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Gene HCN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
37 supporting clones for gene HCN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN413408 embryonic stem cells, cell lines H1, H7, andH9 HCN1.a 1 to 515 1 to 515   tiling clone,   515/515
(100 %)
1 diff
(99.9 %id)
AF488549 brain HCN1.a 34 to 2781 1 to 2748   tiling clone,   2748/2748
(100 %)
6 diff
(99.8 %id)
NM_021072.2   HCN1.a 34 to 5389 1 to 5356   RefSeq, AAA   5356/5356
(100 %)
0 diff
(100 %id)
DR003732 hippocampus HCN1.a 420 to 1054 10 to 644   tiling clone,   635/645
(98 %)
8 diff
(98.8 %id)
AF064876 brain HCN1.a 422 to 2645 1 to 2224   tiling clone, AAA   2224/2241
(99 %)
12 diff
(99.5 %id)
BX509817   HCN1.a 1151 to 1759 1 to 609       609/609
(100 %)
0 diff
(100 %id)
DN989441 brain, whole brain HCN1.a 1371 to 1931 5 to 565       561/565
(99 %)
6 diff
(99.0 %id)
CV428508 nervous_normal HCN1.a 1675 to 2066 29 to 420       395/422
(93 %)
11 diff
(97.4 %id)
H45591 brain HCN1.a 1687 to 2014 1 to 333       333/356
(93 %)
8 diff
(97.8 %id)
CR747222 brain HCN1.a 1688 to 2160 1 to 473       473/473
(100 %)
0 diff
(100 %id)
DB483001 hippocampus HCN1.a 1837 to 2286 1 to 450       450/450
(100 %)
12 diff
(97.4 %id)
BX955363   HCN1.a 1871 to 2290 1 to 420       420/420
(100 %)
2 diff
(99.6 %id)
AW054787 anaplastic oligodendroglioma, brain HCN1.a 2317 to 2998 693 to 12   AAA   682/684
(99 %)
18 diff
(97.4 %id)
BX537747 human retina HCN1.a 2321 to 5389 131 to 3198   tiling clone, available from DKFZ, AAA   3068/3198
(95 %)
7 diff
(99.8 %id)
CR601376 Neuroblastoma Cot 25-normalized HCN1.a 3193 to 4804 1 to 1612   tiling clone,   1612/1612
(100 %)
0 diff
(100 %id)
BX395019 Neuroblastoma Cot 25-normalized HCN1.a 3193 to 3783 1 to 579   fully sequenced,   579/579
(100 %)
1 diff
(99.9 %id)
BM931647 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.a 3220 to 3634 1 to 415   fully sequenced,   415/415
(100 %)
0 diff
(100 %id)
BM675680 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.a 3604 to 4066 479 to 17   fully sequenced, AAA   463/463
(100 %)
0 diff
(100 %id)
AK094523 alzheimer cortex HCN1.a 3618 to 5396 1 to 1779   tiling clone, available from FLJ,   1779/1779
(100 %)
1 diff
(100.0 %id)
DA134394 alzheimer cortex HCN1.a 3619 to 4160 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BX395018 Neuroblastoma Cot 25-normalized HCN1.a 3753 to 4804 1050 to 1   fully sequenced,   1050/1050
(100 %)
18 diff
(98.3 %id)
R51255 whole brain HCN1.a 3914 to 4398 1 to 495       495/495
(100 %)
28 diff
(94.4 %id)
DB301121 alzheimer cortex HCN1.a 4859 to 5396 538 to 1       538/538
(100 %)
0 diff
(100 %id)
R51256 whole brain HCN1.a 5036 to 5399 381 to 6   tiling clone,   376/381
(98 %)
0 diff
(100 %id)
BF671513 muscle (skeletal) HCN1.b-u 1 to 649 1 to 652   tiling clone,   652/736
(88 %)
16 diff
(97.9 %id)
BI039032 nervous_tumor HCN1.b-u 105 to 738 657 to 24       634/657
(96 %)
0 diff
(100 %id)
BM717819.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.b-u 323 to 875 1 to 553   tiling clone, also hits gene LEMD1 553/553
(100 %)
0 diff
(100 %id)
BM682352 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.b-u 513 to 1197 692 to 8   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 685/692
(98 %)
0 diff
(100 %id)
BM715980 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.b-u 704 to 1180 5 to 482   fully sequenced,   478/482
(99 %)
6 diff
(98.8 %id)
BM674287 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.b-u 746 to 1192 447 to 1   fully sequenced,   447/447
(100 %)
5 diff
(98.9 %id)
DB551866 hippocampus HCN1.b-u 758 to 1190 1 to 433   AAA Submitted on the opposite strand 433/465
(93 %)
10 diff
(97.9 %id)
BX490817   HCN1.b-u 1046 to 1542 1 to 503   tiling clone,   503/503
(100 %)
6 diff
(98.9 %id)
DA236080 brain HCN1.b-u 1283 to 1876 2 to 595   tiling clone, capped   594/594
(100 %)
2 diff
(99.7 %id)
N99228 multiple sclerosis lesions HCN1.b-u 2283 to 2460 1 to 178   tiling clone,   178/178
(100 %)
1 diff
(99.5 %id)
BX092217 multiple sclerosis lesions HCN1.b-u 2284 to 2897 1 to 615   tiling clone,   615/621
(99 %)
2 diff
(99.7 %id)
N76391 multiple sclerosis lesions HCN1.b-u 2346 to 2559 1 to 214       214/225
(95 %)
2 diff
(99.2 %id)
N55242 multiple sclerosis lesions HCN1.b-u 2365 to 2477 1 to 113       113/113
(100 %)
0 diff
(100 %id)
DB305707 brain HCN1.b-u 2539 to 3081 543 to 1   tiling clone,   543/543
(100 %)
2 diff
(99.7 %id)
G36689   HCN1.b-u 2615 to 3071 456 to 1     Submitted on the opposite strand 456/461
(98 %)
1 diff
(99.8 %id)
N66259 multiple sclerosis lesions HCN1.b-u 2615 to 3071 456 to 1       456/461
(98 %)
1 diff
(99.8 %id)
N68977 multiple sclerosis lesions HCN1.b-u 2625 to 3071 450 to 1       450/451
(99 %)
5 diff
(98.9 %id)
BQ188373 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.b-u 2734 to 3071 1 to 339   fully sequenced, AAA   339/339
(100 %)
1 diff
(99.8 %id)
TI_151732214   HCN1.b-u 2734 to 3071 417 to 80   AAA   338/932
(36 %)
0 diff
(100 %id)
CK299850 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.b-u 2886 to 3071 204 to 19   fully sequenced, AAA   186/186
(100 %)
0 diff
(100 %id)
BQ186189 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.c-u 1 to 501 1 to 501 exact tiling clone, fully sequenced, AAA   501/501
(100 %)
0 diff
(100 %id)
BQ184730 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid HCN1.c-u 256 to 501 264 to 19   fully sequenced, AAA   246/246
(100 %)
0 diff
(100 %id)
DB301248 alzheimer cortex Gene HCN1, variant not shown              
DA140344 alzheimer cortex Gene HCN1, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b-u, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI