To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene HDAC4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
210 supporting clones for gene HDAC4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB006626 brain HDAC4.a 1 to 8458 1 to 8459 A373T tiling clone, available from KIAA,   8459/8459
(100 %)
4 diff
(100.0 %id)
NM_006037.3   HDAC4.a 1 to 8980 1 to 8980 exact RefSeq,   8980/8980
(100 %)
4 diff
(100.0 %id)
DN997617 breast cancer, Mammary gland (cancer tissue) HDAC4.a 619 to 1335 1 to 717       717/717
(100 %)
4 diff
(99.5 %id)
AF132607   HDAC4.a 793 to 4047 1 to 3255 A373T     3255/3255
(100 %)
3 diff
(100.0 %id)
BX401509   HDAC4.a 810 to 1352 1 to 541       541/541
(100 %)
3 diff
(99.5 %id)
TI_1948207714   HDAC4.a 1136 to 1593 129 to 586   fully sequenced,   458/478
(95 %)
8 diff
(98.4 %id)
TI_1948207960   HDAC4.a 1136 to 1593 128 to 585       458/1475
(31 %)
11 diff
(99.3 %id)
TI_1948207961   HDAC4.a 1136 to 1593 586 to 129       458/600
(76 %)
7 diff
(98.9 %id)
EL733755 mixed HDAC4.a 1144 to 1778 1 to 635       635/661
(96 %)
23 diff
(96.6 %id)
TI_1948207715   HDAC4.a 1252 to 1593 474 to 133   fully sequenced,   342/373
(91 %)
0 diff
(100 %id)
BX390880   HDAC4.a 1283 to 2087 1 to 801       801/811
(98 %)
22 diff
(97.3 %id)
BF946656 nervous_normal HDAC4.a 1461 to 1657 205 to 10       196/205
(95 %)
0 diff
(100 %id)
AW842754 colon_normal HDAC4.a 1717 to 1952 240 to 3       238/240
(99 %)
3 diff
(98.8 %id)
BG757997 B-cells, primary B-cells from tonsils (cell line) HDAC4.a 1830 to 2689 1 to 864   tiling clone,   864/904
(95 %)
25 diff
(97.3 %id)
BX391992   HDAC4.a 2144 to 3011 867 to 1       867/867
(100 %)
6 diff
(99.4 %id)
BI022124 marrow HDAC4.a 2586 to 2704 120 to 1       120/120
(100 %)
9 diff
(92.5 %id)
AA327432 colon HDAC4.a 2688 to 3006 1 to 319       319/329
(96 %)
1 diff
(99.7 %id)
TI_1948208232   HDAC4.a 2766 to 3310 125 to 670       546/1387
(39 %)
9 diff
(99.4 %id)
TI_1948208233   HDAC4.a 2766 to 3736 132 to 1107       976/1312
(74 %)
27 diff
(98.0 %id)
BI858680 breast, mammary adenocarcinoma, cell line HDAC4.a 2777 to 3495 1 to 718       718/727
(98 %)
4 diff
(99.5 %id)
TI_57191427   HDAC4.a 2777 to 3495 55 to 772       718/727
(98 %)
4 diff
(99.5 %id)
AA101045 Pancreas HDAC4.a 2980 to 3494 1 to 527       522/529
(98 %)
29 diff
(94.6 %id)
TI_1948208234   HDAC4.a 3161 to 4046 1013 to 128   tiling clone,   886/1268
(69 %)
9 diff
(99.3 %id)
AL120125 amygdala HDAC4.a 3166 to 3524 1 to 359       359/359
(100 %)
1 diff
(99.8 %id)
BU194058 melanotic melanoma, skin HDAC4.a 3309 to 4066 13 to 776       765/862
(88 %)
18 diff
(98.0 %id)
AA064706 Pancreas HDAC4.a 3329 to 3512 1 to 184       184/184
(100 %)
1 diff
(99.5 %id)
BQ301383 bocio_tumor HDAC4.a 3783 to 4262 496 to 17       480/498
(96 %)
1 diff
(99.8 %id)
M79124   HDAC4.a 3850 to 4109 1 to 259       259/259
(100 %)
5 diff
(98.1 %id)
BG574696 breast, mammary adenocarcinoma, cell line HDAC4.a 3858 to 4622 12 to 777       766/777
(98 %)
7 diff
(99.1 %id)
AA064659 Pancreas HDAC4.a 3863 to 4171 311 to 1       311/383
(81 %)
6 diff
(98.5 %id)
AA101046 Pancreas HDAC4.a 3919 to 4453 534 to 1       534/534
(100 %)
12 diff
(97.8 %id)
AA860334   HDAC4.a 4056 to 4472 418 to 4       415/418
(99 %)
0 diff
(100 %id)
AI240068 pooled HDAC4.a 4109 to 4482 375 to 2       374/375
(99 %)
0 diff
(100 %id)
BG386062 adenocarcinoma cell line, colon HDAC4.a 4161 to 4794 1 to 627   tiling clone,   627/627
(100 %)
10 diff
(98.5 %id)
AI381744 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus HDAC4.a 4185 to 4471 307 to 20   AAA   288/288
(100 %)
1 diff
(99.7 %id)
BG983667 colon_normal HDAC4.a 4589 to 4875 12 to 298       287/309
(92 %)
15 diff
(95.2 %id)
BG983457 colon_normal HDAC4.a 4591 to 4865 276 to 2       275/308
(89 %)
0 diff
(100 %id)
CN294313 embryonic stem cells, cell lines H1, H7, andH9 HDAC4.a 4724 to 5165 1 to 442       442/442
(100 %)
0 diff
(100 %id)
AA885606 carcinoid, lung HDAC4.a 4735 to 5080 1 to 344     Submitted on the opposite strand 344/344
(100 %)
1 diff
(99.8 %id)
AA974796 carcinoid, lung HDAC4.a 4735 to 5100 1 to 365     Submitted on the opposite strand 365/365
(100 %)
2 diff
(99.5 %id)
BU164940 epithelioid carcinoma, Pancreas HDAC4.a 4959 to 5794 1 to 849       849/872
(97 %)
21 diff
(97.6 %id)
AI744528 pooled HDAC4.a 5058 to 5601 544 to 1       544/544
(100 %)
1 diff
(99.9 %id)
BG978080 colon_ins HDAC4.a 5523 to 5721 14 to 212       199/212
(93 %)
6 diff
(97.2 %id)
BF735185 amnion_normal HDAC4.a 5529 to 5953 1 to 424       424/424
(100 %)
7 diff
(98.4 %id)
R18298 whole brain HDAC4.a 5553 to 6005 1 to 471       471/474
(99 %)
28 diff
(94.1 %id)
BM469686 embryonal carcinoma, cell line, testis HDAC4.a 5747 to 6591 1 to 853       853/1057
(80 %)
29 diff
(97.3 %id)
BQ224164 large cell carcinoma, lung HDAC4.a 5916 to 6784 1 to 872       872/873
(99 %)
6 diff
(99.4 %id)
BG010449 placenta_normal HDAC4.a 5945 to 6368 18 to 441       424/441
(96 %)
6 diff
(98.7 %id)
H89455   HDAC4.a 5955 to 6202 248 to 4       245/266
(92 %)
0 diff
(100 %id)
CN294312 embryonic stem cells, cell lines H1, H7, andH9 HDAC4.a 6193 to 6814 1 to 622       622/622
(100 %)
0 diff
(100 %id)
TI_154004621   HDAC4.a 6307 to 6900 93 to 686     Submitted on the opposite strand 594/686
(86 %)
6 diff
(99.2 %id)
AW965600   HDAC4.a 6522 to 7124 7 to 609       603/611
(98 %)
12 diff
(98.1 %id)
AF070607 brain HDAC4.a 6526 to 8448 1 to 1923   AAA   1923/1923
(100 %)
2 diff
(99.9 %id)
T08877   HDAC4.a 6527 to 6854 1 to 328       328/328
(100 %)
1 diff
(99.7 %id)
R61177 whole brain HDAC4.a 6527 to 6941 1 to 417       417/425
(98 %)
6 diff
(98.6 %id)
BI020278 marrow HDAC4.a 6539 to 6942 413 to 7       407/413
(98 %)
0 diff
(100 %id)
BM551527 melanotic melanoma, skin HDAC4.a 6827 to 7663 9 to 857       849/1059
(80 %)
32 diff
(97.0 %id)
AU118862 whole embryo, mainly head HDAC4.a 6840 to 7659 2 to 820   capped   819/819
(100 %)
8 diff
(99.1 %id)
BG676825 skin, squamous cell carcinoma HDAC4.a 6895 to 7656 1 to 765       765/766
(99 %)
17 diff
(97.8 %id)
R18843 whole brain HDAC4.a 6908 to 7186 1 to 278       278/287
(96 %)
5 diff
(98.3 %id)
AA436962   HDAC4.a 6919 to 7355 1 to 437       437/437
(100 %)
9 diff
(98.0 %id)
AA128404 muscle, skeletal muscle HDAC4.a 6928 to 7367 1 to 444       444/448
(99 %)
14 diff
(96.9 %id)
BG260783 bladder, transitional cell papilloma, cell line HDAC4.a 7017 to 7672 1 to 650       650/967
(67 %)
10 diff
(99.0 %id)
BG929368 cartilage HDAC4.a 7134 to 7503 94 to 463       370/395
(93 %)
6 diff
(98.5 %id)
AL041830 testis HDAC4.a 7194 to 7683 1 to 489       489/489
(100 %)
9 diff
(98.2 %id)
N40631 melanocyte HDAC4.a 7468 to 7977 1 to 515       515/517
(99 %)
8 diff
(98.5 %id)
Z19163 leg muscle, skeletal muscle HDAC4.a 7488 to 7667 1 to 180       180/181
(99 %)
3 diff
(98.4 %id)
F00480 leg muscle, skeletal muscle HDAC4.a 7489 to 7667 180 to 2       179/181
(98 %)
0 diff
(100 %id)
BE504462 carcinoid, lung HDAC4.a 7555 to 8022 1 to 468     Submitted on the opposite strand 468/468
(100 %)
0 diff
(100 %id)
AI458666 carcinoid, lung HDAC4.a 7557 to 7933 1 to 377     Submitted on the opposite strand 377/378
(99 %)
2 diff
(99.5 %id)
AI198969 anaplastic oligodendroglioma, brain HDAC4.a 7562 to 7962 401 to 1       401/401
(100 %)
0 diff
(100 %id)
BF671227 muscle (skeletal) HDAC4.a 7623 to 8326 1 to 691       691/764
(90 %)
44 diff
(94.3 %id)
BM719944 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HDAC4.a 7628 to 7929 1 to 302   fully sequenced,   302/302
(100 %)
2 diff
(99.4 %id)
BF530903 anaplastic oligodendroglioma with 1p/19qloss, brain HDAC4.a 7651 to 8377 21 to 734       714/921
(77 %)
25 diff
(97.3 %id)
BF823506 kidney_tumor HDAC4.a 7763 to 8291 554 to 25     Submitted on the opposite strand 530/562
(94 %)
0 diff
(100 %id)
TI_151770500   HDAC4.a 7793 to 8560 87 to 857       771/1076
(71 %)
26 diff
(97.6 %id)
AA355294   HDAC4.a 7845 to 8167 1 to 324       324/329
(98 %)
3 diff
(99.1 %id)
AW958471   HDAC4.a 7854 to 8351 1 to 499       499/560
(89 %)
11 diff
(98.1 %id)
AU145327 whole embryo, mainly head HDAC4.a 7857 to 8452 596 to 1       596/596
(100 %)
16 diff
(97.4 %id)
BX097108 whole brain HDAC4.a 7871 to 8458 602 to 15   AAA   588/589
(99 %)
2 diff
(99.7 %id)
BM676799 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HDAC4.a 7899 to 8464 584 to 19   fully sequenced, AAA   566/566
(100 %)
0 diff
(100 %id)
BI494248 cochlea, ear HDAC4.a 7919 to 8458 551 to 13   AAA   539/546
(98 %)
1 diff
(99.9 %id)
BP418503 small intestine HDAC4.a 7949 to 8320 27 to 399     Submitted on the opposite strand 373/399
(93 %)
6 diff
(98.5 %id)
AA528066 colon HDAC4.a 7953 to 8449 495 to 1       495/502
(98 %)
9 diff
(98.3 %id)
AI342576 uterus HDAC4.a 7956 to 8448 493 to 1       493/502
(98 %)
0 diff
(100 %id)
AA528001 colon HDAC4.a 7964 to 8449 486 to 1       486/486
(100 %)
16 diff
(96.8 %id)
AW072681 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma HDAC4.a 7964 to 8461 499 to 2       498/499
(99 %)
0 diff
(100 %id)
AI833143 colon HDAC4.a 7970 to 8448 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
N27858 melanocyte HDAC4.a 7985 to 8452 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AW084671 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma HDAC4.a 7987 to 8452 467 to 1       467/467
(100 %)
4 diff
(99.2 %id)
AA770440   HDAC4.a 8005 to 8457 454 to 2       453/454
(99 %)
0 diff
(100 %id)
AI240282 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus HDAC4.a 8019 to 8457 442 to 5       438/442
(99 %)
0 diff
(100 %id)
AA996024 2 pooled tumors (clear cell type), Kidney HDAC4.a 8021 to 8455 436 to 1       436/436
(100 %)
7 diff
(98.4 %id)
DB537549 hippocampus HDAC4.a 8032 to 8452 1 to 421     Submitted on the opposite strand 421/421
(100 %)
10 diff
(97.7 %id)
AI823559 Kidney HDAC4.a 8032 to 8464 444 to 12   AAA   433/433
(100 %)
0 diff
(100 %id)
AI498343 Kidney HDAC4.a 8034 to 8432 399 to 1       399/399
(100 %)
0 diff
(100 %id)
R43955 whole brain HDAC4.a 8037 to 8458 445 to 17   AAA   429/434
(98 %)
15 diff
(96.6 %id)
BM717989 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HDAC4.a 8039 to 8469 1 to 431   AAA   431/431
(100 %)
5 diff
(98.9 %id)
R42274 whole brain HDAC4.a 8042 to 8452 433 to 20   AAA   414/414
(100 %)
14 diff
(96.7 %id)
F27578 pectoral muscle (after mastectomy) HDAC4.a 8042 to 8409 13 to 381       369/381
(96 %)
6 diff
(98.5 %id)
AI827720 pooled HDAC4.a 8045 to 8458 435 to 22   AAA   414/414
(100 %)
5 diff
(98.8 %id)
AI801599 poorly differentiated adenocarcinoma withsignet ring cell features, stomach HDAC4.a 8051 to 8454 404 to 1       404/404
(100 %)
0 diff
(100 %id)
AW276463 lung, two pooled squamous cell carcinomas HDAC4.a 8060 to 8458 412 to 15   AAA   398/398
(100 %)
5 diff
(98.8 %id)
R61890 whole brain HDAC4.a 8076 to 8457 401 to 5       397/442
(89 %)
0 diff
(100 %id)
F22115 pectoral muscle (after mastectomy) HDAC4.a 8081 to 8449 1 to 368       368/368
(100 %)
3 diff
(99.2 %id)
AI491868 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus HDAC4.a 8105 to 8458 354 to 1       354/354
(100 %)
0 diff
(100 %id)
BM718139 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HDAC4.a 8108 to 8294 10 to 195       186/198
(93 %)
5 diff
(97.5 %id)
BQ375581 testis_normal HDAC4.a 8110 to 8451 1 to 338       338/548
(61 %)
8 diff
(98.6 %id)
AA948549 pooled HDAC4.a 8111 to 8461 352 to 1       352/352
(100 %)
2 diff
(99.5 %id)
BF885183 testis_normal HDAC4.a 8118 to 8223 106 to 1     Submitted on the opposite strand 106/106
(100 %)
2 diff
(98.2 %id)
AA086163 muscle, skeletal muscle HDAC4.a 8141 to 8457 319 to 1       319/319
(100 %)
4 diff
(98.8 %id)
BF448234 carcinoid, lung HDAC4.a 8143 to 8457 315 to 1       315/315
(100 %)
0 diff
(100 %id)
AA350265 brain HDAC4.a 8253 to 8448 196 to 1       196/196
(100 %)
0 diff
(100 %id)
BQ576173 Chondrosarcoma Grade II, Left Pelvis HDAC4.a 8282 to 8975 712 to 19   tiling clone, AAA   694/694
(100 %)
11 diff
(98.5 %id)
AI468361 Prostate HDAC4.a 8302 to 8466 167 to 3       165/167
(98 %)
0 diff
(100 %id)
G43575   HDAC4.a 8314 to 8446 133 to 1     Submitted on the opposite strand 133/133
(100 %)
0 diff
(100 %id)
BU732681 eye, optic nerve HDAC4.a 8315 to 8970 678 to 19   AAA   660/660
(100 %)
3 diff
(99.6 %id)
AW970787   HDAC4.a 8330 to 8969 652 to 1     Submitted on the opposite strand 652/654
(99 %)
9 diff
(98.7 %id)
BF338639 brain, glioblastoma with EGFR amplification HDAC4.a 8342 to 8970 1 to 622   AAA   622/622
(100 %)
10 diff
(98.4 %id)
BM999577 lung, Lung Focal Fibrosis HDAC4.a 8381 to 8969 626 to 19   AAA   608/608
(100 %)
7 diff
(98.9 %id)
TI_153990042   HDAC4.a 8437 to 8975 640 to 98   AAA   543/652
(83 %)
6 diff
(99.1 %id)
AW206037   HDAC4.a 8446 to 8975 551 to 18   AAA   534/534
(100 %)
5 diff
(99.1 %id)
AI654062 Kidney HDAC4.a 8463 to 8968 513 to 8   tiling clone,   506/513
(98 %)
0 diff
(100 %id)
AI675106 Prostate HDAC4.a 8463 to 8976 528 to 2       527/528
(99 %)
0 diff
(100 %id)
AA563587 colon HDAC4.a 8488 to 8970 495 to 1       495/495
(100 %)
9 diff
(98.2 %id)
F28342 pectoral muscle (after mastectomy) HDAC4.a 8502 to 8838 1 to 350       350/350
(100 %)
6 diff
(98.3 %id)
AI186037 lung HDAC4.a 8509 to 8975 475 to 1       475/475
(100 %)
3 diff
(99.4 %id)
AI564233 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors HDAC4.a 8524 to 8969 446 to 2       445/446
(99 %)
0 diff
(100 %id)
AI199675 anaplastic oligodendroglioma, brain HDAC4.a 8542 to 8976 447 to 5   tiling clone,   443/447
(99 %)
0 diff
(100 %id)
AA987969 carcinoid, lung HDAC4.a 8552 to 8970 421 to 3       419/421
(99 %)
0 diff
(100 %id)
BE219602 carcinoid, lung HDAC4.a 8567 to 8970 406 to 3       404/406
(99 %)
0 diff
(100 %id)
BE857721 Prostate HDAC4.a 8621 to 8969 355 to 7       349/355
(98 %)
0 diff
(100 %id)
F37816 pectoral muscle (after mastectomy) HDAC4.a 8630 to 8931 1 to 304       304/304
(100 %)
4 diff
(98.7 %id)
BE139635 serous papillary carcinoma, high grade, 2pooled tumors, uterus HDAC4.a 8703 to 8970 283 to 16   AAA   268/268
(100 %)
1 diff
(99.7 %id)
AA492068 Kidney HDAC4.a 8762 to 8975 227 to 15   AAA   213/213
(100 %)
6 diff
(97.2 %id)
AK302719 testis HDAC4.b 1 to 2707 1 to 2706 A195E A196R H197T S198A P199L ... tiling clone,   2706/2706
(100 %)
3 diff
(99.9 %id)
DC402081 testis HDAC4.b 1 to 552 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
AK310603 thymus HDAC4.c 1 to 3158 1 to 3158 exact tiling clone,   3158/3158
(100 %)
0 diff
(100 %id)
DC407032 thymus HDAC4.c 1 to 559 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC408368 thymus HDAC4.c 109 to 668 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
BP315413 mammary gland HDAC4.d 1 to 494 1 to 493   tiling clone,   493/584
(84 %)
4 diff
(99.4 %id)
DC401099 testis HDAC4.d 1 to 541 1 to 543       543/543
(100 %)
4 diff
(99.3 %id)
AK308791 brain HDAC4.d 3 to 3122 1 to 3120 exact tiling clone,   3120/3120
(100 %)
3 diff
(100.0 %id)
DC318863 brain HDAC4.d 3 to 494 1 to 493       493/538
(91 %)
3 diff
(99.5 %id)
DC401678 testis HDAC4.d 3 to 538 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
DB460786 testis HDAC4.d 5 to 381 1 to 377   tiling clone,   377/377
(100 %)
0 diff
(100 %id)
DC347112 tongue, tumor tissue HDAC4.d 8 to 566 1 to 560       560/575
(97 %)
3 diff
(99.5 %id)
BP215702 corpus callosum HDAC4.d 9 to 494 1 to 488       488/582
(83 %)
9 diff
(98.5 %id)
DC396198 testis HDAC4.d 9 to 521 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
DC401046 testis HDAC4.d 16 to 554 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
DC401270 testis HDAC4.d 16 to 566 1 to 551       551/553
(99 %)
2 diff
(99.7 %id)
AL043738 testis HDAC4.d 1588 to 1897 1 to 310       310/310
(100 %)
0 diff
(100 %id)
AK021826 whole embryo, mainly head HDAC4.d 2863 to 4901 1 to 2039   tiling clone, available from FLJ,   2039/2039
(100 %)
11 diff
(99.5 %id)
AU119391 whole embryo, mainly head HDAC4.d 2864 to 3605 2 to 746   capped   745/745
(100 %)
14 diff
(98.2 %id)
CB993052 placenta, pre-eclamptic placenta HDAC4.d 2972 to 3701 27 to 764   tiling clone,   738/822
(89 %)
20 diff
(97.6 %id)
CB961611 placenta, pre-eclamptic placenta HDAC4.d 2972 to 3683 27 to 748       722/766
(94 %)
14 diff
(98.2 %id)
BG060037 brain, glioblastoma without EGFR amplification HDAC4.d 3334 to 3830 497 to 1       497/497
(100 %)
3 diff
(99.4 %id)
AW512783 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors HDAC4.d 3366 to 3828 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
AI799547 ovary, tumor, 5 pooled (see description) HDAC4.d 3399 to 3831 433 to 1   tiling clone,   433/433
(100 %)
0 diff
(100 %id)
AW075430 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney HDAC4.d 3420 to 3831 411 to 1       411/411
(100 %)
4 diff
(99.1 %id)
BX098328 ovary, tumor, 5 pooled (see description) HDAC4.d 3423 to 3830 422 to 15   AAA   408/408
(100 %)
0 diff
(100 %id)
AI798188 pooled HDAC4.d 3452 to 3831 382 to 3       380/382
(99 %)
0 diff
(100 %id)
AA906651 carcinoid, lung HDAC4.d 3591 to 3830 240 to 1       240/240
(100 %)
1 diff
(99.6 %id)
BM686973 eye, optic nerve HDAC4.d 3606 to 3830 9 to 233       225/233
(96 %)
1 diff
(99.6 %id)
CB114967 Liver HDAC4.d 3837 to 4341 1 to 505       505/505
(100 %)
0 diff
(100 %id)
AU145749 whole embryo, mainly head HDAC4.d 4322 to 4901 577 to 1       577/585
(98 %)
13 diff
(97.8 %id)
AK303368 thymus HDAC4.e 1 to 2744 1 to 2744 exact tiling clone,   2744/2744
(100 %)
1 diff
(100.0 %id)
AK303467 thymus HDAC4.f 1 to 2775 1 to 2775 L663P tiling clone,   2775/2775
(100 %)
3 diff
(99.9 %id)
DC409357 thymus HDAC4.f 1 to 565 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
CF272588   HDAC4.f 2134 to 2700 568 to 1   tiling clone, Submitted on the opposite strand 568/568
(100 %)
5 diff
(99.2 %id)
TI_1948208235   HDAC4.g 1 to 908 1030 to 124 L2Q A3V V4A W5R C6G ... tiling clone,   907/1290
(70 %)
19 diff
(98.6 %id)
BX384848   HDAC4.h 1 to 815 815 to 1 exact tiling clone,   819/819
(100 %)
0 diff
(100 %id)
BF365987 nervous_tumor HDAC4.i 1 to 456 9 to 464   tiling clone,   456/464
(98 %)
6 diff
(98.8 %id)
AK310488 testis HDAC4.i 88 to 1106 1 to 1019 exact tiling clone,   1019/1019
(100 %)
0 diff
(100 %id)
DB076735 testis HDAC4.i 89 to 636 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB088960 testis HDAC4.i 89 to 654 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB099540 testis HDAC4.i 101 to 694 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
BI463142 testis HDAC4.i 111 to 876 1 to 765       765/765
(100 %)
11 diff
(98.6 %id)
DB088011 testis HDAC4.i 117 to 675 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB034121 testis HDAC4.i 122 to 674 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB100506 testis HDAC4.i 122 to 699 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB071859 testis HDAC4.i 124 to 660 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB079002 testis HDAC4.i 124 to 664 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB079738 testis HDAC4.i 124 to 585 2 to 463   capped   462/462
(100 %)
1 diff
(99.8 %id)
DB079884 testis HDAC4.i 124 to 702 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
AK311582 testis HDAC4.i 126 to 1043 1 to 918       918/918
(100 %)
0 diff
(100 %id)
DB035018 testis HDAC4.i 127 to 674 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BP310111 brain HDAC4.j-u 1 to 582 1 to 582 Q100R tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
BM793506 Ascites, stomach HDAC4.k 1 to 578 1 to 578 H33Y E165D tiling clone,   578/578
(100 %)
3 diff
(99.5 %id)
CR625452 Placenta Cot 25-normalized HDAC4.l-u 1 to 1765 1 to 1765 exact tiling clone,   1765/1765
(100 %)
0 diff
(100 %id)
BX399421 Placenta Cot 25-normalized HDAC4.l-u 1 to 831 1 to 821   fully sequenced,   821/821
(100 %)
10 diff
(98.8 %id)
DR760115 embryonic stem HDAC4.l-u 656 to 839 1 to 184       184/184
(100 %)
8 diff
(95.7 %id)
BX399420 Placenta Cot 25-normalized HDAC4.l-u 801 to 1765 951 to 1   fully sequenced,   951/951
(100 %)
18 diff
(98.2 %id)
DB446980 testis HDAC4.m 1 to 445 1 to 445 P140T tiling clone,   445/446
(99 %)
5 diff
(98.9 %id)
DC423553 uterus HDAC4.n 1 to 553 2 to 554 exact tiling clone,   554/554
(100 %)
0 diff
(100 %id)
BQ213953 embryonal carcinoma, cell line, testis HDAC4.o 1 to 343 1 to 343   tiling clone,   343/1169
(29 %)
1 diff
(100.0 %id)
CR607186 T cells (Jurkat cell line) Cot10-normalized HDAC4.o 268 to 1262 1 to 995   tiling clone,   995/995
(100 %)
0 diff
(100 %id)
AL559141 T cells from T cell leukemia HDAC4.o 268 to 620 1 to 352   fully sequenced,   352/352
(100 %)
3 diff
(99.2 %id)
AL580826 T cells from T cell leukemia HDAC4.o 559 to 1262 702 to 1   fully sequenced,   702/702
(100 %)
4 diff
(99.5 %id)
BF349535 head_neck HDAC4.o 703 to 1016 22 to 336       315/336
(93 %)
6 diff
(98.3 %id)
BF757781 colon HDAC4.o 710 to 1076 1 to 363       363/369
(98 %)
18 diff
(95.2 %id)
DB512132 testis HDAC4.p 1 to 451 1 to 451 L10V A11S V16L F24L D27Y ... tiling clone, Submitted on the opposite strand 451/451
(100 %)
10 diff
(97.8 %id)
BF877987 lung_tumor HDAC4.q 1 to 335 11 to 350 K15* tiling clone,   338/360
(93 %)
23 diff
(93.7 %id)
BM005732 hepatocellular carcinoma, cell line, Liver HDAC4.r 1 to 924 1 to 916 P28A P29S V30C W31M H32A ... tiling clone,   916/916
(100 %)
20 diff
(97.9 %id)
TI_59385673   HDAC4.r 2 to 924 60 to 974 P28A P29S V30C W31M H32A ...     915/915
(100 %)
19 diff
(98.0 %id)
BQ645467 hepatocellular carcinoma, cell line, Liver HDAC4.r 5 to 738 1 to 742       742/1048
(70 %)
13 diff
(98.8 %id)
DW434246 Liver HDAC4.r 519 to 761 17 to 259   tiling clone,   243/259
(93 %)
6 diff
(97.7 %id)
DA313703 hippocampus HDAC4.s-u 1 to 530 2 to 531   tiling clone, capped   530/530
(100 %)
1 diff
(99.9 %id)
DA238498 brain HDAC4.s-u 217 to 808 2 to 592   tiling clone, capped   591/591
(100 %)
2 diff
(99.7 %id)
DA939882 Spleen HDAC4.s-u 475 to 1061 2 to 588 exact tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
AL596754 human spinal cord HDAC4.s-u 525 to 1067 28 to 568 C43X Y44X V48X tiling clone,   541/568
(95 %)
7 diff
(98.8 %id)
BQ712186 Spleen HDAC4.t-u 1 to 647 1 to 649 exact tiling clone,   649/956
(67 %)
20 diff
(98.0 %id)
BF944064 nervous_normal HDAC4.t-u 233 to 363 148 to 18     Submitted on the opposite strand 131/148
(88 %)
0 diff
(100 %id)
DB333095 Spleen HDAC4.u-u 1 to 561 560 to 1 A47L S48P C49V V50C H51T ... tiling clone,   560/560
(100 %)
2 diff
(99.7 %id)
AJ707294 heart HDAC4.va-u 1 to 538 1 to 538 exact tiling clone,   538/538
(100 %)
0 diff
(100 %id)
AK303617 thymus Gene HDAC4, variant not shown         This clone was ignored    
BC039904 Testis, embryonal carcinoma Gene HDAC4, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
DB517355.
matches multiple genes
testis Gene kleykerbo, variant not shown         This clone was ignored, also hits gene kleykerbo    
DB517355.
matches multiple genes
testis Gene HDAC4, variant not shown         This clone was ignored, also hits gene kleykerbo    
DB451841.
matches multiple genes
testis Gene kleykerbo, variant not shown         This clone was ignored, also hits gene kleykerbo    
DB451841.
matches multiple genes
testis Gene HDAC4, variant not shown         This clone was ignored, also hits gene kleykerbo    
T79998 whole brain Gene HDAC4, variant not shown         This clone was ignored    
DA864846 placenta Gene HDAC4, variant not shown       capped Suspected internal deletion, this clone was ignored    
DC410671 thymus Gene HDAC4, variant not shown         This clone was ignored    
DB255667 uterus Gene HDAC4, variant not shown       capped This clone was ignored    
DB351378 uterus Gene HDAC4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m, .n, .o, .p, .q, .r, .s-u, .t-u, .u-u, .va-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI