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Gene HCN3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
103 supporting clones for gene HCN3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA499649 brain .a 1 to 555 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA127524 cerebellum .a 2 to 587 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
DA216230 brain .a 2 to 487 2 to 491   capped   490/490
(100 %)
4 diff
(99.2 %id)
DA793795 brain .a 2 to 547 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA095715 cerebellum .a 6 to 547 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA094832 cerebellum .a 7 to 560 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA092166 cerebellum .a 10 to 520 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA800872 brain .a 10 to 562 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AF488550 brain .a 157 to 2496 1 to 2340 L596R T724X     2340/2340
(100 %)
1 diff
(100.0 %id)
NM_020897.1   .a 157 to 3873 1 to 3717 exact RefSeq,   3717/3717
(100 %)
0 diff
(100 %id)
CN429301 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 228 to 600 1 to 373       373/373
(100 %)
1 diff
(99.8 %id)
AB040968 brain .a 352 to 3847 1 to 3496   tiling clone, available from KIAA,   3496/3496
(100 %)
2 diff
(100.0 %id)
AI571225 anaplastic oligodendroglioma, brain .a 365 to 826 465 to 4       462/465
(99 %)
0 diff
(100 %id)
DA811505 brain .a 368 to 925 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB169730 kidney, tumor tissue .a 368 to 862 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
DA169687 amygdala .a 561 to 1126 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA414799 thalamus .a 572 to 1124 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BC000066 Brain, neuroblastoma .a 782 to 3873 10 to 3101   available from MGC, AAA   3092/3092
(100 %)
4 diff
(99.9 %id)
BE260963 brain, neuroblastoma .a 801 to 1501 1 to 693   available from MGC,   693/780
(88 %)
16 diff
(98.0 %id)
DA522053 brain .a 890 to 1454 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BQ325857 colon_ins .a 1076 to 1541 1 to 465       465/465
(100 %)
2 diff
(99.6 %id)
BC028024 Brain, anaplastic oligodendroglioma with1p/19q loss .a 1147 to 3873 12 to 2738   tiling clone, available from MGC, AAA   2727/2727
(100 %)
3 diff
(99.9 %id)
BF346730 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1147 to 1740 1 to 608   available from MGC,   608/608
(100 %)
30 diff
(95.1 %id)
CV030457 mixed .a 1149 to 1755 1 to 606       606/606
(100 %)
2 diff
(99.7 %id)
BE798933 lung, small cell carcinoma .a 1183 to 2048 14 to 878   AAA   865/1054
(82 %)
27 diff
(97.5 %id)
BE793179 lung, small cell carcinoma .a 1220 to 2049 1 to 835       835/858
(97 %)
17 diff
(98.1 %id)
TI_57243175   .a 1476 to 2174 28 to 726       699/726
(96 %)
8 diff
(98.9 %id)
BI918260 brain .a 1483 to 2174 1 to 692       692/692
(100 %)
3 diff
(99.6 %id)
TI_1948093684   .a 1627 to 2487 996 to 130       867/1214
(71 %)
23 diff
(98.2 %id)
TI_1948093845   .a 1637 to 2496 975 to 118       858/1201
(71 %)
23 diff
(98.1 %id)
BI117045 lung, small cell carcinoma .a 1651 to 2521 1 to 879       879/963
(91 %)
44 diff
(95.5 %id)
CD513082 brain, Pituitary .a 1691 to 2434 34 to 778       745/912
(81 %)
16 diff
(98.3 %id)
DA770024 brain .a 1727 to 2290 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BF803395 colon_ins .a 1783 to 2097 318 to 6     Submitted on the opposite strand 313/318
(98 %)
17 diff
(94.7 %id)
TI_1948094183   .a 1806 to 2496 811 to 118       694/1336
(51 %)
10 diff
(99.3 %id)
TI_1948094013   .a 1809 to 2496 807 to 118       690/1263
(54 %)
7 diff
(99.5 %id)
BY995723   .a 2064 to 2758 46 to 742       697/742
(93 %)
6 diff
(99.2 %id)
TI_57239131   .a 2187 to 3101 24 to 930       907/931
(97 %)
17 diff
(98.2 %id)
BI915117 brain .a 2194 to 3101 1 to 900       900/901
(99 %)
13 diff
(98.6 %id)
CB265940 adipose .a 2227 to 2771 1 to 544       544/544
(100 %)
2 diff
(99.7 %id)
CR625647 T cells (Jurkat cell line) Cot10-normalized .a 2299 to 3841 1 to 1543       1543/1543
(100 %)
0 diff
(100 %id)
AL559044 T cells from T cell leukemia .a 2299 to 3215 1 to 915       915/915
(100 %)
3 diff
(99.7 %id)
DA540374 lung .a 2317 to 2698 2 to 383   capped   382/382
(100 %)
5 diff
(98.7 %id)
BU167626 eye, retinoblastoma .a 2433 to 3231 1 to 805       805/820
(98 %)
15 diff
(98.2 %id)
BI063704 uterus_tumor .a 2443 to 2860 1 to 418       418/418
(100 %)
0 diff
(100 %id)
BM713434 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2527 to 2932 1 to 406   fully sequenced,   406/406
(100 %)
0 diff
(100 %id)
AA384187 thyroid gland .a 2594 to 2924 1 to 331       331/331
(100 %)
0 diff
(100 %id)
BM693435 eye, Retina Foveal and Macular .a 2702 to 3105 1 to 404       404/404
(100 %)
0 diff
(100 %id)
CN429300 embryonic stem cells, cell lines H1, H7, andH9 .a 2817 to 3208 1 to 392       392/392
(100 %)
0 diff
(100 %id)
AW844195 colon_normal .a 2849 to 3256 415 to 7       409/426
(96 %)
0 diff
(100 %id)
BM678352 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2902 to 3355 467 to 14   fully sequenced, AAA   454/454
(100 %)
6 diff
(98.7 %id)
FN123850 breast carcinoma .a 2977 to 3068 89 to 1     Submitted on the opposite strand 89/89
(100 %)
4 diff
(95.6 %id)
AL580749 T cells from T cell leukemia .a 3010 to 3793 834 to 48       787/801
(98 %)
0 diff
(100 %id)
BX389896   .a 3083 to 3826 1 to 742       742/757
(98 %)
15 diff
(98.1 %id)
BM691904 eye, human retina .a 3085 to 3577 3 to 496       494/496
(99 %)
6 diff
(98.8 %id)
BX389895   .a 3086 to 3709 1 to 620       620/627
(98 %)
22 diff
(96.5 %id)
BQ448299 Knee, Osteoarthritic Cartilage .a 3128 to 3873 761 to 19   AAA   743/743
(100 %)
4 diff
(99.5 %id)
AA569959 breast .a 3365 to 3873 507 to 1       507/507
(100 %)
3 diff
(99.5 %id)
AI457329 colon, moderately-differentiated adenocarcinoma .a 3372 to 3761 414 to 25   AAA   390/390
(100 %)
1 diff
(99.8 %id)
AA569945 breast .a 3422 to 3873 449 to 1       449/449
(100 %)
5 diff
(98.9 %id)
AW772464 Kidney .a 3422 to 3874 458 to 6   tiling clone,   453/458
(98 %)
0 diff
(100 %id)
AI568500 anaplastic oligodendroglioma, brain .a 3425 to 3873 471 to 23   AAA   449/449
(100 %)
5 diff
(98.9 %id)
AW001103 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 3433 to 3874 449 to 8       442/449
(98 %)
0 diff
(100 %id)
AA569834 breast .a 3444 to 3873 430 to 1       430/431
(99 %)
1 diff
(99.8 %id)
CA455242 mixed (pool of 40 RNAs) .a 3497 to 3871 1 to 375       375/377
(99 %)
3 diff
(99.3 %id)
AA665929   .a 3503 to 3762 273 to 14   AAA   260/260
(100 %)
0 diff
(100 %id)
AW243139 Kidney .a 3523 to 3873 351 to 1       351/351
(100 %)
0 diff
(100 %id)
AW300613 Kidney .a 3523 to 3873 351 to 1       351/351
(100 %)
2 diff
(99.5 %id)
DW461092 Liver .a 3646 to 3760 17 to 131       115/131
(87 %)
6 diff
(95.5 %id)
AK299333   .b 1 to 2569 2 to 2570 exact tiling clone,   2570/2570
(100 %)
3 diff
(99.9 %id)
DA757988   .b 1 to 507 2 to 508   capped   507/507
(100 %)
1 diff
(99.9 %id)
DB475588 hippocampus .b 9 to 483 1 to 475       475/475
(100 %)
0 diff
(100 %id)
DA112488 cerebellum .b 10 to 546 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA533204 brain .b 10 to 565 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA774755 brain .b 10 to 546 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA789112 brain .b 10 to 582 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB282055 uterus .b 10 to 556 2 to 552   capped   551/551
(100 %)
5 diff
(99.1 %id)
DA078950 cerebellum .b 11 to 570 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CN429302 embryonic stem cells, cell lines H1, H7, andH9 .b 14 to 585 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DR000745 fetal brain .b 15 to 778 9 to 771   tiling clone,   763/771
(98 %)
7 diff
(99.1 %id)
DR005083 placenta .b 21 to 697 1 to 677       677/677
(100 %)
5 diff
(99.3 %id)
DA809823 brain .b 30 to 620 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA493301 brain .b 31 to 612 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA722534   .b 51 to 638 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DR003598 hippocampus .b 52 to 678 9 to 635       627/635
(98 %)
7 diff
(98.9 %id)
BG986996 head_neck .b 2469 to 2943 34 to 508   tiling clone,   475/510
(93 %)
8 diff
(98.5 %id)
BG988240 head_neck .b 2469 to 3000 15 to 545   tiling clone,   531/545
(97 %)
9 diff
(98.4 %id)
DA238092 brain .c 1 to 576 2 to 578   tiling clone, capped   577/577
(100 %)
3 diff
(99.5 %id)
DA284835 corpus callosum .c 96 to 641 2 to 547   tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
BQ070889 brain, neuroblastoma, cell line .c 436 to 1346 1 to 920   tiling clone,   920/1030
(89 %)
21 diff
(98.0 %id)
AK055840 Kidney .d 1 to 3245 1 to 3245 exact tiling clone, available from FLJ,   3245/3245
(100 %)
3 diff
(100.0 %id)
DA626265 Kidney .d 2 to 548 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA774494 brain .d 330 to 878 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA523993 brain .d 1144 to 1704 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB544409 hippocampus .d 2546 to 3243 1 to 696   tiling clone, Submitted on the opposite strand 696/698
(99 %)
9 diff
(98.8 %id)
DB320650 Kidney .d 2700 to 3245 547 to 1       547/547
(100 %)
2 diff
(99.7 %id)
BC111364 Embryonic stem cells, isolated from theInner Cell Mass of Blastocyst stage embryos anddifferentiated to an early neural progentior cell type,BG01, Nestin+, Musashi+-, Passage number:- 18 .e-u 1 to 865 1 to 865 exact tiling clone, AAA   865/865
(100 %)
0 diff
(100 %id)
CX872349 embryonic stem .e-u 1 to 754 1 to 754 exact     754/754
(100 %)
0 diff
(100 %id)
DB150980 thymus .f 1 to 585 2 to 586   tiling clone, capped   585/585
(100 %)
0 diff
(100 %id)
DA076089 cerebellum .f 57 to 610 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA224152 brain .f 106 to 659 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BX956492   .f 281 to 927 1 to 647 exact tiling clone,   647/647
(100 %)
1 diff
(99.9 %id)
DA228814 brain .g-u 1 to 560 2 to 561 exact tiling clone, capped   560/561
(99 %)
1 diff
(99.9 %id)
AW291242   Gene HCN3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
CA428857 Bone, Subchondral Bone Gene HCN3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI