To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene LASS1andGDF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
143 supporting clones for gene LASS1andGDF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM546636 brain, hippocampus .a 1 to 659 1 to 664   tiling clone,   664/1296
(51 %)
31 diff
(97.7 %id)
BQ218327 epithelioid carcinoma, Pancreas .a 10 to 619 1 to 619   tiling clone,   619/1063
(58 %)
20 diff
(98.2 %id)
BQ941118 large cell carcinoma, lung .a 15 to 505 1 to 497       497/1174
(42 %)
23 diff
(98.1 %id)
BX440537.
matches multiple genes
brain, fetal brain .a 30 to 905 1 to 874     also hits gene ULK2 874/874
(100 %)
8 diff
(99.1 %id)
DB504575 hypothalamus .a 30 to 483 1 to 454       454/454
(100 %)
2 diff
(99.6 %id)
AL120193 amygdala .a 35 to 505 1 to 470       470/471
(99 %)
3 diff
(99.4 %id)
NM_001492.4   .a 35 to 2592 1 to 2558   RefSeq,   2558/2558
(100 %)
0 diff
(100 %id)
NM_021267.3   .a 35 to 2592 1 to 2558   RefSeq,   2558/2558
(100 %)
0 diff
(100 %id)
BG709148 brain, hypothalamus .a 44 to 730 6 to 692       687/692
(99 %)
8 diff
(98.9 %id)
BQ278096 ovary, teratocarcinoma, cell line .a 55 to 574 1 to 524       524/1153
(45 %)
21 diff
(98.2 %id)
BM927050 brain .a 57 to 514 1 to 459       459/1280
(35 %)
8 diff
(99.4 %id)
BM925585 brain .a 72 to 795 7 to 740       734/1189
(61 %)
28 diff
(97.7 %id)
BX461198 brain, fetal brain .a 78 to 1104 1 to 1010       1010/1015
(99 %)
25 diff
(97.6 %id)
DB502712 hypothalamus .a 83 to 549 1 to 467       467/469
(99 %)
12 diff
(97.5 %id)
DB503364 hypothalamus .a 83 to 566 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
M62302 adult cerebellum and fetal brain (17-18 weekabortus) .a 83 to 2592 1 to 2510   tiling clone,   2510/2510
(100 %)
4 diff
(99.9 %id)
DB473550 hippocampus .a 85 to 543 1 to 459       459/459
(100 %)
3 diff
(99.4 %id)
BM906409 ovary (pool of 3) .a 87 to 700 73 to 697       625/1493
(41 %)
41 diff
(97.3 %id)
DB478735 hippocampus .a 89 to 575 1 to 487       487/487
(100 %)
3 diff
(99.4 %id)
BX419800 brain, fetal brain .a 102 to 1073 1 to 972       972/972
(100 %)
4 diff
(99.6 %id)
BX444664 adult brain, brain .a 103 to 1005 1 to 872       853/967
(88 %)
24 diff
(97.6 %id)
DR003556 hippocampus .a 115 to 679 1 to 566       566/566
(100 %)
5 diff
(99.2 %id)
BM459076 melanotic melanoma, skin .a 121 to 1014 1 to 911   available from MGC,   911/1086
(83 %)
40 diff
(96.4 %id)
DA204768 brain .a 262 to 840 2 to 580   tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
DA056086 cerebellum .a 283 to 848 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA257271 caudate nucleus .a 283 to 837 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA082888 cerebellum .a 284 to 849 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
DB505795 hypothalamus .a 288 to 799 1 to 512       512/512
(100 %)
2 diff
(99.7 %id)
BM547002 brain, hippocampus .a 297 to 1116 10 to 832       823/1091
(75 %)
15 diff
(98.7 %id)
H13981   .a 350 to 517 1 to 163       163/163
(100 %)
9 diff
(94.5 %id)
CN309967 embryonic stem cells, DMSO-treated H9 cellline .a 412 to 730 1 to 319       319/319
(100 %)
0 diff
(100 %id)
BF925920 nervous_tumor .a 434 to 683 12 to 257       246/257
(95 %)
6 diff
(97.7 %id)
AI560945 anaplastic oligodendroglioma, brain .a 448 to 786 339 to 1       339/339
(100 %)
18 diff
(94.7 %id)
AL134368 brain .a 511 to 1124 1 to 614       614/614
(100 %)
1 diff
(99.9 %id)
AW890382 nervous_tumor .a 560 to 812 8 to 260       253/267
(94 %)
7 diff
(97.4 %id)
BF933468 nervous_tumor .a 563 to 942 1 to 380       380/380
(100 %)
6 diff
(98.5 %id)
BI035800 nervous_tumor .a 577 to 897 1 to 323       323/324
(99 %)
13 diff
(96.0 %id)
BI035802 nervous_tumor .a 581 to 897 1 to 316       316/317
(99 %)
12 diff
(96.3 %id)
BM805316 brain, hippocampus .a 706 to 1364 1 to 670       670/1231
(54 %)
43 diff
(96.6 %id)
CN309968 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 731 to 1165 10 to 443       434/443
(97 %)
6 diff
(98.7 %id)
BI830202 brain, medulla .a 833 to 1168 1 to 335       335/339
(98 %)
2 diff
(99.5 %id)
TI_57170936   .a 833 to 1168 36 to 370       335/374
(89 %)
10 diff
(97.4 %id)
H23934 brain .a 842 to 1102 1 to 261       261/261
(100 %)
2 diff
(99.3 %id)
BF984825 duodenal adenocarcinoma, cell line, small intestine .a 867 to 1173 16 to 321       306/392
(78 %)
10 diff
(97.5 %id)
AB209169 brain .a 997 to 1702 1 to 706       706/706
(100 %)
1 diff
(99.9 %id)
CX871104 embryonic stem .a 1089 to 1892 1 to 804       804/804
(100 %)
2 diff
(99.8 %id)
BM547780 brain, hippocampus .a 1184 to 1809 1 to 628       628/1158
(54 %)
12 diff
(99.0 %id)
BQ636104 eye, retina .a 1380 to 1995 1 to 616   tiling clone,   616/616
(100 %)
0 diff
(100 %id)
CF456497 peripheral nervous system .a 1417 to 2076 23 to 679       657/878
(74 %)
20 diff
(97.8 %id)
BF341046 brain, glioblastoma with EGFR amplification .a 1545 to 2216 10 to 687       678/689
(98 %)
26 diff
(96.3 %id)
BQ066877 brain .a 1553 to 2282 19 to 753       735/1112
(66 %)
29 diff
(97.4 %id)
BI822768 pooled brain, lung, testis .a 1664 to 2370 1 to 739       739/782
(94 %)
80 diff
(89.8 %id)
TI_57202019   .a 1664 to 2370 1 to 739       739/877
(84 %)
80 diff
(90.9 %id)
AL134361 brain .a 1919 to 2401 1 to 483       483/483
(100 %)
0 diff
(100 %id)
BM767137 Ascites, stomach .a 1932 to 2314 1 to 383       383/383
(100 %)
2 diff
(99.5 %id)
BG059607 brain, glioblastoma without EGFR amplification .a 1945 to 2402 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
BG060020 brain, glioblastoma without EGFR amplification .a 2048 to 2402 355 to 1       355/355
(100 %)
0 diff
(100 %id)
AI085498 anaplastic oligodendroglioma, brain .a 2056 to 2395 340 to 1       340/340
(100 %)
5 diff
(98.6 %id)
AI560474 anaplastic oligodendroglioma, brain .a 2128 to 2378 251 to 1       251/284
(88 %)
22 diff
(92.3 %id)
AV725182 hypothalamus .a 2437 to 2599 1 to 163   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 163/163
(100 %)
0 diff
(100 %id)
AI671814 pooled germ cell tumors .a 2480 to 2598 1 to 119     Submitted on the opposite strand 119/119
(100 %)
0 diff
(100 %id)
NM_198207.2   .b 1 to 2102 1 to 2102 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2102/2102
(100 %)
0 diff
(100 %id)
BC022450 Brain, hypothalamus .b 10 to 2075 1 to 2066   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2066/2066
(100 %)
8 diff
(99.7 %id)
CR623677 adult brain .b 58 to 2063 1 to 2006   tiling clone,   2006/2006
(100 %)
0 diff
(100 %id)
BX422837 adult brain, brain .b 58 to 1053 1 to 985   fully sequenced,   985/985
(100 %)
10 diff
(99.0 %id)
CR594445 adult brain .b 69 to 1468 1 to 1400       1400/1400
(100 %)
0 diff
(100 %id)
BC032615 Skin, melanotic melanoma. .b 85 to 2102 11 to 2030   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2020/2020
(100 %)
6 diff
(99.8 %id)
BX422836 adult brain, brain .b 1023 to 2063 1039 to 1   fully sequenced,   1039/1039
(100 %)
14 diff
(98.7 %id)
TI_149313123   .b 1302 to 2102 882 to 88   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 795/985
(80 %)
20 diff
(98.0 %id)
TI_149295078   .b 1328 to 2099 857 to 85   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 773/1003
(77 %)
13 diff
(98.8 %id)
BF305369 muscle, rhabdomyosarcoma .b 1342 to 2085 1 to 737       737/872
(84 %)
19 diff
(97.9 %id)
BU683579 lung .b 1403 to 2099 715 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 697/697
(100 %)
2 diff
(99.8 %id)
BF887873 testis_normal .b 1522 to 2054 10 to 541       532/557
(95 %)
7 diff
(98.8 %id)
BF945989 nervous_normal .b 1538 to 1978 445 to 2       444/445
(99 %)
0 diff
(100 %id)
AW002982 pooled germ cell tumors .b 1544 to 2099 556 to 1       556/556
(100 %)
1 diff
(99.9 %id)
AW410274 muscle, rhabdomyosarcoma .b 1547 to 2095 587 to 39   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 549/549
(100 %)
1 diff
(99.9 %id)
CF541171 lung .b 1562 to 2102 556 to 16   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 541/541
(100 %)
0 diff
(100 %id)
AI867435 pooled germ cell tumors .b 1596 to 2099 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
BM503247 Pancreas, Purified pancreatic islet .b 1600 to 2094 495 to 1       495/495
(100 %)
0 diff
(100 %id)
DB575814 hypothalamus .b 1609 to 2094 1 to 487     Submitted on the opposite strand 487/488
(99 %)
8 diff
(98.4 %id)
DB577087 hypothalamus .b 1610 to 2102 1 to 492     Submitted on the opposite strand 492/492
(100 %)
1 diff
(99.8 %id)
BM727671 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1632 to 2103 1 to 472   fully sequenced, Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 472/472
(100 %)
0 diff
(100 %id)
DB574599 hypothalamus .b 1644 to 2095 1 to 452     Submitted on the opposite strand 452/452
(100 %)
2 diff
(99.6 %id)
AI017572 pooled .b 1653 to 2096 448 to 5       444/448
(99 %)
0 diff
(100 %id)
AA457767   .b 1658 to 1979 1 to 318   fully sequenced,   318/318
(100 %)
3 diff
(99.1 %id)
DB532006 hippocampus .b 1672 to 2099 1 to 429     Submitted on the opposite strand 429/429
(100 %)
18 diff
(95.9 %id)
DB573934 hypothalamus .b 1712 to 2095 1 to 384     Submitted on the opposite strand 384/384
(100 %)
8 diff
(98.0 %id)
AI143691 anaplastic oligodendroglioma, brain .b 1738 to 2096 363 to 5       359/363
(98 %)
0 diff
(100 %id)
AA912332 Dorsal root ganglion, peripheral nervous system .b 1751 to 2004 254 to 1       254/254
(100 %)
0 diff
(100 %id)
R56800 whole brain .b 1766 to 2101 344 to 7       338/344
(98 %)
0 diff
(100 %id)
AI887100 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1798 to 2004 208 to 1       208/208
(100 %)
1 diff
(99.6 %id)
BU957931 mixed (pool of 40 RNAs) .b 1813 to 2101 36 to 325       290/359
(80 %)
4 diff
(98.9 %id)
AI671986 pooled germ cell tumors .b 1819 to 2099 281 to 1       281/281
(100 %)
0 diff
(100 %id)
AA457570   .b 1822 to 2004 183 to 1   fully sequenced,   183/183
(100 %)
0 diff
(100 %id)
BM681099 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1845 to 2102 276 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 258/258
(100 %)
0 diff
(100 %id)
BI601167 brain, hypothalamus .c 1 to 724 6 to 738   tiling clone,   732/807
(90 %)
21 diff
(97.4 %id)
TI_45214291   .c 1 to 724 97 to 829       732/898
(81 %)
21 diff
(97.7 %id)
AW149467 brain, medulloblastoma .c 335 to 1083 748 to 1       748/748
(100 %)
23 diff
(97.0 %id)
AI936592 pooled .c 462 to 1084 625 to 3   tiling clone,   623/625
(99 %)
1 diff
(99.9 %id)
DB545163 hippocampus .c 636 to 1085 1 to 450     Submitted on the opposite strand 450/452
(99 %)
6 diff
(98.7 %id)
BI966017 Islets of Langerhans, Pancreas .c 643 to 1083 453 to 12   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 442/538
(82 %)
24 diff
(95.6 %id)
DB547404 hippocampus .c 645 to 1083 1 to 439     Submitted on the opposite strand 439/439
(100 %)
1 diff
(99.8 %id)
BF516540   .c 664 to 1090 441 to 15   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 427/427
(100 %)
0 diff
(100 %id)
DB539565 hippocampus .c 741 to 1083 1 to 341     Submitted on the opposite strand 341/341
(100 %)
18 diff
(94.8 %id)
BF515640   .c 743 to 1087 362 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 345/345
(100 %)
6 diff
(98.3 %id)
DB539352 hippocampus .c 818 to 1083 1 to 265     Submitted on the opposite strand 265/265
(100 %)
11 diff
(95.9 %id)
BI753950 brain .d 1 to 843 1 to 844 A21G G22R T23D G24R D25G ... tiling clone,   844/1041
(81 %)
8 diff
(99.3 %id)
TI_57215642   .d 1 to 918 35 to 953 A21G G22R T23D G24R D25G ... tiling clone,   921/1075
(85 %)
25 diff
(97.7 %id)
AK293463 cerebellum .e 1 to 935 1 to 935 Y27C tiling clone,   935/935
(100 %)
1 diff
(99.9 %id)
DC302345 cerebellum .e 1 to 546 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
DC319117 brain .e 42 to 627 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
BC084582 Peripheral Nervous System, sympathetictrunk .e 49 to 1945 1 to 1897 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 1897/1897
(100 %)
3 diff
(99.9 %id)
DC302368 cerebellum .e 49 to 633 1 to 585       585/585
(100 %)
0 diff
(100 %id)
BQ876590 sympathetic trunk .e 53 to 825 1 to 775       775/838
(92 %)
7 diff
(99.2 %id)
DB057009 testis .e 140 to 672 2 to 534   capped   533/533
(100 %)
3 diff
(99.5 %id)
DA252473 caudate nucleus .e 144 to 731 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
CR614536 Placenta Cot 25-normalized .e 183 to 1912 1 to 1730 exact tiling clone,   1730/1730
(100 %)
0 diff
(100 %id)
BX339170 Placenta Cot 25-normalized .e 183 to 1126 1 to 941 exact fully sequenced,   941/941
(100 %)
1 diff
(99.9 %id)
BM129680 Islets of Langerhans, Pancreas .e 301 to 875 1 to 575     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 575/575
(100 %)
0 diff
(100 %id)
DA078601 cerebellum .e 424 to 987 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BX453803 adult brain, brain .e 505 to 1309 807 to 5       803/943
(85 %)
3 diff
(99.7 %id)
BM503409 Pancreas, Purified pancreatic islet .e 658 to 1125 1 to 468       468/468
(100 %)
0 diff
(100 %id)
CK822050 Pancreas, Purified pancreatic islet .e 677 to 1250 1 to 574     Submitted on the opposite strand 574/574
(100 %)
1 diff
(99.9 %id)
BX444663 adult brain, brain .e 839 to 1861 1034 to 26       1009/1015
(99 %)
0 diff
(100 %id)
CN266945 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 851 to 1493 1 to 643       643/643
(100 %)
5 diff
(99.3 %id)
BU184982 melanotic melanoma, cell line, skin .e 866 to 1407 1 to 544       544/977
(55 %)
26 diff
(97.4 %id)
BU149431 melanotic melanoma, cell line, skin .e 866 to 1576 1 to 714       714/930
(76 %)
25 diff
(97.4 %id)
BU145284 melanotic melanoma, cell line, skin .e 866 to 1389 1 to 525       525/1111
(47 %)
10 diff
(99.1 %id)
BQ892837 melanotic melanoma, cell line, skin .e 866 to 1639 1 to 782       782/934
(83 %)
27 diff
(97.2 %id)
BU179233 melanotic melanoma, cell line, skin .e 866 to 1541 1 to 676       676/957
(70 %)
31 diff
(96.8 %id)
BF343384 brain, glioblastoma with EGFR amplification .e 889 to 1683 1 to 788       788/1005
(78 %)
25 diff
(97.6 %id)
BX399073 Placenta Cot 25-normalized .e 1096 to 1911 814 to 1   fully sequenced,   814/814
(100 %)
15 diff
(98.2 %id)
BM129393 Islets of Langerhans, Pancreas .e 1433 to 1945 527 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 513/513
(100 %)
1 diff
(99.9 %id)
BX283468 endometrium, adenocarcinoma cell line, uterus .f-u 1 to 529 1 to 529   tiling clone,   529/529
(100 %)
1 diff
(99.9 %id)
BC004943 Uterus, endometrium adenocarcinoma .f-u 2 to 891 1 to 890   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 890/890
(100 %)
0 diff
(100 %id)
BE391650 endometrium, adenocarcinoma cell line, uterus .f-u 127 to 655 1 to 523       523/561
(93 %)
18 diff
(96.8 %id)
AL708210 human skeletal muscle .f-u 803 to 1138 1 to 336   tiling clone,   336/344
(97 %)
1 diff
(99.8 %id)
BI916188 brain .f-u 914 to 1649 1 to 736 exact tiling clone,   736/736
(100 %)
4 diff
(99.5 %id)
TI_57239710   .f-u 914 to 1649 29 to 764 exact     736/764
(96 %)
6 diff
(99.3 %id)
DA355926 subthalamic nucleus .f-u 1167 to 1715 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
CN414814 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f-u 1490 to 1740 1 to 251   tiling clone,   251/251
(100 %)
22 diff
(91.3 %id)
BQ320034 colon .g-u 1 to 265 1 to 265 T3E S10Y P11R G12V H13M ... tiling clone,   265/271
(97 %)
9 diff
(96.7 %id)
BQ320025 colon .g-u 3 to 265 24 to 286   tiling clone,   263/292
(90 %)
12 diff
(95.9 %id)
BQ340552 nervous_normal .g-u 26 to 265 1 to 234   tiling clone,   234/240
(97 %)
11 diff
(95.5 %id)
CN367075 embryonic stem cells, cell lines H1, H7, andH9 Gene LASS1andGDF1, variant not shown         This clone was ignored    
AI362733 anaplastic oligodendroglioma, brain Gene LASS1andGDF1, variant not shown         Suspected internal deletion, this clone was ignored    
AI939570 anaplastic oligodendroglioma, brain Gene LASS1andGDF1, variant not shown         Suspected internal deletion, this clone was ignored    
AI651252 pooled germ cell tumors Gene LASS1andGDF1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC