(99 %)
1 diff
(99.8 %id)
AI159768 uterus .a 550 to 1046 497 to 1       497/497
(100 %)
1 diff
(99.8 %id)
BM908477 astrocytoma grade IV, cell line, brain .a 656 to 1344 1 to 693       691/1094
(63 %)
29 diff
(97.4 %id)
TI_1948211975   .a 862 to 1454 736 to 144   fully sequenced,   593/736
(80 %)
0 diff
(100 %id)
TI_1948212393   .a 917 to 1454 683 to 146   fully sequenced,   538/683
(78 %)
0 diff
(100 %id)
TI_1948212254   .a 978 to 1454 620 to 144   fully sequenced,   477/620
(76 %)
0 diff
(100 %id)
AL517573 brain, neuroblastoma, neuroblastoma cells .a 1346 to 2001 657 to 1       657/657
(100 %)
13 diff
(98.1 %id)
AL519722 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 1346 to 1985 641 to 1       641/641
(100 %)
18 diff
(97.2 %id)
BX343430 Neuroblastoma Cot 25-normalized .a 1346 to 1973 632 to 5       628/632
(99 %)
3 diff
(99.6 %id)
AL563162 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1346 to 1967 623 to 1       623/623
(100 %)
4 diff
(99.4 %id)
AL572248 placenta, Placenta Cot 25-normalized .a 1346 to 1959 616 to 3       614/616
(99 %)
0 diff
(100 %id)
AL576605 placenta, Placenta Cot 25-normalized .a 1346 to 1992 654 to 1       654/654
(100 %)
27 diff
(95.9 %id)
AL578792 placenta .a 1346 to 1984 646 to 1       646/646
(100 %)
10 diff
(98.5 %id)
AL582761 B cells from Burkitt lymphoma .a 1346 to 1952 607 to 1       607/607
(100 %)
0 diff
(100 %id)
BX449211 adult brain, brain .a 1346 to 1983 637 to 1       637/637
(100 %)
2 diff
(99.7 %id)
BQ331804 lung_tumor .a 1452 to 1735 34 to 317       284/335
(84 %)
3 diff
(99.2 %id)
AL579299 T cells (Jurkat cell line), T cells from T cell leukemia .a 1452 to 1992 544 to 4       541/544
(99 %)
0 diff
(100 %id)
TI_154034552   .a 1452 to 2013 640 to 80   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 561/779
(72 %)
5 diff
(99.4 %id)
AI972846 Prostate .a 1454 to 2013 560 to 1       560/560
(100 %)
1 diff
(99.9 %id)
BQ001852 Fibrosarcoma .a 1460 to 2013 571 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 553/553
(100 %)
3 diff
(99.5 %id)
AV726510 hypothalamus .a 1468 to 2013 1 to 546   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 546/546
(100 %)
3 diff
(99.5 %id)
CA443631 lung, Metastatic Chondrosarcoma .a 1477 to 2013 555 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 537/537
(100 %)
3 diff
(99.5 %id)
CN391293 embryonic stem cells, DMSO-treated H9 cellline .a 1479 to 1847 1 to 369       369/370
(99 %)
1 diff
(99.8 %id)
CB114398 Liver .a 1482 to 2013 567 to 36   AAA Submitted on the opposite strand 532/532
(100 %)
4 diff
(99.3 %id)
AI478275 Kidney .a 1499 to 2013 515 to 1       515/515
(100 %)
6 diff
(98.9 %id)
BE326619 Kidney .a 1500 to 2013 514 to 1       514/514
(100 %)
1 diff
(99.9 %id)
BE856936 pooled .a 1507 to 2014 515 to 8       508/515
(98 %)
0 diff
(100 %id)
BF513419   .a 1524 to 2013 507 to 18   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 490/490
(100 %)
1 diff
(99.8 %id)
AI803366   .a 1569 to 2014 451 to 6       446/451
(98 %)
0 diff
(100 %id)
AI916369 Kidney .a 1569 to 2013 457 to 12   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 446/446
(100 %)
4 diff
(99.2 %id)
AI051288   .a 1570 to 2013 462 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 444/444
(100 %)
4 diff
(99.1 %id)
AI632073 pooled germ cell tumors .a 1570 to 2013 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
BF477595 Prostate .a 1570 to 2013 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
AA470774 colon .a 1582 to 2013 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
BF058960 fibrotheoma, ovary .a 1585 to 2014 437 to 8       430/437
(98 %)
0 diff
(100 %id)
AI478805 Kidney .a 1589 to 2013 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
DB532763 hippocampus .a 1596 to 2012 10 to 432     Submitted on the opposite strand 423/432
(97 %)
6 diff
(98.7 %id)
AW664725 colon, moderately-differentiated adenocarcinoma .a 1600 to 2014 415 to 1       415/415
(100 %)
1 diff
(99.8 %id)
AI992329 pooled germ cell tumors .a 1608 to 2013 406 to 1       406/406
(100 %)
2 diff
(99.6 %id)
AW386965 stomach .a 1621 to 1848 6 to 231       226/231
(97 %)
7 diff
(97.0 %id)
FN142899 breast carcinoma .a 1630 to 1704 1 to 75       75/76
(98 %)
1 diff
(98.7 %id)
BP389924 pancreatic islet .a 1638 to 2014 1 to 378     Submitted on the opposite strand 378/382
(98 %)
3 diff
(99.3 %id)
AI912896 Kidney .a 1647 to 2014 375 to 8       368/375
(98 %)
0 diff
(100 %id)
FN053899 breast carcinoma .a 1662 to 1718 1 to 57       57/57
(100 %)
0 diff
(100 %id)
AW873085 adrenal gland, neuroblastoma .a 1674 to 2014 344 to 4       341/344
(99 %)
0 diff
(100 %id)
AI767074 2 pooled tumors (clear cell type), Kidney .a 1677 to 2013 352 to 16   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 337/337
(100 %)
2 diff
(99.5 %id)
Z21709   .a 1704 to 2013 356 to 51   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 306/307
(99 %)
15 diff
(95.2 %id)
AW664717 colon, moderately-differentiated adenocarcinoma .a 1730 to 2014 285 to 1       285/285
(100 %)
1 diff
(99.7 %id)
AA514383 colon .a 1804 to 2013 236 to 27   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 210/210
(100 %)
1 diff
(99.6 %id)
Z41351 brain, total brain .a 1820 to 2013 194 to 1       194/194
(100 %)
2 diff
(99.0 %id)
BE792074 lung, small cell carcinoma .b 1 to 792 1 to 790   tiling clone,   790/836
(94 %)
7 diff
(99.2 %id)
BE799989 lung, small cell carcinoma .b 23 to 857 1 to 832       832/1052
(79 %)
27 diff
(97.5 %id)
BY993888   .b 694 to 1345 29 to 680   tiling clone,   652/680
(95 %)
6 diff
(99.2 %id)
NM_001166418.1   .c 1 to 1740 1 to 1740 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 1740/1740
(100 %)
0 diff
(100 %id)
AK296641 colon .c 51 to 1181 1 to 1131   tiling clone,   1131/1170
(96 %)
1 diff
(100.0 %id)
DC345104 colon .c 51 to 613 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
BF982910 duodenal adenocarcinoma, cell line, small intestine .c 267 to 1052 7 to 783       777/814
(95 %)
26 diff
(96.9 %id)
AA374806 lung .c 286 to 500 1 to 215       215/216
(99 %)
5 diff
(97.7 %id)
DC322561 brain .c 287 to 868 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BG575585 breast, mammary adenocarcinoma, cell line .c 507 to 1074 42 to 611       573/932
(61 %)
9 diff
(99.1 %id)
BE154341 head_neck .c 628 to 777 14 to 163       150/166
(90 %)
12 diff
(92.8 %id)
BG771237 adenocarcinoma, Prostate .c 638 to 1257 1 to 621       621/621
(100 %)
1 diff
(99.9 %id)
BE546800 cervical carcinoma cell line, cervix .c 732 to 1426 1 to 690       690/691
(99 %)
15 diff
(97.9 %id)
AW577531 breast .c 770 to 1074 507 to 203       305/507
(60 %)
0 diff
(100 %id)
BF331507 breast .c 801 to 961 29 to 200       172/200
(86 %)
10 diff
(95.0 %id)
BI041105 nervous_tumor .c 804 to 1325 18 to 539       520/539
(96 %)
8 diff
(98.6 %id)
BI039197 nervous_tumor .c 813 to 1335 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
BI040988 nervous_tumor .c 813 to 1342 545 to 16       530/545
(97 %)
1 diff
(99.9 %id)
BI039428 nervous_tumor .c 870 to 1342 494 to 22       473/494
(95 %)
2 diff
(99.6 %id)
FN169179 breast carcinoma .c 913 to 1012 100 to 1     Submitted on the opposite strand 100/100
(100 %)
0 diff
(100 %id)
BI040991 nervous_tumor .c 967 to 1342 156 to 530       375/536
(69 %)
11 diff
(98.0 %id)
TI_154116854   .c 1076 to 1740 765 to 102   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 664/1002
(66 %)
2 diff
(99.9 %id)
EC503130 Prostate .c 1121 to 1218 98 to 1       98/98
(100 %)
0 diff
(100 %id)
CA449723 Chondrosarcoma, Left Pelvis .c 1126 to 1740 633 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 615/615
(100 %)
1 diff
(99.9 %id)
BE710016 head_neck .c 1142 to 1545 1 to 403       403/403
(100 %)
6 diff
(98.6 %id)
DC352390 brain .d 1 to 573 1 to 573   tiling clone,   573/573
(100 %)
2 diff
(99.7 %id)
NM_001166419.1   .d 2 to 2393 1 to 2392 exact RefSeq, AAA   2392/2392
(100 %)
0 diff
(100 %id)
AK074326   .d 57 to 2393 1 to 2337 exact tiling clone, available from FLJ, AAA   2337/2337
(100 %)
0 diff
(100 %id)
BX340776   .d 291 to 1214 21 to 943       923/943
(97 %)
9 diff
(99.1 %id)
BX344451   .d 291 to 1157 1 to 866       866/866
(100 %)
1 diff
(99.9 %id)
BX403971 neuroblastoma .d 295 to 1349 1 to 1043       1043/1043
(100 %)
30 diff
(97.2 %id)
AL547627 placenta, Placenta Cot 25-normalized .d 297 to 1354 33 to 1083   fully sequenced,   1051/1083
(97 %)
8 diff
(99.3 %id)
AK300895 small intestine .d 305 to 1837 1 to 1533       1533/1533
(100 %)
2 diff
(99.9 %id)
BG614612 embryonal carcinoma, testis .d 384 to 1154 1 to 770       770/770
(100 %)
17 diff
(97.8 %id)
BG528930 adenocarcinoma, Prostate .d 835 to 1547 1 to 720       720/761
(94 %)
20 diff
(97.4 %id)
BE154312 head_neck .d 906 to 1465 9 to 573       565/574
(98 %)
17 diff
(97.1 %id)
AL547605 placenta, Placenta Cot 25-normalized .d 1324 to 2361 1026 to 1   fully sequenced,   1026/1026
(100 %)
11 diff
(99.0 %id)
DC426056 brain .d 1843 to 2393 551 to 1       551/551
(100 %)
5 diff
(99.1 %id)
AK294903 brain .e 1 to 1222 2 to 1223 exact tiling clone,   1223/1223
(100 %)
0 diff
(100 %id)
BG422835 Kidney, renal cell adenocarcinoma .f 1 to 721 3 to 718 F169L E170S R171V I172F L173S ... tiling clone,   718/909
(78 %)
16 diff
(98.3 %id)
BP264948 muscle .g 1 to 800 1 to 809 A150V R199X D210G L211S H212A tiling clone,   809/992
(81 %)
25 diff
(97.5 %id)
CR611822 Placenta Cot 25-normalized .h 1 to 2089 5 to 2093 exact tiling clone,   2093/2093
(100 %)
0 diff
(100 %id)
BG979781 colon_normal .h 792 to 1183 8 to 399       392/477
(82 %)
11 diff
(97.7 %id)
CN336002 embryonic stem cells, DMSO-treated H9 cellline .h 812 to 1454 1 to 643       643/645
(99 %)
3 diff
(99.6 %id)
AI940743 stomach .h 1102 to 1303 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
AI940758 stomach .h 1102 to 1303 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
BG120118 adenocarcinoma, cell line, Liver .h 1144 to 1865 1 to 717       717/924
(77 %)
18 diff
(98.1 %id)
BX344450   .h 1185 to 2094 911 to 1       911/911
(100 %)
1 diff
(99.9 %id)
BX453996 neuroblastoma .h 1362 to 2118 765 to 1       765/958
(79 %)
44 diff
(95.5 %id)
BU633026 cell lines, Chondrosarcoma .h 1394 to 2121 746 to 19   AAA   728/728
(100 %)
1 diff
(99.9 %id)
CB162998 Liver .h 1538 to 1739 1 to 204       204/204
(100 %)
2 diff
(99.1 %id)
BX340775   .h 1547 to 2084 535 to 1       535/539
(99 %)
15 diff
(97.3 %id)
BQ632501 Pancreas, Purified pancreatic islet .h 1579 to 2122 550 to 7       544/550
(98 %)
0 diff
(100 %id)
AA662745 normal prostate, Prostate .h 1688 to 2122 437 to 3       435/437
(99 %)
0 diff
(100 %id)
AW972124   .h 1699 to 2120 422 to 1     Submitted on the opposite strand 422/509
(82 %)
1 diff
(99.9 %id)
AI161362 heart .h 1736 to 2121 396 to 11   AAA   386/386
(100 %)
0 diff
(100 %id)
AA480311 colon .h 1759 to 2121 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
BG573441 placenta .h 1907 to 2260 1 to 354   tiling clone, AAA   354/354
(100 %)
0 diff
(100 %id)
NM_001166422.1   .i 1 to 993 1 to 993 exact RefSeq, AAA   993/993
(100 %)
0 diff
(100 %id)
AF212246 pheochromocytoma .i 285 to 993 1 to 710   tiling clone, AAA   710/710
(100 %)
5 diff
(99.3 %id)
AV734781 pheochromocytoma .i 295 to 965 1 to 664       664/667
(99 %)
21 diff
(96.9 %id)
AI916593 Kidney .i 460 to 991 537 to 6   tiling clone,   532/537
(99 %)
0 diff
(100 %id)
AI651236 pooled germ cell tumors .i 535 to 993 500 to 42   tiling clone, AAA   459/459
(100 %)
9 diff
(98.1 %id)
AI968341 pooled germ cell tumors .i 535 to 993 500 to 42   AAA   459/459
(100 %)
14 diff
(97.0 %id)
AI650685 pooled germ cell tumors .i 626 to 993 409 to 42   AAA   368/369
(99 %)
17 diff
(95.4 %id)
NM_001166420.1   .j 1 to 1085 1 to 1085 exact RefSeq, AAA   1085/1085
(100 %)
0 diff
(100 %id)
BQ189619 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 251 to 537 1 to 287   tiling clone, fully sequenced,   287/287
(100 %)
0 diff
(100 %id)
TI_151733952   .j 333 to 1085 828 to 82   tiling clone, AAA   747/921
(81 %)
11 diff
(98.9 %id)
CK300456 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 476 to 1085 628 to 19   fully sequenced, AAA   610/610
(100 %)
0 diff
(100 %id)
BF508184   .j 648 to 1081 449 to 16   AAA   434/434
(100 %)
4 diff
(99.1 %id)
BF514915   .j 650 to 1081 447 to 16   AAA   432/432
(100 %)
0 diff
(100 %id)
AW602204 breast .j 664 to 796 133 to 1       133/133
(100 %)
3 diff
(97.8 %id)
AW602277 breast .j 754 to 928 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
AK298767 ovary .k 1 to 1323 1 to 1323 exact tiling clone,   1323/1323
(100 %)
1 diff
(100.0 %id)
DC365455 ovary .k 1 to 562 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC365457 ovary .k 1 to 563 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
NM_001166448.1   .l 1 to 2041 1 to 2041 exact RefSeq, AAA   2041/2041
(100 %)
0 diff
(100 %id)
BQ632790 Pancreas, Purified pancreatic islet .l 289 to 850 1 to 562   tiling clone,   562/562
(100 %)
3 diff
(99.5 %id)
CK902212 Pancreas, Purified pancreatic islet .l 333 to 923 1 to 591     Submitted on the opposite strand 591/591
(100 %)
0 diff
(100 %id)
BI259964 cervical carcinoma cell line, cervix .l 620 to 1150 1 to 537       537/811
(66 %)
21 diff
(97.5 %id)
BX097048 liver and spleen .l 639 to 1347 1 to 709   tiling clone,   709/709
(100 %)
1 diff
(99.9 %id)
T99283 liver and spleen .l 640 to 1021 1 to 399       399/420
(95 %)
8 diff
(98.1 %id)
BQ351173 head_neck .l 681 to 1356 13 to 680   tiling clone,   668/706
(94 %)
21 diff
(97.1 %id)
T99239 liver and spleen .l 1717 to 2031 331 to 1   tiling clone,   331/367
(90 %)
15 diff
(96.0 %id)
CN336001 embryonic stem cells, cell lines H1, H7, andH9 .m 1 to 561 1 to 561 exact tiling clone,   561/561
(100 %)
1 diff
(99.9 %id)
TI_57237726   .n 1 to 684 84 to 771 exact     688/949
(72 %)
16 diff
(98.4 %id)
BI909672 leukocyte .n 5 to 684 1 to 684 exact tiling clone,   684/862
(79 %)
12 diff
(98.7 %id)
BM824327 Ascites, stomach .o 1 to 552 1 to 551 P64Q A65P T66L E67K I69Y ... tiling clone,   551/551
(100 %)
2 diff
(99.7 %id)
AY429539   .p 1 to 687 1 to 687 exact tiling clone,   687/687
(100 %)
0 diff
(100 %id)
DA362860 subthalamic nucleus .p 97 to 659 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
BE257388 eye, retinoblastoma .q 1 to 592 1 to 590 C114X L126C R127D R128G K129N ... tiling clone,   590/590
(100 %)
2 diff
(99.7 %id)
BG942723 blood .r 1 to 576 623 to 48 G101E tiling clone, AAA   576/576
(100 %)
1 diff
(99.9 %id)
BG924336 cartilage .s 1 to 329 89 to 417 exact tiling clone,   329/349
(94 %)
11 diff
(96.9 %id)
DW416406 Liver .t 1 to 292 18 to 309 exact     296/309
(95 %)
7 diff
(97.8 %id)
DW467246 Liver .t 1 to 330 18 to 347 exact tiling clone,   334/347
(96 %)
7 diff
(98.0 %id)
DA207940 brain .u-u 1 to 563 2 to 563 R5L E6* tiling clone, to resequence, capped   562/562
(100 %)
13 diff
(97.7 %id)
AI053481 ovary, papillary serous carcinoma .u-u 30 to 178 168 to 20 exact tiling clone, AAA   149/163
(91 %)
1 diff
(99.4 %id)
AI792455 ovary, papillary serous carcinoma .u-u 30 to 178 201 to 53 exact AAA Submitted on the opposite strand 149/159
(93 %)
4 diff
(97.5 %id)
BQ721727 dorsal root ganglia .u-u 592 to 1518 1 to 929   tiling clone,   929/930
(99 %)
25 diff
(97.4 %id)
DA561357 heart .u-u 760 to 1326 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BE901592 choriocarcinoma, placenta .u-u 781 to 1579 1 to 800       800/929
(86 %)
28 diff
(97.0 %id)
BM725268 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .u-u 1200 to 1704 1 to 506   tiling clone, AAA   506/506
(100 %)
1 diff
(99.9 %id)
BM726214 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .u-u 1200 to 1704 1 to 506   AAA   506/506
(100 %)
1 diff
(99.9 %id)
DA518345 brain .u-u 1251 to 1807 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
AA251229 germinal center B cell .u-u 1566 to 1948 1 to 384       384/388
(98 %)
5 diff
(98.8 %id)
AI888645 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .u-u 1620 to 2034 415 to 1   tiling clone,   415/415
(100 %)
3 diff
(99.3 %id)
DB304268 brain .u-u 1786 to 2319 534 to 1   tiling clone, to resequence,   534/534
(100 %)
1 diff
(99.9 %id)
DB318748 heart .u-u 1848 to 2319 472 to 1       472/476
(99 %)
4 diff
(99.2 %id)
AA683092 schizophrenic brain S-11 frontal lobe .u-u 1937 to 2057 1 to 120     Submitted on the opposite strand 120/120
(100 %)
1 diff
(99.2 %id)
DB317030 brain .u-u 3198 to 3751 554 to 1   tiling clone,   554/554
(100 %)
1 diff
(99.9 %id)
AA251230 germinal center B cell .u-u 3410 to 3752 348 to 6   tiling clone,   343/348
(98 %)
0 diff
(100 %id)
AK054936 cerebellum .va-u 1 to 2312 2 to 2313 exact tiling clone, available from FLJ,   2313/2313
(100 %)
0 diff
(100 %id)
DA059781 cerebellum .va-u 1 to 568 2 to 569 exact capped   568/568
(100 %)
0 diff
(100 %id)
BF378763 uterus .va-u 565 to 873 1 to 309       309/325
(95 %)
3 diff
(99.1 %id)
BQ377495 uterus .va-u 565 to 873 1 to 309       309/325
(95 %)
3 diff
(99.1 %id)
DB296903 cerebellum .va-u 1757 to 2312 557 to 1       557/559
(99 %)
1 diff
(99.9 %id)
AK057569 thymus .vb-u 1 to 1980 2 to 1981 exact tiling clone, available from FLJ,   1981/1981
(100 %)
0 diff
(100 %id)
DB101048 thymus .vb-u 1 to 528 2 to 529 exact capped   528/528
(100 %)
0 diff
(100 %id)
BF336144 colon .vb-u 627 to 1084 9 to 464       456/464
(98 %)
6 diff
(98.8 %id)
CV420689 prostate_normal .vb-u 796 to 1239 452 to 2     Submitted on the opposite strand 451/452
(99 %)
0 diff
(100 %id)
BF760229 colon .vb-u 1111 to 1529 425 to 7     Submitted on the opposite strand 419/425
(98 %)
0 diff
(100 %id)
BE092312 breast .vb-u 1212 to 1562 358 to 8     Submitted on the opposite strand 351/358
(98 %)
0 diff
(100 %id)
DB158372 thymus .vb-u 1464 to 1979 2 to 519   capped   518/518
(100 %)
2 diff
(99.7 %id)
DB342239 thymus .vb-u 1475 to 1980 506 to 1       506/506
(100 %)
0 diff
(100 %id)
TI_154117562   .vc 1 to 798 901 to 114 T28X tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 788/891
(88 %)
21 diff
(97.7 %id)
BX495170 Liver .vd-u 1 to 547 1 to 548 exact tiling clone,   548/548
(100 %)
8 diff
(98.6 %id)
DB298028 cerebellum Gene HDAC8, variant not shown         This clone was ignored    
DA084040 cerebellum Gene HDAC8, variant not shown       capped This clone was ignored    
TI_1948212109   Gene HDAC8, variant not shown       fully sequenced, This clone was ignored    
TI_1948212110   Gene HDAC8, variant not shown       fully sequenced, This clone was ignored    
CA449610 Chondrosarcoma, Left Pelvis Gene HDAC8, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u-u, .va-u, .vb-u, .vc, .vd-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI