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Gene CCDC47TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
234 representative clones for gene CCDC47 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK075387   .a 1 to 2195 1 to 2195 exact tiling clone,   2195/2195
(100 %)
2 diff
(100.0 %id)
DA343543 substantia nigra .b 1 to 556 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
NM_020198.2   .b 47 to 3464 1 to 3418 exact RefSeq, AAA   3418/3418
(100 %)
0 diff
(100 %id)
DB222124 trachea .b 48 to 621 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA305039 hippocampus .b 63 to 496 2 to 435   capped   434/434
(100 %)
0 diff
(100 %id)
DA910461   .b 63 to 617 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CN428723 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 91 to 780 1 to 690   tiling clone,   690/690
(100 %)
0 diff
(100 %id)
CX753288 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 128 to 860 1 to 725     Submitted on the opposite strand 725/846
(85 %)
10 diff
(98.9 %id)
DA267344 caudate nucleus .b 155 to 709 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA010563 adrenal gland .b 169 to 725 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA668526 esophagus .b 170 to 738 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA750180   .b 170 to 703 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB037903 testis .b 170 to 683 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
DB224881 trachea .b 170 to 745 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BX426692 fetal liver, Liver .b 171 to 1093 1 to 924       924/924
(100 %)
6 diff
(99.4 %id)
BX427215 fetal liver, Liver .b 171 to 1206 19 to 1048       1030/1061
(97 %)
20 diff
(98.2 %id)
DA766758 tongue .b 172 to 732 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA936913 Spleen .b 172 to 705 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA960308 Spleen .b 172 to 747 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB242195 stomach, tumor tissue .b 172 to 734 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA046233 bladder .b 177 to 733 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA666586   .b 177 to 741 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA761113 tongue .b 177 to 698 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DB074740 testis .b 177 to 693 2 to 518   capped   517/517
(100 %)
0 diff
(100 %id)
AK225813 heart .b 178 to 3460 1 to 3284 K189R E190S A191H T192K S193H ... tiling clone,   3284/3284
(100 %)
4 diff
(99.9 %id)
DA128962 cerebellum .b 179 to 693 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA180444 amygdala .b 179 to 732 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA566012 heart .b 179 to 751 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA824186 pericardium .b 179 to 709 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DB169103 kidney, tumor tissue .b 179 to 747 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB198520 trachea .b 179 to 709 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
TI_57165964   .b 181 to 984 24 to 829       806/830
(97 %)
16 diff
(98.1 %id)
DA157873 amygdala .b 182 to 750 9 to 577   capped   569/569
(100 %)
0 diff
(100 %id)
AL547109 placenta, Placenta Cot 25-normalized .b 189 to 1218 1 to 1020       1022/1020
(100 %)
13 diff
(98.8 %id)
BI835790 pooled pancreas and spleen .b 189 to 984 1 to 798       798/799
(99 %)
11 diff
(98.7 %id)
BM471156 melanotic melanoma, skin .b 191 to 1113 1 to 936       936/1027
(91 %)
19 diff
(98.2 %id)
AK314328 placenta .b 193 to 1834 1 to 1643 exact     1643/1643
(100 %)
1 diff
(100.0 %id)
DA957152 Spleen .b 194 to 745 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP871318 embryonal kidney .b 197 to 528 1 to 332       332/332
(100 %)
0 diff
(100 %id)
BP196576 adrenal gland .b 197 to 779 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CV574745 cornea, eye .b 197 to 828 1 to 632       632/632
(100 %)
0 diff
(100 %id)
DA017267 adrenal gland .b 198 to 709 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
AF226054 liver cancer tissue .b 199 to 3464 1 to 3267 E464A Q465K AAA   3267/3267
(100 %)
5 diff
(99.9 %id)
DA342403 substantia nigra .b 200 to 768 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA491110 brain .b 200 to 768 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BU181242 embryonal carcinoma, cell line, testis .b 201 to 1006 1 to 809       809/848
(95 %)
10 diff
(98.9 %id)
DA030145   .b 202 to 760 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA704919   .b 202 to 682 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
DA348781 substantia nigra .b 203 to 703 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
BX405304 T cells (Jurkat cell line) .b 203 to 1217 1 to 1008       1008/1015
(99 %)
12 diff
(98.9 %id)
DA903404   .b 203 to 709 2 to 508   capped   507/507
(100 %)
0 diff
(100 %id)
DB211808 trachea .b 203 to 682 2 to 481   capped   480/480
(100 %)
0 diff
(100 %id)
DA023479   .b 204 to 769 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA277645 corpus callosum .b 205 to 760 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BJ992863 hepatoblastoma .b 206 to 625 1 to 420       420/420
(100 %)
0 diff
(100 %id)
CB141732 Liver .b 206 to 851 1 to 646       646/646
(100 %)
0 diff
(100 %id)
DA858723 placenta .b 206 to 768 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA834731 placenta .b 207 to 773 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BX445740 T cells (Jurkat cell line) .b 208 to 1053 1 to 856       856/856
(100 %)
17 diff
(98.1 %id)
DA887895   .b 212 to 764 2 to 554   capped   553/554
(99 %)
0 diff
(100 %id)
BU156200 melanotic melanoma, skin .b 213 to 1053 22 to 870       849/887
(95 %)
26 diff
(97.1 %id)
TI_154181458   .b 213 to 1074 70 to 926       857/982
(87 %)
20 diff
(98.0 %id)
AL552204 placenta, Placenta Cot 25-normalized .b 215 to 1113 1 to 898       898/898
(100 %)
3 diff
(99.7 %id)
AK027844 placenta .b 218 to 2351 1 to 2134 exact tiling clone, available from FLJ,   2134/2134
(100 %)
0 diff
(100 %id)
DR760459 embryonic stem .b 219 to 1033 1 to 815       815/815
(100 %)
0 diff
(100 %id)
DA905543   .b 219 to 768 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB111119 thymus .b 219 to 802 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA405512 thalamus .b 220 to 781 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CN428729 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 220 to 514 1 to 295       295/295
(100 %)
0 diff
(100 %id)
DA193525 amygdala .b 223 to 795 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA286081 corpus callosum .b 223 to 715 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
BC008905 Lymph, Burkitt lymphoma .b 225 to 2308 1 to 2084 exact available from MGC, AAA   2084/2084
(100 %)
1 diff
(100.0 %id)
DB228892 trachea .b 225 to 799 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
CA455093   .b 226 to 1112 1 to 894       894/895
(99 %)
9 diff
(99.0 %id)
DB100513 testis .b 227 to 831 2 to 606   capped   605/605
(100 %)
1 diff
(99.9 %id)
DA458563 tongue, tumor tissue .b 228 to 795 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB094985 testis .b 228 to 819 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
CN428732 embryonic stem cells, cell lines H1, H7, andH9 .b 229 to 923 1 to 695       695/695
(100 %)
0 diff
(100 %id)
AA306855   .b 230 to 624 1 to 395       395/395
(100 %)
0 diff
(100 %id)
BM547807 brain, hippocampus .b 230 to 1218 1 to 990       990/1073
(92 %)
24 diff
(97.8 %id)
CN428737 embryonic stem cells, cell lines H1, H7, andH9 .b 251 to 866 1 to 616       616/616
(100 %)
0 diff
(100 %id)
DA138914 alzheimer cortex .b 253 to 790 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BP226610   .b 261 to 842 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA134453 alzheimer cortex .b 262 to 811 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA870789 Prostate .b 262 to 788 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DB079809 testis .b 262 to 773 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA884563   .b 268 to 834 12 to 578   capped   567/567
(100 %)
0 diff
(100 %id)
CV810890 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 272 to 990 1 to 719       719/719
(100 %)
3 diff
(99.6 %id)
TI_1948080302   .b 375 to 1148 120 to 893   fully sequenced,   774/893
(86 %)
0 diff
(100 %id)
TI_1948080468   .b 375 to 1184 130 to 939   fully sequenced,   810/939
(86 %)
3 diff
(99.7 %id)
TI_1948080644   .b 375 to 1148 126 to 899   fully sequenced,   774/899
(86 %)
1 diff
(99.9 %id)
TI_1948080820   .b 375 to 1100 126 to 851   fully sequenced,   726/851
(85 %)
1 diff
(99.9 %id)
CV027194 mixed .b 383 to 1032 1 to 650       650/650
(100 %)
0 diff
(100 %id)
CN428728 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 400 to 881 1 to 482       482/482
(100 %)
0 diff
(100 %id)
BU189253 melanotic melanoma, skin .b 455 to 1329 1 to 882       882/891
(98 %)
7 diff
(99.3 %id)
BP257410 heart .b 479 to 1064 1 to 586       586/586
(100 %)
0 diff
(100 %id)
FN085461 breast carcinoma .b 499 to 569 71 to 1     Submitted on the opposite strand 71/71
(100 %)
0 diff
(100 %id)
AA304943 colon .b 505 to 968 1 to 464       464/464
(100 %)
0 diff
(100 %id)
BU929924 placenta .b 587 to 1364 1 to 780       780/780
(100 %)
4 diff
(99.5 %id)
CD358389 testis .b 600 to 1459 30 to 890       861/891
(96 %)
7 diff
(99.3 %id)
CB143819 Liver .b 605 to 1037 1 to 433       433/433
(100 %)
0 diff
(100 %id)
BP349021 brain .b 627 to 1208 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AF113221 heart .b 701 to 2293 1 to 1594   AAA   1594/1594
(100 %)
2 diff
(99.9 %id)
DA488291 brain .b 732 to 1294 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BC013600 Ovary, adenocarcinoma .b 756 to 2360 1 to 1605   available from MGC, AAA   1605/1605
(100 %)
1 diff
(100.0 %id)
BM705227 eye, RPE and Choroid .b 758 to 1172 1 to 415       415/415
(100 %)
0 diff
(100 %id)
AA122425 colon, tumor .b 762 to 1136 1 to 376       376/376
(100 %)
1 diff
(99.8 %id)
BM128749 Islets of Langerhans, Pancreas .b 885 to 1462 1 to 578       578/578
(100 %)
0 diff
(100 %id)
TI_154179454   .b 930 to 1766 72 to 908       837/838
(99 %)
8 diff
(99.1 %id)
TI_154179487   .b 930 to 1747 76 to 888       813/814
(99 %)
14 diff
(98.3 %id)
TI_154179542   .b 930 to 1752 73 to 897       825/829
(99 %)
11 diff
(98.7 %id)
F05504 brain, total brain .b 936 to 1207 1 to 272       272/272
(100 %)
0 diff
(100 %id)
Z44330 brain, total brain .b 936 to 1307 1 to 372       372/372
(100 %)
0 diff
(100 %id)
BU145886 dorsal root ganglia .b 936 to 1851 1 to 927       925/930
(99 %)
23 diff
(97.6 %id)
BF744099 breast .b 971 to 1328 364 to 8     Submitted on the opposite strand 357/364
(98 %)
1 diff
(99.8 %id)
AW378643 head_neck .b 1009 to 1568 560 to 1       560/560
(100 %)
0 diff
(100 %id)
BF349860 head_neck .b 1019 to 1561 545 to 4       542/547
(99 %)
3 diff
(99.5 %id)
BE315444 adenocarcinoma cell line, ovary .b 1024 to 1453 1 to 430       430/430
(100 %)
0 diff
(100 %id)
TI_1948080821   .b 1070 to 1833 890 to 127   fully sequenced,   764/890
(85 %)
3 diff
(99.7 %id)
BQ327449 kidney_tumor .b 1078 to 1475 474 to 75       400/474
(84 %)
11 diff
(97.7 %id)
TI_1948080303   .b 1087 to 1833 874 to 129   fully sequenced,   746/874
(85 %)
0 diff
(100 %id)
TI_1948080645   .b 1087 to 1833 872 to 127   fully sequenced,   746/872
(85 %)
0 diff
(100 %id)
BF834093 head_neck .b 1092 to 1586 511 to 20     Submitted on the opposite strand 492/511
(96 %)
2 diff
(99.7 %id)
AL119024 amygdala .b 1098 to 1448 1 to 351       351/351
(100 %)
0 diff
(100 %id)
BF377200 testis_normal .b 1140 to 1327 197 to 10       188/197
(95 %)
2 diff
(99.0 %id)
BG624057 placenta .b 1145 to 1950 1 to 822       822/826
(99 %)
26 diff
(96.9 %id)
TI_1948080469   .b 1154 to 1833 805 to 127   fully sequenced,   679/805
(84 %)
0 diff
(100 %id)
BF086970 head_neck .b 1186 to 1586 436 to 36       401/436
(91 %)
0 diff
(100 %id)
BE931730 head_neck .b 1193 to 1475 307 to 28       280/307
(91 %)
7 diff
(97.8 %id)
BX427214 fetal liver, Liver .b 1219 to 2296 1076 to 1       1076/1163
(92 %)
10 diff
(99.2 %id)
CD103387 Pooled-Skin .b 1219 to 1928 9 to 724       716/725
(98 %)
10 diff
(98.7 %id)
BI051882 placenta_normal .b 1226 to 1685 463 to 5       459/463
(99 %)
4 diff
(99.2 %id)
BG740061 skin .b 1226 to 2051 1 to 825       825/825
(100 %)
10 diff
(98.8 %id)
BG002410 placenta_normal .b 1236 to 1558 322 to 2       321/322
(99 %)
0 diff
(100 %id)
BX445739 T cells (Jurkat cell line) .b 1238 to 2309 1071 to 1       1071/1073
(99 %)
38 diff
(96.5 %id)
CD678691 eye, Trabecular meshwork .b 1262 to 1897 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
BG576553 breast, mammary adenocarcinoma, cell line .b 1291 to 1891 1 to 601       601/601
(100 %)
0 diff
(100 %id)
BP250954 hippocampus .b 1314 to 1895 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BX426691 fetal liver, Liver .b 1332 to 2278 947 to 1       947/947
(100 %)
3 diff
(99.7 %id)
BX405303 T cells (Jurkat cell line) .b 1338 to 2307 964 to 1       964/967
(99 %)
23 diff
(97.7 %id)
BU150517 dorsal root ganglia .b 1363 to 2226 25 to 903       879/944
(93 %)
27 diff
(97.2 %id)
CV572390 cornea, eye .b 1412 to 2031 1 to 620       620/620
(100 %)
0 diff
(100 %id)
CV572207 cornea, eye .b 1417 to 2030 1 to 614       614/614
(100 %)
0 diff
(100 %id)
AU253497 neuroblastoma .b 1419 to 2099 1 to 682       682/682
(100 %)
11 diff
(98.4 %id)
CN428734 embryonic stem cells, DMSO-treated H9 cellline .b 1435 to 1834 1 to 400       400/400
(100 %)
0 diff
(100 %id)
BE072769 breast .b 1447 to 1960 514 to 1     Submitted on the opposite strand 514/514
(100 %)
5 diff
(99.1 %id)
CD359294 testis .b 1460 to 2312 1 to 860       860/867
(99 %)
15 diff
(98.3 %id)
TI_149297847   .b 1475 to 2311 924 to 93   AAA   832/970
(85 %)
8 diff
(99.2 %id)
TI_149302770   .b 1491 to 2312 901 to 88   AAA   814/958
(84 %)
15 diff
(98.5 %id)
TI_149295447   .b 1494 to 2311 898 to 90   AAA   809/809
(100 %)
20 diff
(97.6 %id)
EC502051 Prostate .b 1524 to 1633 1 to 110       110/110
(100 %)
0 diff
(100 %id)
TI_151750084   .b 1538 to 2312 867 to 98   AAA   770/1143
(67 %)
27 diff
(97.7 %id)
BX371864 Placenta Cot 25-normalized .b 1599 to 2531 942 to 11       932/942
(98 %)
2 diff
(99.8 %id)
AW386169 pnet .b 1609 to 2173 571 to 6       566/571
(99 %)
12 diff
(97.9 %id)
BU622717 cell lines, Chondrosarcoma .b 1642 to 2312 688 to 19   AAA   670/670
(100 %)
1 diff
(99.9 %id)
CN428725 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1704 to 2223 1 to 520       520/520
(100 %)
0 diff
(100 %id)
CN428731 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1720 to 2220 1 to 501       501/501
(100 %)
0 diff
(100 %id)
BU736802 eye, RPE and Choroid .b 1733 to 2312 598 to 19   AAA   580/580
(100 %)
0 diff
(100 %id)
BM128499 Islets of Langerhans, Pancreas .b 1773 to 2312 564 to 25   AAA   540/540
(100 %)
5 diff
(99.1 %id)
BM724878 eye, fetal eye .b 1779 to 2551 1 to 773       773/773
(100 %)
8 diff
(99.0 %id)
AI752573 Bone, Hip .b 1823 to 2269 454 to 8       447/454
(98 %)
0 diff
(100 %id)
AA767726 germinal center B cell .b 1840 to 2344 523 to 19   AAA   505/505
(100 %)
0 diff
(100 %id)
AW601974 breast .b 1878 to 2254 376 to 1       376/376
(100 %)
12 diff
(96.9 %id)
AW662398 colon, moderately-differentiated adenocarcinoma .b 1880 to 2311 432 to 1       432/432
(100 %)
0 diff
(100 %id)
AA121127 colon, tumor .b 1884 to 2312 434 to 5       430/434
(99 %)
0 diff
(100 %id)
FN144634 breast carcinoma .b 1965 to 2035 1 to 71       71/71
(100 %)
0 diff
(100 %id)
Z41685 brain, total brain .b 2100 to 2308 209 to 1       209/209
(100 %)
0 diff
(100 %id)
BG911123 anaplastic oligodendroglioma with 1p/19qloss, brain .b 2105 to 2959 1 to 854       854/874
(97 %)
25 diff
(97.2 %id)
BG678977 skin, squamous cell carcinoma .b 2117 to 2978 1 to 859       859/860
(99 %)
13 diff
(98.5 %id)
BM967107 Islets of Langerhans, Pancreas .b 2133 to 2698 1 to 566       566/566
(100 %)
0 diff
(100 %id)
FN052340 breast carcinoma .b 2142 to 2254 113 to 1     Submitted on the opposite strand 113/113
(100 %)
0 diff
(100 %id)
DN602307 human embryonic stem cells .b 2154 to 2998 1 to 843       843/843
(100 %)
2 diff
(99.8 %id)
AA932719 carcinoid, lung .b 2207 to 2349 143 to 1       143/143
(100 %)
0 diff
(100 %id)
BM741921 Ascites, stomach .b 2236 to 2859 1 to 624       624/624
(100 %)
0 diff
(100 %id)
BM757001 Ascites, stomach .b 2236 to 2656 1 to 421       421/421
(100 %)
0 diff
(100 %id)
BF890807 marrow .b 2259 to 2553 293 to 1     Submitted on the opposite strand 293/293
(100 %)
11 diff
(96.3 %id)
AL575693 placenta, Placenta Cot 25-normalized .b 2284 to 3239 957 to 1       957/957
(100 %)
13 diff
(98.7 %id)
CD671881 eye, Iris .b 2313 to 2908 1 to 596       596/596
(100 %)
0 diff
(100 %id)
BC001300 Placenta, choriocarcinoma .b 2381 to 3456 1 to 1076   available from MGC, AAA   1076/1076
(100 %)
1 diff
(100.0 %id)
AL572190 placenta, Placenta Cot 25-normalized .b 2401 to 3435 1025 to 1       1025/1067
(96 %)
16 diff
(98.6 %id)
FN172984 breast carcinoma .b 2404 to 2504 1 to 101       101/101
(100 %)
0 diff
(100 %id)
FN171210 breast carcinoma .b 2406 to 2509 102 to 3     Submitted on the opposite strand 100/102
(98 %)
0 diff
(100 %id)
FN138251 breast carcinoma .b 2511 to 2620 108 to 1     Submitted on the opposite strand 108/108
(100 %)
6 diff
(94.5 %id)
TI_154048250   .b 2571 to 3464 961 to 87   AAA   875/1016
(86 %)
24 diff
(97.7 %id)
CA867684 Pancreas, Purified pancreatic islet .b 2593 to 2952 6 to 365   fully sequenced,   360/365
(98 %)
5 diff
(98.7 %id)
BQ776799 Pancreas, Purified pancreatic islet .b 2595 to 2951 1 to 359   fully sequenced,   359/359
(100 %)
3 diff
(99.2 %id)
BF510976   .b 2621 to 3244 639 to 16   AAA   624/633
(98 %)
1 diff
(99.9 %id)
FN144577 breast carcinoma .b 2658 to 2748 1 to 91       91/91
(100 %)
0 diff
(100 %id)
AI952060 lung, two pooled squamous cell carcinomas .b 2679 to 3244 566 to 1       566/566
(100 %)
0 diff
(100 %id)
BM680113 eye, fetal eye .b 2752 to 3456 723 to 19   AAA   705/705
(100 %)
1 diff
(99.9 %id)
AU253498 neuroblastoma .b 2754 to 3458 697 to 1       697/700
(99 %)
23 diff
(96.8 %id)
AW272230 colon, moderately-differentiated adenocarcinoma .b 2835 to 3266 432 to 1       432/432
(100 %)
0 diff
(100 %id)
AA452951   .b 2908 to 3255 1 to 347   fully sequenced,   347/347
(100 %)
2 diff
(99.5 %id)
BY999267   .b 2921 to 3048 1 to 128     Submitted on the opposite strand 128/129
(99 %)
1 diff
(99.3 %id)
BQ776486 Pancreas, Purified pancreatic islet .b 2921 to 3455 535 to 1   fully sequenced,   535/535
(100 %)
0 diff
(100 %id)
CA867403 Pancreas, Purified pancreatic islet .b 2922 to 3455 534 to 1   fully sequenced,   534/534
(100 %)
0 diff
(100 %id)
AV749526 Pituitary .b 2945 to 3430 482 to 1     Submitted on the opposite strand 482/493
(97 %)
2 diff
(99.6 %id)
BM701892 eye, optic nerve .b 2951 to 3453 1 to 503       503/503
(100 %)
0 diff
(100 %id)
BE858150 brain, glioblastoma (pooled) .b 2952 to 3456 505 to 1       505/505
(100 %)
0 diff
(100 %id)
AA773575 lung, lung carcinoma .b 2958 to 3457 500 to 1       500/500
(100 %)
0 diff
(100 %id)
CD518357 White Matter .b 2992 to 3456 1 to 465       465/466
(99 %)
1 diff
(99.8 %id)
AI215110 pooled .b 2994 to 3455 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AW468710 pooled .b 2999 to 3455 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AW977732   .b 3000 to 3454 457 to 3     Submitted on the opposite strand 455/458
(99 %)
0 diff
(100 %id)
AA677490 liver and spleen .b 3012 to 3454 443 to 1       443/443
(100 %)
0 diff
(100 %id)
DB540566 hippocampus .b 3020 to 3456 1 to 437     Submitted on the opposite strand 437/437
(100 %)
0 diff
(100 %id)
AW168300 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 3020 to 3458 439 to 1       439/439
(100 %)
0 diff
(100 %id)
AW268724 pooled .b 3020 to 3455 436 to 1       436/436
(100 %)
0 diff
(100 %id)
AI214625 carcinoid, lung .b 3021 to 3456 436 to 1       436/436
(100 %)
0 diff
(100 %id)
AI140739 parathyroid gland, parathyroid tumor .b 3030 to 3352 323 to 1       323/323
(100 %)
0 diff
(100 %id)
BG115143 duodenal adenocarcinoma, cell line, small intestine .b 3031 to 3252 1 to 222       222/222
(100 %)
0 diff
(100 %id)
AI214614 carcinoid, lung .b 3049 to 3456 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BP423119 small intestine .b 3050 to 3460 1 to 411     Submitted on the opposite strand 411/411
(100 %)
0 diff
(100 %id)
AI435966 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3053 to 3439 1 to 387     Submitted on the opposite strand 387/387
(100 %)
0 diff
(100 %id)
FN082096 breast carcinoma .b 3075 to 3176 102 to 1     Submitted on the opposite strand 102/102
(100 %)
0 diff
(100 %id)
AW118902 pooled .b 3095 to 3459 365 to 1       365/365
(100 %)
0 diff
(100 %id)
AA620891   .b 3103 to 3432 330 to 1       330/330
(100 %)
0 diff
(100 %id)
AA758804   .b 3109 to 3467 361 to 3   tiling clone,   359/361
(99 %)
0 diff
(100 %id)
AI086188 liver and spleen .b 3113 to 3464 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AA452813   .b 3225 to 3456 231 to 1   fully sequenced,   231/231
(100 %)
0 diff
(100 %id)
EC491677 Prostate .b 3284 to 3413 1 to 130       130/130
(100 %)
0 diff
(100 %id)
AA934532 metastatic prostate bone lesion .b 3300 to 3440 141 to 1       141/146
(96 %)
1 diff
(99.4 %id)
AI248845 liver and spleen .b 3305 to 3456 152 to 1       152/152
(100 %)
0 diff
(100 %id)
DA738007   .b 3315 to 3456 2 to 143   fully sequenced, capped   142/142
(100 %)
0 diff
(100 %id)
DB370620   .b 3370 to 3456 87 to 1   fully sequenced,   87/87
(100 %)
0 diff
(100 %id)
AK027786 placenta .c 1 to 1719 1 to 1719 exact tiling clone, available from FLJ,   1719/1719
(100 %)
1 diff
(100.0 %id)
DA829566 placenta .c 2 to 765 2 to 775   capped   774/795
(97 %)
10 diff
(98.8 %id)
CA425886 cell lines, Chondrosarcoma .c 934 to 1720 805 to 19   tiling clone, AAA   787/787
(100 %)
4 diff
(99.5 %id)
DB374443 placenta .c 1384 to 1719 336 to 1       336/336
(100 %)
2 diff
(99.5 %id)
DB055311 testis .d 1 to 551 2 to 553 R20X K21E I22N R23K Y24I ... tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
BX482473   .e 1 to 693 35 to 726 D109* tiling clone,   692/726
(95 %)
2 diff
(99.8 %id)
AW813872 stomach .e 104 to 287 184 to 1       184/186
(98 %)
1 diff
(99.5 %id)
DB162883 thymus .f 1 to 587 2 to 588 F92S tiling clone, capped   587/587
(100 %)
2 diff
(99.7 %id)
DW418734 Liver .f 477 to 877 17 to 417   tiling clone,   401/418
(95 %)
21 diff
(95.0 %id)
AA572813   .f 583 to 1006 1 to 424   tiling clone,   424/431
(98 %)
4 diff
(99.1 %id)
BG541234 lung .g-u 1 to 715 1 to 726 F56L I58N A59L F60P S61F ... tiling clone,   726/877
(82 %)
24 diff
(97.3 %id)
BF377325 testis_normal .h-u 1 to 631 641 to 12 N10H N88H tiling clone,   630/647
(97 %)
0 diff
(100 %id)
BF380265 uterus_tumor .h-u 11 to 619 1 to 607 L14W Y39* tiling clone,   607/607
(100 %)
9 diff
(98.6 %id)
BF335938 colon .h-u 15 to 429 1 to 418 F16L Y31S S32*     418/418
(100 %)
9 diff
(97.9 %id)
CV358178 uterus_tumor .h-u 15 to 629 1 to 611 I43T E51V tiling clone,   611/611
(100 %)
18 diff
(97.1 %id)
CV357737 testis_normal .h-u 40 to 635 1 to 594 F16S W19R L69W tiling clone,   594/594
(100 %)
21 diff
(96.5 %id)
BF888578 testis_normal .h-u 47 to 527 482 to 2 W2V N3D W19C V52G E53G ...   Submitted on the opposite strand 481/482
(99 %)
0 diff
(100 %id)
BI060544 uterus_tumor .h-u 63 to 647 593 to 12 N10H Q79L tiling clone,   582/600
(97 %)
0 diff
(100 %id)
BF913715 uterus_tumor .h-u 68 to 628 561 to 1 exact   Submitted on the opposite strand 561/561
(100 %)
15 diff
(97.4 %id)
BF335928 colon .h-u 180 to 490 356 to 44       313/356
(87 %)
0 diff
(100 %id)
BF885262 testis_normal .h-u 414 to 631 236 to 20     Submitted on the opposite strand 217/236
(91 %)
0 diff
(100 %id)
CV324010 colon .h-u 490 to 641 182 to 30   tiling clone, Submitted on the opposite strand 153/191
(80 %)
0 diff
(100 %id)
CV358182 uterus_tumor .h-u 503 to 631 140 to 15     Submitted on the opposite strand 126/140
(90 %)
0 diff
(100 %id)
BF360313 marrow .i-u 1 to 306 322 to 18 exact tiling clone,   305/336
(90 %)
0 diff
(100 %id)
BM715157 eye, human retina Gene CCDC47, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand    
AX810707   Gene CCDC47, variant not shown         Suspected internal deletion, this clone was ignored    
AX810724   Gene CCDC47, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
450 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI