To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene HCN2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
64 supporting clones for gene HCN2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AJ012582 heart HCN2.a 1 to 3406 1 to 3406 G849R tiling clone, AAA   3406/3406
(100 %)
5 diff
(99.9 %id)
NM_001194.3   HCN2.a 1 to 3406 1 to 3406 exact RefSeq, AAA   3406/3406
(100 %)
0 diff
(100 %id)
AF065164   HCN2.a 19 to 3390 1 to 3372 T17S A19T P20T A29R Q32K tiling clone,   3372/3372
(100 %)
6 diff
(99.9 %id)
DQ854815   HCN2.a 33 to 389 1 to 357       357/357
(100 %)
0 diff
(100 %id)
TI_1252805310   HCN2.a 52 to 578 528 to 1       528/626
(84 %)
0 diff
(100 %id)
TI_1252805320   HCN2.a 52 to 570 111 to 630   AAA Submitted on the opposite strand 520/630
(82 %)
6 diff
(99.1 %id)
BC118001 Synthetic constructs HCN2.a 52 to 2720 33 to 2701       2669/2728
(97 %)
9 diff
(99.7 %id)
BF057277 pooled germ cell tumors HCN2.a 298 to 861 1 to 564     Submitted on the opposite strand 564/564
(100 %)
0 diff
(100 %id)
BM929321 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN2.a 306 to 844 539 to 1     Submitted on the opposite strand 539/539
(100 %)
1 diff
(99.9 %id)
TI_1252805308   HCN2.a 419 to 957 541 to 5       537/542
(99 %)
1 diff
(99.9 %id)
BI756607 brain HCN2.a 469 to 1271 1 to 804       804/809
(99 %)
5 diff
(99.4 %id)
TI_57220045   HCN2.a 469 to 1271 37 to 840       804/845
(95 %)
11 diff
(98.7 %id)
BC039619 Brain, hippocampus HCN2.a 488 to 2281 1 to 1794   available from MGC,   1794/1794
(100 %)
2 diff
(99.9 %id)
BM547151 brain, hippocampus HCN2.a 488 to 1182 20 to 716   available from MGC,   697/1082
(64 %)
19 diff
(98.3 %id)
AF064877 brain HCN2.a 490 to 2281 1 to 1792       1792/1792
(100 %)
10 diff
(99.5 %id)
BQ324604 colon_ins HCN2.a 495 to 780 283 to 1       283/284
(99 %)
12 diff
(95.8 %id)
BI752028 brain HCN2.a 509 to 1357 1 to 851       851/852
(99 %)
4 diff
(99.6 %id)
TI_57215049   HCN2.a 509 to 1357 45 to 895       851/896
(94 %)
10 diff
(98.9 %id)
CA488767   HCN2.a 542 to 1272 1 to 732       732/895
(81 %)
12 diff
(98.7 %id)
BI490063 pooled brain, lung, testis HCN2.a 592 to 1521 1 to 932   fully sequenced,   932/932
(100 %)
18 diff
(98.1 %id)
TI_43960976   HCN2.a 592 to 1521 76 to 1007   fully sequenced,   932/1007
(92 %)
24 diff
(97.7 %id)
TI_1252805306   HCN2.a 650 to 1269 623 to 4       620/625
(99 %)
2 diff
(99.7 %id)
TI_1252805136   HCN2.a 715 to 1178 1 to 467       467/467
(100 %)
21 diff
(95.6 %id)
BQ337896 nervous_normal HCN2.a 752 to 1099 10 to 359       350/359
(97 %)
6 diff
(98.4 %id)
BQ341072 nervous_normal HCN2.a 755 to 1064 9 to 319       311/319
(97 %)
6 diff
(98.2 %id)
TI_1252805304   HCN2.a 970 to 1522 620 to 67       554/620
(89 %)
1 diff
(99.9 %id)
DR762372 embryonic stem HCN2.a 1021 to 1830 1 to 810       810/810
(100 %)
6 diff
(99.3 %id)
TI_1252805144   HCN2.a 1026 to 1599 1 to 573       573/573
(100 %)
7 diff
(98.8 %id)
CA488537   HCN2.a 1107 to 1923 1 to 825       825/913
(90 %)
15 diff
(98.4 %id)
AF064851 brain HCN2.a 1259 to 2289 1031 to 1     Submitted on the opposite strand 1031/1031
(100 %)
0 diff
(100 %id)
TI_1252805300   HCN2.a 1316 to 1878 596 to 35       560/596
(93 %)
0 diff
(100 %id)
TI_1252805298   HCN2.a 1349 to 1875 556 to 31       524/558
(93 %)
19 diff
(96.6 %id)
TI_1252805150   HCN2.a 1363 to 1949 13 to 603       589/603
(97 %)
9 diff
(98.6 %id)
BE546989 cervical carcinoma cell line, cervix HCN2.a 1431 to 2178 1 to 747       747/815
(91 %)
13 diff
(98.5 %id)
BI490383 pooled brain, lung, testis HCN2.a 1460 to 2280 823 to 1   fully sequenced,   823/823
(100 %)
9 diff
(99.0 %id)
TI_43960977   HCN2.a 1460 to 2291 879 to 47   fully sequenced,   833/879
(94 %)
9 diff
(99.0 %id)
BX282916 multiple sclerosis lesions HCN2.a 1576 to 2023 1 to 452       452/452
(100 %)
8 diff
(98.3 %id)
CR742764 multiple sclerosis lesions HCN2.a 1576 to 2023 1 to 452       452/452
(100 %)
8 diff
(98.3 %id)
AW073171 brain, glioblastoma (pooled) HCN2.a 1608 to 2289 679 to 1       679/691
(98 %)
11 diff
(98.5 %id)
TI_1252805294   HCN2.a 1627 to 2192 585 to 20       566/587
(96 %)
1 diff
(99.9 %id)
TI_1252805156   HCN2.a 1670 to 2183 8 to 525       518/525
(98 %)
12 diff
(97.8 %id)
CA842473 Pancreas, Purified pancreatic islet HCN2.a 1671 to 2120 4 to 453       450/453
(99 %)
8 diff
(98.3 %id)
CK902966 Pancreas, Purified pancreatic islet HCN2.a 1674 to 2230 557 to 1     Submitted on the opposite strand 557/560
(99 %)
3 diff
(99.5 %id)
CK902965 Pancreas, Purified pancreatic islet HCN2.a 1683 to 2224 1 to 542     Submitted on the opposite strand 542/542
(100 %)
0 diff
(100 %id)
CA842988 Pancreas, Purified pancreatic islet HCN2.a 1686 to 2249 564 to 1       564/564
(100 %)
0 diff
(100 %id)
BF593827 brain, glioblastoma (pooled) HCN2.a 1700 to 2289 591 to 1       591/595
(99 %)
18 diff
(97.0 %id)
BU956439 adenocarcinoma, cell line, breast HCN2.a 1701 to 2254 572 to 12     Submitted on the opposite strand 561/1120
(50 %)
15 diff
(98.7 %id)
CB054838.
matches multiple genes
brain, glioblastoma (pooled) HCN2.a 1721 to 2281 9 to 569     also hits gene LOC728424 561/569
(98 %)
1 diff
(99.9 %id)
AI809833 B-cell, chronic lymphotic leukemia HCN2.a 1722 to 2289 568 to 1       568/568
(100 %)
4 diff
(99.3 %id)
AA843273 parathyroid gland, parathyroid tumor HCN2.a 1758 to 2265 509 to 1       509/509
(100 %)
12 diff
(97.7 %id)
BF510959   HCN2.a 1769 to 2288 520 to 1       520/520
(100 %)
0 diff
(100 %id)
AI422949 brain, glioblastoma (pooled) HCN2.a 1806 to 2289 484 to 1       484/484
(100 %)
1 diff
(99.8 %id)
AW452312   HCN2.a 2033 to 2288 256 to 1       256/256
(100 %)
1 diff
(99.7 %id)
TI_1252805162   HCN2.a 2052 to 2603 14 to 567       554/570
(97 %)
5 diff
(99.2 %id)
TI_1252805288   HCN2.a 2156 to 2689 535 to 3       533/535
(99 %)
0 diff
(100 %id)
TI_1252805168   HCN2.a 2221 to 2720 8 to 509   AAA   502/600
(83 %)
6 diff
(99.0 %id)
TI_1252805222   HCN2.a 2224 to 2720 623 to 127     Submitted on the opposite strand 497/623
(79 %)
0 diff
(100 %id)
TI_1252805314   HCN2.a 2251 to 2720 590 to 121     Submitted on the opposite strand 470/590
(79 %)
0 diff
(100 %id)
TI_153962758   HCN2.a 2900 to 3389 119 to 610       492/971
(50 %)
24 diff
(97.6 %id)
BU729013 eye, optic nerve HCN2.a 2922 to 3406 503 to 19   AAA   485/485
(100 %)
16 diff
(96.8 %id)
BP390894 pancreatic islet HCN2.a 3006 to 3403 1 to 403     Submitted on the opposite strand 403/405
(99 %)
6 diff
(98.6 %id)
AI421964 brain, glioblastoma (pooled) HCN2.a 3155 to 3403 278 to 30   AAA   249/249
(100 %)
5 diff
(98.0 %id)
AI356780 brain, glioblastoma (pooled) HCN2.a 3271 to 3408 138 to 1       138/143
(96 %)
2 diff
(98.7 %id)
BX281160 brain Gene HCN2, variant not shown         Suspected internal deletion, this clone was ignored    
H50134 brain Gene HCN2, variant not shown         Suspected internal deletion, this clone was ignored    
BG036895 brain, hippocampus Gene HCN2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI