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Gene GATA6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
106 supporting clones for gene GATA6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK223547 Kidney .a 1 to 2057 1 to 2057 S287N tiling clone,   2057/2057
(100 %)
1 diff
(100.0 %id)
U66075   .a 304 to 3158 1 to 2854   tiling clone, AAA   2854/2854
(100 %)
7 diff
(99.8 %id)
D87811   .a 386 to 3151 1 to 2762   tiling clone,   2762/2762
(100 %)
4 diff
(99.9 %id)
X95701 normal whole heart .b 1 to 3770 1 to 3770 G281V tiling clone,   3770/3779
(99 %)
8 diff
(99.8 %id)
CN280495 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 9 to 479 1 to 471       471/471
(100 %)
0 diff
(100 %id)
TI_57164344   .b 12 to 701 34 to 723       690/723
(95 %)
7 diff
(99.1 %id)
BC027891 Pancreas, Spleen, adult pooled .b 13 to 793 1 to 781   tiling clone, available from MGC,   781/781
(100 %)
0 diff
(100 %id)
BI834020 pooled pancreas and spleen .b 13 to 701 1 to 689   available from MGC,   689/689
(100 %)
1 diff
(99.9 %id)
NM_005257.3   .b 13 to 3506 1 to 3494 exact RefSeq,   3494/3494
(100 %)
0 diff
(100 %id)
CN280494 embryonic stem cells, DMSO-treated H9 cellline .b 19 to 479 1 to 461       461/461
(100 %)
0 diff
(100 %id)
BM746307 stomach .b 128 to 467 1 to 340       340/340
(100 %)
0 diff
(100 %id)
DN999969   .b 169 to 864 1 to 695       695/695
(100 %)
4 diff
(99.5 %id)
TI_157600940   .b 231 to 801 689 to 119       571/1086
(52 %)
0 diff
(100 %id)
BF590459 colon, colon tumor, RER+ .b 238 to 801 564 to 1       564/564
(100 %)
0 diff
(100 %id)
TI_157608773   .b 245 to 801 612 to 60       553/615
(89 %)
0 diff
(100 %id)
AW242779 Kidney .b 295 to 782 488 to 1       488/488
(100 %)
0 diff
(100 %id)
BF195041 fibrotheoma, ovary .b 311 to 801 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
AA430467 ovarian tumor, ovary .b 386 to 801 417 to 1       417/417
(100 %)
24 diff
(94.3 %id)
AW008285 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 427 to 755 329 to 1       329/329
(100 %)
0 diff
(100 %id)
AW206864   .b 472 to 800 329 to 1       329/329
(100 %)
1 diff
(99.7 %id)
N70040 lung .b 538 to 778 239 to 2       238/240
(99 %)
0 diff
(100 %id)
DA010879 adrenal gland .b 1208 to 1784 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BF002658 colon, colon tumor, RER+ .b 1223 to 1464 14 to 255     Submitted on the opposite strand 242/256
(94 %)
8 diff
(96.9 %id)
AA535268 colon .b 1224 to 1705 1 to 481     Submitted on the opposite strand 481/571
(84 %)
12 diff
(97.9 %id)
AA446863   .b 1225 to 1754 1 to 528     Submitted on the opposite strand 528/528
(100 %)
6 diff
(98.9 %id)
AI183672 lung .b 1225 to 1699 1 to 474     Submitted on the opposite strand 474/474
(100 %)
4 diff
(99.2 %id)
AI193482 lung .b 1225 to 1579 1 to 355     Submitted on the opposite strand 355/365
(97 %)
2 diff
(99.5 %id)
AI221779 pooled .b 1225 to 1703 1 to 479     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
AI762621 colon, colon tumor, RER+ .b 1225 to 1823 1 to 598     Submitted on the opposite strand 598/602
(99 %)
3 diff
(99.6 %id)
AW028794 fibrotheoma, ovary .b 1225 to 1734 1 to 511     Submitted on the opposite strand 511/511
(100 %)
2 diff
(99.7 %id)
AW052092 pooled .b 1225 to 1699 1 to 475     Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
BF054957 pooled .b 1225 to 1579 1 to 354     Submitted on the opposite strand 354/354
(100 %)
0 diff
(100 %id)
BF115810 fibrotheoma, ovary .b 1225 to 1966 1 to 742     Submitted on the opposite strand 742/742
(100 %)
1 diff
(99.9 %id)
AW296006   .b 1226 to 1457 1 to 232     Submitted on the opposite strand 232/232
(100 %)
0 diff
(100 %id)
AW296681   .b 1226 to 1665 1 to 440     Submitted on the opposite strand 440/440
(100 %)
1 diff
(99.8 %id)
AW297154   .b 1226 to 1656 1 to 431     Submitted on the opposite strand 431/436
(98 %)
3 diff
(99.4 %id)
BF513446   .b 1226 to 1716 1 to 491     Submitted on the opposite strand 491/502
(97 %)
6 diff
(98.9 %id)
BF514504   .b 1226 to 1681 1 to 456     Submitted on the opposite strand 456/456
(100 %)
0 diff
(100 %id)
BF063224 colon, colon tumor, RER+ .b 1238 to 1707 1 to 470     Submitted on the opposite strand 470/498
(94 %)
18 diff
(96.4 %id)
AI742202 pooled .b 1246 to 1807 1 to 562     Submitted on the opposite strand 562/562
(100 %)
0 diff
(100 %id)
AW471212 pooled .b 1267 to 1672 1 to 406     Submitted on the opposite strand 406/406
(100 %)
0 diff
(100 %id)
AA778418 heart .b 1270 to 1723 1 to 452     Submitted on the opposite strand 452/452
(100 %)
7 diff
(98.5 %id)
BF590994 colon, colon tumor, RER+ .b 1270 to 1774 1 to 505     Submitted on the opposite strand 505/505
(100 %)
4 diff
(99.3 %id)
BF478080 pooled germ cell tumors .b 1270 to 1579 1 to 310     Submitted on the opposite strand 310/313
(99 %)
21 diff
(93.3 %id)
AA902908 leiomyosarcoma, soft tissue .b 1299 to 1743 1 to 436     Submitted on the opposite strand 436/436
(100 %)
9 diff
(98.0 %id)
AI354319 lung .b 1428 to 1566 1 to 139     Submitted on the opposite strand 139/139
(100 %)
4 diff
(97.2 %id)
AA446978   .b 1497 to 1827 321 to 1     Submitted on the opposite strand 321/333
(96 %)
12 diff
(96.4 %id)
BM811359 ovary (pool of 3) .b 1548 to 2489 20 to 970       951/1049
(90 %)
22 diff
(98.0 %id)
CX166174 human embryonic stem cells differentiated toan early endodermal cell type .b 1562 to 2364 14 to 816   tiling clone,   803/816
(98 %)
6 diff
(99.3 %id)
CB267166 adipose .b 1580 to 2125 1 to 544       544/552
(98 %)
2 diff
(99.7 %id)
ES308606 beard hair, skin .b 1729 to 1886 1 to 157       157/157
(100 %)
1 diff
(99.4 %id)
AU309819 neuroblastoma .b 1747 to 2320 1 to 574       574/574
(100 %)
0 diff
(100 %id)
BP338346 Spleen .b 1769 to 2351 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CR737373 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 2810 to 3229 434 to 15   AAA   420/421
(99 %)
0 diff
(100 %id)
AI610870 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 2869 to 3230 366 to 5       362/366
(98 %)
0 diff
(100 %id)
W19304 lung .b 3077 to 3513 1 to 441       441/441
(100 %)
4 diff
(99.1 %id)
AU309820 neuroblastoma .b 3226 to 3765 545 to 6   tiling clone,   540/545
(99 %)
0 diff
(100 %id)
AA723694 pooled .b 3364 to 3770 410 to 1       410/410
(100 %)
11 diff
(97.4 %id)
N91601 lung .b 3573 to 3770 199 to 2       198/199
(99 %)
0 diff
(100 %id)
CA775586 Pancreas, Purified pancreatic islet .c-u 1 to 651 38 to 687   tiling clone, fully sequenced,   650/687
(94 %)
7 diff
(99.0 %id)
AA906878 pooled .c-u 472 to 906 432 to 6       427/432
(98 %)
0 diff
(100 %id)
BF513325   .c-u 474 to 968 495 to 1 exact tiling clone,   495/495
(100 %)
0 diff
(100 %id)
CA775306 Pancreas, Purified pancreatic islet .c-u 621 to 922 303 to 1   fully sequenced,   303/303
(100 %)
0 diff
(100 %id)
DA017912 adrenal gland .d-u 1 to 549 2 to 549   tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
AI394107 B-cell, chronic lymphotic leukemia .d-u 394 to 896 504 to 2   tiling clone,   503/509
(98 %)
0 diff
(100 %id)
W07640.
matches multiple genes
lung .d-u 446 to 667 1 to 214     also hits gene MEX3B 214/214
(100 %)
10 diff
(95.4 %id)
W07635 lung .d-u 448 to 541 1 to 94       94/94
(100 %)
0 diff
(100 %id)
AV685546 hepatocellular carcinoma .d-u 627 to 1046 1 to 411       411/411
(100 %)
6 diff
(98.6 %id)
AV697686 hepatocellular carcinoma .d-u 631 to 1208 1 to 574       574/603
(95 %)
9 diff
(98.6 %id)
H77651 liver and spleen .d-u 711 to 1117 1 to 418       418/422
(99 %)
21 diff
(95.1 %id)
AA476226 ovarian tumor, ovary .d-u 729 to 1108 9 to 384   tiling clone,   376/384
(97 %)
6 diff
(98.5 %id)
BE834440 ovary .d-u 870 to 1134 14 to 276       263/277
(94 %)
14 diff
(95.0 %id)
BE834454 ovary .d-u 870 to 1126 16 to 269       254/269
(94 %)
6 diff
(97.8 %id)
BE834460 ovary .d-u 870 to 1126 37 to 292       256/292
(87 %)
6 diff
(98.0 %id)
CR591851 HeLa cells Cot 25-normalized .d-u 912 to 1709 1 to 798       798/798
(100 %)
0 diff
(100 %id)
BX384651   .d-u 912 to 1709 1 to 798       798/798
(100 %)
0 diff
(100 %id)
C16879   .d-u 916 to 1179 1 to 264       264/264
(100 %)
1 diff
(99.7 %id)
BG548824 lung .d-u 926 to 1431 1 to 510       510/834
(61 %)
5 diff
(99.5 %id)
DR158242 human embryonic stem cells differentiated toan early endodermal cell type .d-u 939 to 1714 778 to 4     Submitted on the opposite strand 775/778
(99 %)
0 diff
(100 %id)
CA314008 Human Lung Epithelial cells, lung .d-u 945 to 1711 785 to 19   AAA   767/767
(100 %)
0 diff
(100 %id)
DR158516 human embryonic stem cells differentiated toan early endodermal cell type .d-u 949 to 1718 778 to 9     Submitted on the opposite strand 770/778
(98 %)
0 diff
(100 %id)
BQ000719 lung, Metastatic Chondrosarcoma .d-u 952 to 1717 783 to 19   tiling clone, AAA   765/765
(100 %)
3 diff
(99.7 %id)
CX759835 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d-u 1011 to 1721 750 to 46   AAA   705/738
(95 %)
10 diff
(98.7 %id)
BQ001180 lung, Metastatic Chondrosarcoma .d-u 1022 to 1717 715 to 19   AAA   697/697
(100 %)
6 diff
(99.2 %id)
CX166979 human embryonic stem cells differentiated toan early endodermal cell type .d-u 1045 to 1717 686 to 14   AAA Submitted on the opposite strand 673/673
(100 %)
0 diff
(100 %id)
CX166393 human embryonic stem cells differentiated toan early endodermal cell type .d-u 1046 to 1714 699 to 30   AAA Submitted on the opposite strand 670/670
(100 %)
2 diff
(99.8 %id)
BQ009579 Chondrosarcoma, Left Pubic Bone .d-u 1059 to 1716 678 to 19   AAA   660/660
(100 %)
3 diff
(99.6 %id)
D12199 Liver .d-u 1132 to 1324 1 to 193       193/194
(99 %)
4 diff
(98.0 %id)
DB357702 whole embryo, mainly head .d-u 1136 to 1723 586 to 1       586/592
(98 %)
12 diff
(98.0 %id)
CX167040 human embryonic stem cells differentiated toan early endodermal cell type .d-u 1148 to 1710 588 to 26   AAA Submitted on the opposite strand 563/563
(100 %)
1 diff
(99.9 %id)
CN479006 Human Lung Epithelial cells, lung .d-u 1177 to 1717 559 to 19   AAA   541/557
(97 %)
2 diff
(99.7 %id)
AJ708023 heart .d-u 1180 to 1716 538 to 3     Submitted on the opposite strand 536/538
(99 %)
0 diff
(100 %id)
BF591454 colon, colon tumor, RER+ .d-u 1229 to 1724 496 to 1       496/496
(100 %)
1 diff
(99.8 %id)
AI917745 pooled germ cell tumors .d-u 1233 to 1711 478 to 1       478/478
(100 %)
2 diff
(99.6 %id)
AI122998 pooled .d-u 1304 to 1716 417 to 6       412/417
(98 %)
0 diff
(100 %id)
AI802689 colon, colonic mucosa from 5 ulcerative colitispatients .d-u 1309 to 1717 422 to 14   AAA   409/409
(100 %)
0 diff
(100 %id)
N81132.
matches multiple genes
lung .d-u 1314 to 1714 402 to 1     also hits gene MEX3B 402/402
(100 %)
4 diff
(99.1 %id)
BM850945 stomach .d-u 1365 to 1717 1 to 353   AAA   353/353
(100 %)
0 diff
(100 %id)
W07484 lung .d-u 1384 to 1707 329 to 3     Submitted on the opposite strand 327/331
(98 %)
0 diff
(100 %id)
AA677378 liver and spleen .d-u 1407 to 1715 309 to 1       309/309
(100 %)
5 diff
(98.4 %id)
AA476227 ovarian tumor, ovary .d-u 1441 to 1717 288 to 12   AAA   277/277
(100 %)
0 diff
(100 %id)
CN273517 embryonic stem cells, DMSO-treated H9 cellline .d-u 1445 to 1714 280 to 11   AAA Submitted on the opposite strand 270/270
(100 %)
8 diff
(97.1 %id)
CN411454 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d-u 1513 to 1711 209 to 11   AAA Submitted on the opposite strand 199/199
(100 %)
4 diff
(98.0 %id)
BM820326 stomach .d-u 1517 to 1711 1 to 195   AAA   195/195
(100 %)
0 diff
(100 %id)
AI475969 colon, moderately-differentiated adenocarcinoma .d-u 1529 to 1717 225 to 35   AAA   191/193
(98 %)
8 diff
(95.9 %id)
H77652 liver and spleen .d-u 1556 to 1684 129 to 1       129/129
(100 %)
0 diff
(100 %id)
BX349170   .d-u 1558 to 1709 1 to 152       152/161
(94 %)
1 diff
(99.4 %id)
AV689052 hepatocellular carcinoma Gene GATA6, variant not shown         Suspected internal deletion, this clone was ignored    
AV690497 hepatocellular carcinoma Gene GATA6, variant not shown         Suspected internal deletion, this clone was ignored    
BP258038 heart Gene GATA6, variant not shown         Suspected internal deletion, this clone was ignored    
AW015488   Gene GATA6, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI