cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AA311624 | .a | 914 to 1187 | 1 to 274 | 274/274 (100 %) | 0 diff (100 %id) | ||||
AA369450 | placenta | .a | 3156 to 3356 | 1 to 201 | 201/201 (100 %) | 0 diff (100 %id) | |||
AF434677 | bladder | .a | 315 to 3356 | 1 to 3042 | R748P | AAA | 3042/3042 (100 %) | 2 diff (100.0 %id) | |
AK001068 | whole embryo, mainly head | .a | 1614 to 3356 | 1 to 1743 | available from FLJ, | 1743/1743 (100 %) | 5 diff (99.8 %id) | ||
AK091835 | lung | .b | 1356 to 3333 | 1 to 1978 | D172G | tiling clone, available from FLJ, | 1978/1978 (100 %) | 1 diff (100.0 %id) | |
AK096005 | Kidney | .a | 307 to 2970 | 1 to 2664 | available from FLJ, | 2664/2664 (100 %) | 0 diff (100 %id) | ||
AK292503 | testis | .a | 307 to 3249 | 1 to 2943 | D775N E866D | 2943/2943 (100 %) | 2 diff (100.0 %id) | ||
AK315712 | testis | .a | 289 to 3110 | 1 to 2822 | D11G A134T | 2822/2822 (100 %) | 4 diff (99.9 %id) | ||
AL834465 | melanoma (MeWo cell line) | .a | 320 to 3356 | 11 to 3047 | available from DKFZ, AAA | 3037/3037 (100 %) | 6 diff (99.9 %id) | ||
DA031452 | .a | 303 to 879 | 2 to 578 | capped | 577/577 (100 %) | 2 diff (99.7 %id) | |||
AW854086 | colon | .b | 1766 to 2286 | 532 to 15 | 518/533 (97 %) | 0 diff (100 %id) | |||
AW854164 | colon | .b | 1750 to 2280 | 1 to 529 | 529/529 (100 %) | 7 diff (98.7 %id) | |||
AW854224 | colon | .b | 1846 to 2280 | 435 to 1 | 435/435 (100 %) | 3 diff (99.4 %id) | |||
AW854232 | colon | .b | 1844 to 2280 | 434 to 1 | 434/434 (100 %) | 7 diff (98.4 %id) | |||
AW854235 | colon | .b | 1946 to 2286 | 350 to 10 | 341/350 (97 %) | 0 diff (100 %id) | |||
AW854295 | colon | .b | 1765 to 2286 | 520 to 1 | 520/520 (100 %) | 2 diff (99.7 %id) | |||
AW892102 | nervous_normal | .d-u | 1 to 184 | 185 to 3 | D52V H58Q T59R C60T | tiling clone, | 183/193 (94 %) | 0 diff (100 %id) | |
BC006108 | Muscle, rhabdomyosarcoma | .a | 1 to 3362 | 1 to 3362 | exact | tiling clone, available from MGC, AAA | 3362/3362 (100 %) | 0 diff (100 %id) | |
BE170534 | head_neck | .a | 1624 to 1893 | 279 to 9 | Submitted on the opposite strand | 271/287 (94 %) | 0 diff (100 %id) | ||
BF333480 | colon_ins | .a | 672 to 968 | 297 to 4 | 294/297 (98 %) | 1 diff (99.7 %id) | |||
BI040067 | nervous_tumor | .a | 1681 to 2006 | 32 to 357 | 326/357 (91 %) | 4 diff (98.9 %id) | |||
DA049235 | .a | 308 to 907 | 2 to 602 | capped | 601/601 (100 %) | 2 diff (99.7 %id) | |||
DA084103 | cerebellum | .a | 2066 to 2630 | 2 to 566 | capped | 565/565 (100 %) | 0 diff (100 %id) | ||
DA137078 | alzheimer cortex | .a | 307 to 845 | 2 to 540 | capped | 539/539 (100 %) | 1 diff (99.9 %id) | ||
DA232752 | brain | .a | 305 to 872 | 2 to 569 | capped | 568/568 (100 %) | 2 diff (99.7 %id) | ||
DA269777 | caudate nucleus | .a | 1002 to 1545 | 2 to 546 | capped | 543/545 (99 %) | 1 diff (99.9 %id) | ||
DB306964 | caudate nucleus | .a | 2383 to 2924 | 542 to 1 | 542/542 (100 %) | 0 diff (100 %id) | |||
DA374282 | thalamus | .a | 305 to 850 | 2 to 547 | capped | 546/546 (100 %) | 0 diff (100 %id) | ||
DA385146 | thalamus | .a | 1079 to 1560 | 2 to 483 | capped | 482/482 (100 %) | 0 diff (100 %id) | ||
BX093358 | lung | .a | 2859 to 3261 | 1 to 406 | AAA | 406/406 (100 %) | 4 diff (99.1 %id) | ||
CB266180 | adipose | .a | 319 to 892 | 1 to 574 | 574/574 (100 %) | 8 diff (98.7 %id) | |||
BP216530 | corpus callosum | .a | 286 to 866 | 1 to 583 | 583/583 (100 %) | 12 diff (98.0 %id) | |||
BP216561 | corpus callosum | .a | 286 to 863 | 1 to 579 | 579/579 (100 %) | 19 diff (96.8 %id) | |||
CD693223 | normal nasopharynx | .a | 297 to 775 | 24 to 502 | 479/502 (95 %) | 6 diff (98.9 %id) | |||
CD694224 | normal nasopharynx | .a | 336 to 576 | 23 to 264 | 242/264 (91 %) | 10 diff (96.3 %id) | |||
CN260865 | embryonic stem cells, cell lines H1, H7, andH9 | .a | 360 to 1058 | 1 to 699 | 699/701 (99 %) | 3 diff (99.6 %id) | |||
CN264265 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .a | 677 to 1206 | 41 to 614 | 544/614 (88 %) | 11 diff (98.3 %id) | |||
BX374475 | Neuroblastoma Cot 10-normalized | .a | 326 to 1167 | 1 to 843 | 843/976 (86 %) | 28 diff (97.2 %id) | |||
BX343394 | Neuroblastoma Cot 25-normalized | .a | 2351 to 3341 | 983 to 1 | 983/988 (99 %) | 13 diff (98.7 %id) | |||
BX343395 | Neuroblastoma Cot 25-normalized | .a | 340 to 1381 | 37 to 1068 | 1032/1068 (96 %) | 19 diff (98.3 %id) | |||
DA445811 | tongue, tumor tissue | .a | 306 to 858 | 2 to 555 | capped | 554/554 (100 %) | 2 diff (99.7 %id) | ||
DA452909 | tongue, tumor tissue | .a | 287 to 856 | 2 to 571 | capped | 570/570 (100 %) | 2 diff (99.7 %id) | ||
DA480000 | .a | 309 to 857 | 2 to 551 | capped | 550/550 (100 %) | 2 diff (99.7 %id) | |||
BX472397 | .a | 304 to 564 | 1 to 261 | 261/261 (100 %) | 2 diff (99.3 %id) | ||||
EC458525 | Prostate | .a | 2979 to 3072 | 3 to 96 | 94/96 (97 %) | 7 diff (92.8 %id) | |||
BP231030 | brain | .a | 302 to 867 | 1 to 566 | 566/581 (97 %) | 24 diff (95.9 %id) | |||
DA491640 | brain | .a | 303 to 869 | 2 to 568 | capped | 567/567 (100 %) | 0 diff (100 %id) | ||
DA504375 | brain | .a | 310 to 856 | 2 to 548 | capped | 547/547 (100 %) | 1 diff (99.9 %id) | ||
FN117615 | breast carcinoma | .a | 474 to 574 | 1 to 101 | 101/101 (100 %) | 0 diff (100 %id) | |||
DB457785 | testis | .a | 312 to 816 | 1 to 505 | 505/505 (100 %) | 0 diff (100 %id) | |||
DB463008. matches multiple genes | hippocampus | .a | 289 to 763 | 1 to 476 | also hits gene heneru | 476/476 (100 %) | 2 diff (99.6 %id) | ||
BP235269 | coronary artery | .a | 926 to 1508 | 1 to 583 | 583/583 (100 %) | 0 diff (100 %id) | |||
BP237177 | coronary artery | .a | 297 to 888 | 1 to 592 | 592/592 (100 %) | 0 diff (100 %id) | |||
BP237229 | coronary artery | .a | 297 to 865 | 1 to 569 | 569/599 (94 %) | 21 diff (96.5 %id) | |||
AU119067 | whole embryo, mainly head | .a | 1615 to 2432 | 2 to 817 | capped | 816/818 (99 %) | 5 diff (99.4 %id) | ||
AU145494 | whole embryo, mainly head | .a | 2935 to 3356 | 421 to 1 | 421/573 (73 %) | 3 diff (99.5 %id) | |||
DA586162 | lung | .b | 1357 to 1960 | 2 to 605 | capped | 604/604 (100 %) | 0 diff (100 %id) | ||
DB319417 | lung | .b | 2799 to 3333 | 536 to 1 | 536/536 (100 %) | 1 diff (99.9 %id) | |||
N93868 | lung | .a | 2991 to 3261 | 271 to 1 | fully sequenced, | 271/271 (100 %) | 0 diff (100 %id) | ||
W40359 | lung | .a | 2860 to 3265 | 1 to 407 | fully sequenced, | 407/407 (100 %) | 5 diff (98.8 %id) | ||
AA045286 | uterus | .a | 3042 to 3258 | 234 to 18 | AAA | 217/217 (100 %) | 0 diff (100 %id) | ||
AA046509 | uterus | .a | 2818 to 3011 | 1 to 194 | 194/194 (100 %) | 0 diff (100 %id) | |||
AA742675 | pooled germ cell tumors | .a | 3073 to 3255 | 183 to 1 | 183/183 (100 %) | 0 diff (100 %id) | |||
AA730017 | germinal center B cell | .a | 3052 to 3356 | 321 to 17 | AAA | 305/305 (100 %) | 0 diff (100 %id) | ||
AA806297 | germinal center B cell | .a | 3037 to 3335 | 300 to 1 | 300/300 (100 %) | 17 diff (94.4 %id) | |||
AA912504 | pooled | .a | 3015 to 3255 | 244 to 4 | 241/244 (98 %) | 0 diff (100 %id) | |||
AA934035 | pooled germ cell tumors | .a | 2727 to 3255 | 530 to 1 | 530/533 (99 %) | 2 diff (99.7 %id) | |||
AI251596 | ovary, papillary serous carcinoma | .a | 3014 to 3261 | 8 to 255 | AAA | Submitted on the opposite strand | 248/255 (97 %) | 8 diff (96.9 %id) | |
AI261651 | Kidney | .a | 3498 to 3905 | 408 to 1 | tiling clone, | 408/408 (100 %) | 1 diff (99.8 %id) | ||
AI734013 | Kidney | .a | 3319 to 3906 | 590 to 2 | tiling clone, | 589/590 (99 %) | 0 diff (100 %id) | ||
AI792917 | Kidney | .a | 3039 to 3492 | 1 to 455 | tiling clone, | 455/455 (100 %) | 2 diff (99.6 %id) | ||
AW029308 | poorly differentiated adenocarcinoma withsignet ring cell features, stomach | .a | 2954 to 3357 | 405 to 2 | 404/405 (99 %) | 0 diff (100 %id) | |||
BE298751 | muscle, rhabdomyosarcoma | .a | 21 to 572 | 1 to 552 | 552/552 (100 %) | 2 diff (99.7 %id) | |||
AW407513 | lymph | .a | 365 to 581 | 8 to 224 | 217/224 (96 %) | 7 diff (96.9 %id) | |||
CF138455 | lymph | .b | 960 to 1365 | 1 to 406 | 406/406 (100 %) | 4 diff (99.1 %id) | |||
BF056898 | pooled germ cell tumors | .b | 584 to 1096 | 514 to 1 | 514/514 (100 %) | 4 diff (99.3 %id) | |||
BE563336 | adenocarcinoma, Pancreas | .a | 1803 to 2670 | 1 to 880 | 878/884 (99 %) | 38 diff (95.8 %id) | |||
BE778168 | eye, retinoblastoma | .a | 330 to 1111 | 1 to 782 | 782/782 (100 %) | 25 diff (96.9 %id) | |||
BI090433 | cervix | .a | 1462 to 1971 | 1 to 511 | 511/511 (100 %) | 7 diff (98.7 %id) | |||
BI769966 | pooled lung and spleen | .c | 15 to 766 | 1 to 750 | tiling clone, | 750/750 (100 %) | 5 diff (99.4 %id) | ||
BI547705 | brain, hippocampus | .a | 281 to 1055 | 1 to 807 | 650/990 (65 %) | 48 diff (95.2 %id) | |||
BU078200 | Pancreas, Purified pancreatic islet | .a | 385 to 881 | 1 to 497 | 497/497 (100 %) | 6 diff (98.8 %id) | |||
BQ437976 | melanotic melanoma, skin | .a | 2155 to 2941 | 1 to 787 | 787/936 (84 %) | 12 diff (98.8 %id) | |||
BU189801 | leiomyosarcoma, uterus | .a | 1329 to 2088 | 12 to 770 | 759/869 (87 %) | 19 diff (97.9 %id) | |||
BU932864 | mixed (pool of 40 RNAs) | .a | 1752 to 2553 | 1 to 806 | 806/807 (99 %) | 18 diff (97.8 %id) | |||
CX164433 | human embryonic stem cells differentiated toan early endodermal cell type | .a | 332 to 1101 | 1 to 770 | 770/770 (100 %) | 0 diff (100 %id) | |||
TI_57183390 | .c | -9 to 766 | 58 to 832 | G66A S67Q E69K G70D W71G ... | tiling clone, | 775/832 (93 %) | 15 diff (98.2 %id) | ||
TI_44169064 | .a | 283 to 1055 | 56 to 860 | 648/1043 (62 %) | 50 diff (95.3 %id) | ||||
BP278681 | .a | 300 to 882 | 1 to 583 | 583/583 (100 %) | 3 diff (99.5 %id) | ||||
BP279362 | .a | 2317 to 2898 | 1 to 582 | 582/582 (100 %) | 2 diff (99.7 %id) | ||||
DA621896 | Kidney | .a | 308 to 850 | 2 to 544 | capped | 543/543 (100 %) | 0 diff (100 %id) | ||
DB320437 | Kidney | .a | 2519 to 2970 | 452 to 1 | 452/459 (98 %) | 0 diff (100 %id) | |||
BP281177 | bone marrow | .a | 312 to 895 | 1 to 584 | 584/584 (100 %) | 0 diff (100 %id) | |||
NM_018025.2 | .a | 1 to 3362 | 1 to 3362 | exact | RefSeq, AAA | 3362/3362 (100 %) | 0 diff (100 %id) | ||
AV749507 | Pituitary | .a | 2991 to 3357 | 1 to 366 | 366/388 (94 %) | 3 diff (99.3 %id) | |||
BP310170 | brain | .a | 1364 to 1946 | 1 to 583 | 583/583 (100 %) | 3 diff (99.5 %id) | |||
DA771204 | brain | .a | 306 to 872 | 2 to 569 | capped | 568/568 (100 %) | 2 diff (99.7 %id) | ||
DA775264 | brain | .a | 308 to 877 | 2 to 572 | capped | 571/571 (100 %) | 1 diff (99.9 %id) | ||
DA775894 | brain | .a | 303 to 865 | 2 to 565 | capped | 564/564 (100 %) | 1 diff (99.9 %id) | ||
BP314673 | mammary gland | .a | 301 to 883 | 1 to 583 | 583/583 (100 %) | 3 diff (99.5 %id) | |||
BP326361 | prostata | .b | 1 to 584 | 1 to 584 | tiling clone, | 584/584 (100 %) | 1 diff (99.9 %id) | ||
CR997325 | T-Lymphocytes | .a | 1794 to 2496 | 1 to 704 | 704/704 (100 %) | 2 diff (99.8 %id) | |||
BM738496 | Ascites, stomach | .a | 2386 to 2960 | 1 to 575 | 575/575 (100 %) | 8 diff (98.7 %id) | |||
BP336251 | coronary artery | .a | 1316 to 1891 | 1 to 575 | 575/575 (100 %) | 2 diff (99.7 %id) | |||
BP337479 | coronary artery | .b | 446 to 1030 | 1 to 585 | tiling clone, | 585/590 (99 %) | 2 diff (99.7 %id) | ||
DN992070 | brain, whole brain | .a | 234 to 844 | 7 to 617 | 611/617 (99 %) | 6 diff (99.1 %id) | |||
BP357357 | mammary gland | .a | 483 to 1063 | 1 to 582 | 582/582 (100 %) | 6 diff (99.0 %id) | |||
DB077922 | testis | .a | 308 to 872 | 2 to 567 | capped | 566/566 (100 %) | 1 diff (99.9 %id) | ||
DB079215 | testis | .a | 290 to 856 | 2 to 568 | capped | 567/567 (100 %) | 2 diff (99.7 %id) | ||
DB091265 | testis | .a | 987 to 1550 | 2 to 565 | capped | 564/564 (100 %) | 0 diff (100 %id) | ||
DB113362 | thymus | .a | 303 to 885 | 2 to 584 | capped | 583/583 (100 %) | 0 diff (100 %id) | ||
BP365650 | lung | .a | 302 to 881 | 1 to 583 | 580/583 (99 %) | 4 diff (99.4 %id) | |||
TI_154145843 | .a | 365 to 864 | 79 to 579 | AAA | 501/821 (61 %) | 28 diff (96.6 %id) | |||
TI_154147091 | .a | 365 to 775 | 88 to 498 | 411/411 (100 %) | 1 diff (99.8 %id) | ||||
TI_154168369 | .b | 967 to 1501 | 80 to 614 | tiling clone, | 535/536 (99 %) | 9 diff (98.4 %id) | |||
CA449973 | Human Lung Epithelial cells, lung | .a | 2963 to 3356 | 412 to 19 | AAA | 394/400 (98 %) | 0 diff (100 %id) | ||
BM666246 | eye, fetal eyes | .a | 2717 to 3356 | 658 to 19 | AAA | 640/640 (100 %) | 1 diff (99.9 %id) | ||
BM711263 | eye, fetal eyes | .a | 1830 to 2194 | 1 to 365 | 365/365 (100 %) | 0 diff (100 %id) | |||
BQ447354 | Knee, Osteoarthritic Cartilage | .a | 2672 to 3255 | 600 to 17 | AAA | 584/584 (100 %) | 2 diff (99.7 %id) | ||
CA430683 | cell lines, Chondrosarcoma | .a | 1848 to 2444 | 723 to 129 | AAA | 595/705 (84 %) | 6 diff (99.2 %id) | ||
BU633977 | cell lines, Chondrosarcoma | .a | 1907 to 2444 | 666 to 129 | AAA | 538/648 (83 %) | 2 diff (99.7 %id) | ||
BU634212 | cell lines, Chondrosarcoma | .a | 2599 to 3273 | 692 to 19 | AAA | 674/674 (100 %) | 2 diff (99.8 %id) | ||
CD370445 | Alveolar Macrophage, lung | .a | 2215 to 2932 | 726 to 8 | AAA | Internal priming: the 3' end of the oligo dT primed clone lies in the CDS | 719/726 (99 %) | 3 diff (99.6 %id) | |
BP375511 | uterus | .a | 1427 to 2008 | 1 to 582 | 582/582 (100 %) | 5 diff (99.2 %id) | |||
BE563606 | adenocarcinoma, Pancreas | .a | 365 to 775 | 88 to 498 | This clone was ignored | 411/411 (100 %) | 1 diff (99.8 %id) | ||
BP286682 | lung | .b | 967 to 1501 | 80 to 614 | tiling clone, | This clone was ignored | 535/536 (99 %) | 9 diff (98.4 %id) | |
BM679113 | eye, fetal eye | .a | 2963 to 3356 | 412 to 19 | fully sequenced, AAA | Suspected internal deletion, this clone was ignored | 394/400 (98 %) | 0 diff (100 %id) | |
BM722179 | eye, fetal eye | .a | 2963 to 3356 | 412 to 19 | fully sequenced, | Suspected internal deletion, this clone was ignored | 394/400 (98 %) | 0 diff (100 %id) | |
BM666246 | eye, fetal eyes | .a | 2717 to 3356 | 658 to 19 | AAA | 640/640 (100 %) | 1 diff (99.9 %id) | ||
BM666246 | eye, fetal eyes | .a | 2717 to 3356 | 658 to 19 | AAA | 640/640 (100 %) | 1 diff (99.9 %id) | ||
BM711263 | eye, fetal eyes | .a | 1830 to 2194 | 1 to 365 | 365/365 (100 %) | 0 diff (100 %id) | |||
BM711263 | eye, fetal eyes | .a | 1830 to 2194 | 1 to 365 | 365/365 (100 %) | 0 diff (100 %id) | |||
BQ447354 | Knee, Osteoarthritic Cartilage | .a | 2672 to 3255 | 600 to 17 | AAA | 584/584 (100 %) | 2 diff (99.7 %id) | ||
BQ447354 | Knee, Osteoarthritic Cartilage | .a | 2672 to 3255 | 600 to 17 | AAA | 584/584 (100 %) | 2 diff (99.7 %id) | ||
CA430683 | cell lines, Chondrosarcoma | .a | 1848 to 2444 | 723 to 129 | AAA | 595/705 (84 %) | 6 diff (99.2 %id) | ||
CA430683 | cell lines, Chondrosarcoma | .a | 1848 to 2444 | 723 to 129 | AAA | 595/705 (84 %) | 6 diff (99.2 %id) | ||
BU633977 | cell lines, Chondrosarcoma | .a | 1907 to 2444 | 666 to 129 | AAA | 538/648 (83 %) | 2 diff (99.7 %id) | ||
BU633977 | cell lines, Chondrosarcoma | .a | 1907 to 2444 | 666 to 129 | AAA | 538/648 (83 %) | 2 diff (99.7 %id) | ||
BU634212 | cell lines, Chondrosarcoma | .a | 2599 to 3273 | 692 to 19 | AAA | 674/674 (100 %) | 2 diff (99.8 %id) | ||
BU634212 | cell lines, Chondrosarcoma | .a | 2599 to 3273 | 692 to 19 | AAA | 674/674 (100 %) | 2 diff (99.8 %id) | ||
CD370445 | Alveolar Macrophage, lung | .a | 2215 to 2932 | 726 to 8 | AAA | Internal priming: the 3' end of the oligo dT primed clone lies in the CDS | 719/726 (99 %) | 3 diff (99.6 %id) | |
CD370445 | Alveolar Macrophage, lung | .a | 2215 to 2932 | 726 to 8 | AAA | Internal priming: the 3' end of the oligo dT primed clone lies in the CDS | 719/726 (99 %) | 3 diff (99.6 %id) | |
BP375511 | uterus | .a | 1427 to 2008 | 1 to 582 | 582/582 (100 %) | 5 diff (99.2 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |