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Gene RAP1GAP2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
138 supporting clones for gene RAP1GAP2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AJ628446   .a 1 to 6661 1 to 6666 K334N tiling clone, AAA   6666/6666
(100 %)
25 diff
(99.7 %id)
NM_015085.4   .a 1 to 6662 1 to 6662 exact RefSeq, AAA   6662/6662
(100 %)
0 diff
(100 %id)
TI_1968231825   .a 130 to 765 189 to 820     Submitted on the opposite strand 632/1336
(47 %)
53 diff
(96.1 %id)
AJ628447   .b 1 to 6616 1 to 6621 K319N tiling clone, AAA   6621/6621
(100 %)
25 diff
(99.7 %id)
NM_001100398.1   .b 1 to 6617 1 to 6617 exact RefSeq, AAA   6617/6617
(100 %)
0 diff
(100 %id)
CR627427 cervix .b 32 to 6618 1 to 6591   tiling clone, available from DKFZ, AAA   6591/6591
(100 %)
13 diff
(99.9 %id)
TI_1968234579   .b 574 to 1758 13 to 1185   AAA   1175/1269
(92 %)
22 diff
(98.3 %id)
AL707396 human skeletal muscle .b 605 to 1316 1 to 716       716/719
(99 %)
13 diff
(98.2 %id)
TI_1968233577   .b 718 to 1830 1109 to 5       1107/1253
(88 %)
10 diff
(99.3 %id)
BF918615 nervous_tumor .b 848 to 1274 32 to 459       428/459
(93 %)
6 diff
(98.7 %id)
BF919134 nervous_tumor .b 925 to 1317 427 to 35     Submitted on the opposite strand 393/427
(92 %)
2 diff
(99.6 %id)
BF918553 nervous_tumor .b 1047 to 1317 405 to 135     Submitted on the opposite strand 271/405
(66 %)
0 diff
(100 %id)
TI_1968233573   .b 1142 to 2230 16 to 1100       1085/1264
(85 %)
19 diff
(98.5 %id)
AL707517 human skeletal muscle .b 1228 to 1375 1 to 151       151/151
(100 %)
7 diff
(95.4 %id)
BQ368231 placenta_normal .b 1537 to 1827 11 to 293       283/296
(95 %)
15 diff
(95.0 %id)
TI_1968233579   .b 1580 to 2808 1200 to 2   tiling clone,   1146/1255
(91 %)
16 diff
(98.8 %id)
BI025250 marrow .b 1600 to 1926 1 to 327       327/327
(100 %)
1 diff
(99.7 %id)
TI_813709403   .b 1628 to 2468 29 to 869       841/1051
(80 %)
10 diff
(99.1 %id)
DN831680 pooled .b 1647 to 2422 1 to 776       776/776
(100 %)
2 diff
(99.8 %id)
BC037493 Brain, hippocampus .b 1776 to 6616 6 to 4851   available from MGC, AAA   4846/4846
(100 %)
24 diff
(99.6 %id)
R27224 placenta .b 1798 to 1977 1 to 180       180/180
(100 %)
0 diff
(100 %id)
T06969   .b 1889 to 2230 351 to 10       342/351
(97 %)
0 diff
(100 %id)
DA127965 cerebellum .b 2150 to 2743 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DA193319 amygdala .b 2151 to 2735 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA244285 brain .b 2421 to 2997 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
AI961091 pooled germ cell tumors .b 2422 to 2816 395 to 1       395/395
(100 %)
10 diff
(97.5 %id)
AI417340 anaplastic oligodendroglioma, brain .b 2434 to 2808 387 to 13   AAA   375/375
(100 %)
6 diff
(98.4 %id)
R27225 placenta .b 2503 to 2813 314 to 1       314/428
(73 %)
5 diff
(98.9 %id)
AL534952.
matches multiple genes
brain, fetal brain .b 2514 to 3329 1 to 816   fully sequenced, also hits gene EEF1A2 816/854
(95 %)
11 diff
(98.8 %id)
DA317065 hippocampus .b 2534 to 2842 10 to 318   capped   309/317
(97 %)
0 diff
(100 %id)
BU857899 adenocarcinoma, cell line, breast .b 2579 to 3264 1 to 686       686/686
(100 %)
1 diff
(99.9 %id)
CN267232 embryonic stem cells, cell lines H1, H7, andH9 .b 2896 to 3027 1 to 132       132/132
(100 %)
1 diff
(99.3 %id)
DA322722 hippocampus .b 2991 to 3548 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
CN365132 embryonic stem cells, cell lines H1, H7, andH9 .b 3052 to 3638 1 to 587       587/587
(100 %)
0 diff
(100 %id)
BE869530 adenocarcinoma, colon .b 3083 to 3614 1 to 538       538/620
(86 %)
23 diff
(96.3 %id)
BG014482 placenta_normal .b 3140 to 3288 1 to 149       149/149
(100 %)
5 diff
(96.7 %id)
CX760132 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 3167 to 3931 1 to 761     Submitted on the opposite strand 761/761
(100 %)
4 diff
(99.5 %id)
BI028223 marrow .b 3231 to 3666 15 to 459       445/461
(96 %)
29 diff
(93.8 %id)
BU623020 cell lines, Chondrosarcoma .b 3640 to 4050 430 to 19   AAA   412/416
(99 %)
1 diff
(99.8 %id)
BQ000576 Fibrosarcoma .b 3695 to 4050 374 to 19   AAA   356/364
(97 %)
2 diff
(99.5 %id)
CD653723 Embryonic Stem cells .b 3722 to 4475 10 to 758   tiling clone,   749/804
(93 %)
6 diff
(99.3 %id)
AI358001 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3855 to 4186 1 to 334   AAA Submitted on the opposite strand 334/334
(100 %)
5 diff
(98.6 %id)
BG011837 placenta_normal .b 3961 to 4104 1 to 142       142/150
(94 %)
4 diff
(97.4 %id)
BG011836 placenta_normal .b 3962 to 4095 1 to 135       135/135
(100 %)
6 diff
(95.6 %id)
BX646705   .b 4051 to 4430 1 to 380       380/380
(100 %)
0 diff
(100 %id)
DA175180 amygdala .b 4060 to 4608 2 to 550   capped   549/549
(100 %)
5 diff
(99.1 %id)
DA200464 brain .b 4060 to 4626 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA787091 brain .b 4064 to 4467 2 to 405   capped   404/404
(100 %)
0 diff
(100 %id)
CX785962 human embryonic stem cells .b 4077 to 4812 1 to 736       736/736
(100 %)
0 diff
(100 %id)
TI_1968233605   .b 4078 to 5199 3 to 1113       1111/1229
(90 %)
15 diff
(98.8 %id)
TI_1968231819   .b 4209 to 5252 1126 to 92     Submitted on the opposite strand 1035/1165
(88 %)
0 diff
(100 %id)
BI089737 cervix .b 4250 to 5023 1 to 770       770/771
(99 %)
12 diff
(98.5 %id)
DA209735 brain .b 4297 to 4853 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB256556 uterus .b 4306 to 4873 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DA056361 cerebellum .b 4343 to 4917 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BM454617 embryonal carcinoma, cell line, testis .b 4380 to 4876 1 to 501       501/1380
(36 %)
16 diff
(98.9 %id)
TI_1968233133   .b 4407 to 5252 1122 to 289       834/1243
(67 %)
0 diff
(100 %id)
BQ340696 nervous_normal .b 4410 to 4684 291 to 21       271/292
(92 %)
0 diff
(100 %id)
TI_1968233603   .b 4560 to 5252 13 to 704       692/1265
(54 %)
4 diff
(99.7 %id)
CB153463 brain .b 4721 to 5282 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
AK000478   .b 4731 to 6616 1 to 1884   tiling clone, available from FLJ, AAA   1884/1884
(100 %)
2 diff
(99.9 %id)
AL565718.
matches multiple genes
brain, fetal brain .b 5513 to 6601 1096 to 1   fully sequenced, also hits gene EEF1A2 1096/1172
(93 %)
51 diff
(95.7 %id)
BX489258 human skeletal muscle .b 6257 to 6616 399 to 40   AAA   360/369
(97 %)
2 diff
(99.5 %id)
BC140870 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 1 to 3020 91 to 3110 exact tiling clone,   3025/3114
(97 %)
10 diff
(99.7 %id)
BC140871 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 1 to 4624 91 to 4714 exact tiling clone,   4629/4714
(98 %)
11 diff
(99.8 %id)
TI_1968233581   .c 1955 to 3158 1197 to 3       1195/1267
(94 %)
23 diff
(98.2 %id)
TI_1968235641   .c 2120 to 3020 9 to 910       902/1227
(73 %)
10 diff
(99.2 %id)
DA963367 stomach .c 4253 to 4799 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
BG014713 placenta_normal .c 4456 to 4740 284 to 1       284/284
(100 %)
2 diff
(99.3 %id)
CR617475 Placenta Cot 25-normalized .c 4491 to 5750 1 to 1260   tiling clone,   1260/1260
(100 %)
0 diff
(100 %id)
AL550030 placenta, Placenta Cot 25-normalized .c 4491 to 5634 1 to 1135       1135/1135
(100 %)
16 diff
(98.6 %id)
AI905304 breast .c 4533 to 4946 469 to 58       412/470
(87 %)
0 diff
(100 %id)
CX164008 human embryonic stem cells differentiated toan early endodermal cell type .c 4581 to 5339 1 to 760       760/760
(100 %)
1 diff
(99.9 %id)
BQ233312 embryonal carcinoma, cell line, testis .c 4601 to 5338 1 to 747       747/923
(80 %)
20 diff
(97.9 %id)
BM791211 stomach .c 4636 to 5286 1 to 651       651/651
(100 %)
1 diff
(99.9 %id)
BE930566 placenta_normal .c 4699 to 5084 1 to 386       386/386
(100 %)
13 diff
(96.7 %id)
CD556750 brain, Pituitary .c 4707 to 5449 1 to 748       748/918
(81 %)
9 diff
(99.1 %id)
DR001262 fetal brain .c 4851 to 5519 13 to 682       670/682
(98 %)
6 diff
(99.2 %id)
BE181351 head_neck .c 4868 to 5195 328 to 3     Submitted on the opposite strand 326/383
(85 %)
0 diff
(100 %id)
BQ309165 breast .c 4901 to 5369 466 to 1       466/472
(98 %)
13 diff
(97.3 %id)
BM728780 eye, fetal eye .c 4905 to 5556 1 to 652       652/652
(100 %)
1 diff
(99.9 %id)
W22179 eye, retina .c 5013 to 5559 556 to 7       550/630
(87 %)
0 diff
(100 %id)
BF945183 nervous_normal .c 5102 to 5497 12 to 407       396/416
(95 %)
7 diff
(98.4 %id)
AI031629 brain, glioblastoma (pooled) .c 5127 to 5385 447 to 187       261/447
(58 %)
0 diff
(100 %id)
TI_159699247   .c 5137 to 5987 889 to 33   AAA   857/1010
(84 %)
35 diff
(96.6 %id)
AL713620 testis .c 5197 to 5981 785 to 1       785/785
(100 %)
4 diff
(99.5 %id)
BX281703 embryonal carcinoma, cell line, testis .c 5203 to 5664 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
BG389961 embryonal carcinoma, cell line, testis .c 5204 to 5827 1 to 624       624/624
(100 %)
14 diff
(97.8 %id)
CB047758 Kidney .c 5409 to 5924 10 to 527       518/527
(98 %)
6 diff
(98.9 %id)
AA099636 uterus .c 5437 to 5595 1 to 156       156/156
(100 %)
5 diff
(96.8 %id)
AI655487 pooled germ cell tumors .c 5500 to 5988 492 to 6       487/492
(98 %)
0 diff
(100 %id)
AI830313 colon, colon tumor, RER+ .c 5500 to 5988 487 to 1       487/487
(100 %)
3 diff
(99.4 %id)
BG716401 brain, hypothalamus .c 5532 to 5989 1 to 455   AAA   455/455
(100 %)
11 diff
(97.6 %id)
AI738687 colon, colon tumor, RER+ .c 5541 to 5990 448 to 3       446/451
(98 %)
0 diff
(100 %id)
AI916790 pooled germ cell tumors .c 5550 to 5989 442 to 1       442/442
(100 %)
4 diff
(99.1 %id)
AI990538 pooled germ cell tumors .c 5584 to 5988 404 to 1       404/404
(100 %)
7 diff
(98.3 %id)
BF001448 colon, colon tumor, RER+ .c 5595 to 5988 391 to 1       391/398
(98 %)
2 diff
(99.5 %id)
AL574001 placenta, Placenta Cot 25-normalized .c 5599 to 5953 360 to 5       356/976
(36 %)
0 diff
(100 %id)
AI587033 adenocarcinoma, Pancreas .c 5614 to 5988 377 to 2       376/740
(50 %)
0 diff
(100 %id)
AI804668 Prostate .c 5614 to 5988 382 to 8       375/383
(97 %)
0 diff
(100 %id)
BF057695 pooled germ cell tumors .c 5614 to 5988 385 to 10       376/385
(97 %)
0 diff
(100 %id)
BQ181861 Knee, Osteoarthritic Cartilage .c 5614 to 5989 394 to 19   tiling clone, AAA   376/378
(99 %)
1 diff
(99.8 %id)
AW024661 Kidney .c 5615 to 5990 379 to 3   tiling clone,   377/379
(99 %)
0 diff
(100 %id)
BE047159 squamous cell carcinoma, tongue .c 5615 to 5988 385 to 11   AAA   375/375
(100 %)
3 diff
(99.2 %id)
AI911675 adenocarcinoma, Pancreas .c 5619 to 5988 373 to 3       371/376
(98 %)
0 diff
(100 %id)
AI202714 Prostate .c 5623 to 5990 373 to 6       368/373
(98 %)
0 diff
(100 %id)
AA732531 germinal center B cell .c 5630 to 5988 383 to 25   AAA   359/359
(100 %)
2 diff
(99.5 %id)
AI341433 pooled germ cell tumors .c 5633 to 5988 365 to 10       356/365
(97 %)
0 diff
(100 %id)
AI352338 pooled germ cell tumors .c 5634 to 5988 359 to 5       355/359
(98 %)
0 diff
(100 %id)
BQ446954 Knee, Osteoarthritic Cartilage .c 5634 to 5988 373 to 19   AAA   355/355
(100 %)
2 diff
(99.5 %id)
BU629928 cell lines, Chondrosarcoma .c 5634 to 5989 374 to 19   AAA   356/356
(100 %)
2 diff
(99.5 %id)
AI369713 anaplastic oligodendroglioma, brain .c 5641 to 5988 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
AI474801 Kidney .c 5641 to 5988 350 to 3       348/350
(99 %)
0 diff
(100 %id)
AW874484 tumor, uterus .c 5660 to 5988 351 to 23   AAA   329/329
(100 %)
3 diff
(99.1 %id)
AA714570 germinal center B cell .c 5665 to 5988 348 to 25   AAA   324/324
(100 %)
2 diff
(99.4 %id)
BF445283 sympathetic trunk .c 5683 to 5988 307 to 2       306/307
(99 %)
0 diff
(100 %id)
AI344100 colon, colon tumor, RER+ .c 5685 to 5988 311 to 8       304/311
(97 %)
0 diff
(100 %id)
AA339468 brain .c 5699 to 5989 293 to 1     Submitted on the opposite strand 293/293
(100 %)
4 diff
(98.7 %id)
AI669323 Prostate .c 5719 to 5989 285 to 15   AAA   271/271
(100 %)
1 diff
(99.7 %id)
AI675965 Prostate .c 5719 to 5989 281 to 11   AAA   271/271
(100 %)
1 diff
(99.7 %id)
AI444991 colon, moderately-differentiated adenocarcinoma .c 5761 to 5990 231 to 2       230/231
(99 %)
0 diff
(100 %id)
AW050668 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 5783 to 5986 204 to 1       204/204
(100 %)
2 diff
(99.1 %id)
BP420646 small intestine .c 5785 to 5990 1 to 206     Submitted on the opposite strand 206/209
(98 %)
1 diff
(99.6 %id)
CB110895 Liver .d 1 to 606 1 to 606 Q179R tiling clone,   606/606
(100 %)
1 diff
(99.9 %id)
AK127021 brain .e-u 1 to 4658 2 to 4657 K32R G118D P147R A148L S149P ... tiling clone, available from FLJ,   4657/4657
(100 %)
15 diff
(99.7 %id)
DA232148 brain .e-u 1 to 583 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA095950 cerebellum .f 1 to 542 2 to 543 exact tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
BU621124 cell lines, Chondrosarcoma .g 1 to 651 671 to 19 A12X L52X T53X R54S G55R ... tiling clone, AAA   653/653
(100 %)
2 diff
(99.7 %id)
BG961632 colon .h 1 to 388 25 to 412 S31R tiling clone,   388/412
(94 %)
6 diff
(98.6 %id)
DA121917 cerebellum .i 63 to 485 129 to 551 E2N L3S L4W T5A S6Q ... tiling clone, capped   537/550
(97 %)
7 diff
(98.8 %id)
DB328998 placenta .i 370 to 864 1 to 495   tiling clone, Submitted on the opposite strand 495/495
(100 %)
1 diff
(99.8 %id)
T82700   .j-u 1 to 186 182 to 1 E3S F4S F5L E6N M7P ... tiling clone,   182/184
(98 %)
8 diff
(95.7 %id)
AB028962 brain Gene RAP1GAP2, variant not shown       available from KIAA, Suspected internal deletion, this clone was ignored    
AK124640 cerebellum Gene RAP1GAP2, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
TI_1968234577   Gene RAP1GAP2, variant not shown         Suspected internal deletion, this clone was ignored    
TI_1968233601   Gene RAP1GAP2, variant not shown         This clone was ignored    
TI_1968235481   Gene RAP1GAP2, variant not shown         This clone was ignored    
DB299828 cerebellum Gene RAP1GAP2, variant not shown         Suspected internal deletion, this clone was ignored    
DA110351 cerebellum Gene RAP1GAP2, variant not shown       capped Suspected internal deletion, this clone was ignored    
BE208439 lung, small cell carcinoma Gene RAP1GAP2, variant not shown         This clone was ignored    
AW731864 lung, small cell carcinoma Gene RAP1GAP2, variant not shown         This clone was ignored    
BM554146 brain, medulla Gene RAP1GAP2, variant not shown         This clone was ignored    
DA882708   Gene RAP1GAP2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB330380   Gene RAP1GAP2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C