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Gene FRMD4ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
262 supporting clones for gene FRMD4A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB037715 brain .a 1 to 6815 1 to 6816 G859C tiling clone, available from KIAA,   6816/6816
(100 %)
10 diff
(99.9 %id)
BC151244 Clones donated by Kazusa DNA Research Inst. .a 1 to 6815 12 to 6827 G859C tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 6816/6816
(100 %)
10 diff
(99.9 %id)
NM_018027.3   .a 18 to 6821 1 to 6804 exact RefSeq,   6804/6804
(100 %)
0 diff
(100 %id)
BP219101 caudate nucleus .a 22 to 505 1 to 481       481/583
(82 %)
14 diff
(97.6 %id)
DA195652 amygdala .a 77 to 640 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BP228667 brain .a 183 to 781 1 to 599       599/599
(100 %)
3 diff
(99.5 %id)
BP201800 amygdala .a 261 to 843 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA798226 brain .a 746 to 1285 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
BF769431 epid_tumor .a 747 to 1244 28 to 525       498/525
(94 %)
7 diff
(98.7 %id)
BG761495 melanotic melanoma, high MDR (cell line), skin .a 942 to 1715 1 to 774       774/774
(100 %)
6 diff
(99.3 %id)
BF835988 head_neck .a 1072 to 1549 12 to 489       478/489
(97 %)
6 diff
(98.8 %id)
BF838233 head_neck .a 1072 to 1549 12 to 489       478/489
(97 %)
6 diff
(98.8 %id)
BG339394 leiomyosarcoma cell line, uterus .a 1361 to 2091 1 to 735       733/787
(93 %)
35 diff
(95.6 %id)
AI351347 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1418 to 1836 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
AI375796 uterus .a 1539 to 1836 298 to 1       298/298
(100 %)
0 diff
(100 %id)
AI884765 anaplastic oligodendroglioma, brain .a 1565 to 1836 272 to 1       272/272
(100 %)
0 diff
(100 %id)
BG009148 placenta_normal .a 1590 to 1828 1 to 239       239/244
(97 %)
1 diff
(99.6 %id)
BF023607   .a 1657 to 1965 1 to 309       309/309
(100 %)
0 diff
(100 %id)
CV570125 cornea, eye .a 1826 to 2437 1 to 612       612/612
(100 %)
0 diff
(100 %id)
AA053902 eye, retina .a 1919 to 2420 11 to 509       499/546
(91 %)
10 diff
(98.2 %id)
CU456498 epidermis .a 2012 to 2630 619 to 2     Submitted on the opposite strand 618/619
(99 %)
3 diff
(99.6 %id)
CN358034 embryonic stem cells, DMSO-treated H9 cellline .a 2288 to 2750 1 to 463       463/463
(100 %)
2 diff
(99.6 %id)
CX868968 embryonic stem .a 2390 to 3181 1 to 792     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 792/792
(100 %)
0 diff
(100 %id)
BG740114 skin .a 2851 to 3326 1 to 478   tiling clone,   478/659
(72 %)
4 diff
(99.4 %id)
D61536   .a 2904 to 3115 213 to 1     Submitted on the opposite strand 213/213
(100 %)
2 diff
(99.1 %id)
BM690124 eye, human retina .a 2978 to 3390 9 to 421       413/423
(97 %)
2 diff
(99.6 %id)
BG209357   .a 3490 to 4195 1 to 705       705/787
(89 %)
10 diff
(98.8 %id)
AL121124 melanoma (MeWo cell line) .a 3502 to 3954 1 to 453       453/455
(99 %)
2 diff
(99.6 %id)
BQ329693 lung_normal .a 3515 to 3875 1 to 360       360/362
(99 %)
18 diff
(95.1 %id)
AI807275 pooled .a 3517 to 3761 250 to 6       245/250
(98 %)
0 diff
(100 %id)
W01068 liver and spleen .a 3518 to 3776 1 to 260   fully sequenced,   260/260
(100 %)
1 diff
(99.7 %id)
BG033195 breast, mammary adenocarcinoma, cell line .a 3518 to 4175 1 to 654       654/654
(100 %)
4 diff
(99.4 %id)
CA438484 lung, Metastatic Chondrosarcoma .a 3536 to 4217 699 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 681/681
(100 %)
5 diff
(99.3 %id)
T95240 liver and spleen .a 3541 to 3836 1 to 297   fully sequenced,   297/297
(100 %)
3 diff
(99.0 %id)
T96467 liver and spleen .a 3541 to 3804 1 to 266       266/403
(66 %)
7 diff
(98.3 %id)
BE894984 melanotic melanoma, skin .a 3555 to 4258 1 to 704       704/1012
(69 %)
25 diff
(97.6 %id)
CN358033 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3613 to 4140 1 to 528       528/528
(100 %)
5 diff
(99.1 %id)
BQ329690 lung_normal .a 3619 to 3891 1 to 276       276/279
(98 %)
20 diff
(92.9 %id)
TI_153987837   .a 3623 to 4224 668 to 67       602/715
(84 %)
0 diff
(100 %id)
R42807 whole brain .a 3626 to 3895 272 to 1       272/272
(100 %)
3 diff
(98.9 %id)
BF573253 melanotic melanoma, high MDR, skin .a 3657 to 4409 1 to 749       749/874
(85 %)
35 diff
(96.0 %id)
BM995489 lung, Metastatic Chondrosarcoma .a 3659 to 4217 577 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 559/559
(100 %)
1 diff
(99.9 %id)
CN358029 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3670 to 4361 12 to 703       692/703
(98 %)
6 diff
(99.2 %id)
TI_154103914   .a 3688 to 4634 1018 to 89   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 930/977
(95 %)
23 diff
(97.7 %id)
TI_154135311   .a 3712 to 4217 592 to 87   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 506/979
(51 %)
31 diff
(96.9 %id)
TI_57166893   .a 3748 to 4384 34 to 671       638/672
(94 %)
4 diff
(99.5 %id)
AW515645 pooled germ cell tumors .a 3749 to 4208 469 to 10       460/469
(98 %)
0 diff
(100 %id)
BI833802 pooled pancreas and spleen .a 3749 to 4384 1 to 637       637/638
(99 %)
4 diff
(99.4 %id)
AI057314 liver and spleen .a 3756 to 4211 456 to 1       456/456
(100 %)
1 diff
(99.8 %id)
AI033520 liver and spleen .a 3766 to 4209 443 to 1       443/443
(100 %)
4 diff
(99.1 %id)
N70215 liver and spleen .a 3770 to 4209 442 to 1   fully sequenced,   442/442
(100 %)
8 diff
(98.2 %id)
AA054215 eye, retina .a 3774 to 4197 424 to 1       424/424
(100 %)
3 diff
(99.3 %id)
AW204183   .a 3774 to 4201 441 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 428/429
(99 %)
4 diff
(99.1 %id)
AA552149 colon .a 3778 to 4191 413 to 1       413/413
(100 %)
2 diff
(99.6 %id)
AA057671 cornea .a 3780 to 4114 341 to 1       341/350
(97 %)
13 diff
(96.3 %id)
T95130 liver and spleen .a 3826 to 4191 373 to 1   fully sequenced,   373/373
(100 %)
14 diff
(96.3 %id)
AW275564 pooled .a 3888 to 4201 315 to 1       315/315
(100 %)
2 diff
(99.4 %id)
AW796308 uterus .a 3891 to 4033 155 to 10       146/155
(94 %)
0 diff
(100 %id)
AI637901 pooled germ cell tumors .a 3921 to 4217 297 to 1       297/297
(100 %)
0 diff
(100 %id)
AW197404 pooled germ cell tumors .a 3921 to 4217 297 to 1       297/297
(100 %)
0 diff
(100 %id)
BG419246 Kidney, renal cell adenocarcinoma .a 3938 to 4635 1 to 707   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 707/707
(100 %)
19 diff
(97.4 %id)
CX868890 embryonic stem .a 3939 to 4635 721 to 25   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 697/697
(100 %)
1 diff
(99.9 %id)
BQ955357 sciatic nerve .a 3940 to 4483 10 to 554   tiling clone,   545/1403
(38 %)
4 diff
(99.8 %id)
CA446101 Chondrosarcoma, Left Pelvis .a 3965 to 4634 688 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 670/670
(100 %)
1 diff
(99.9 %id)
AW860886 colon .a 3973 to 4533 1 to 561       561/561
(100 %)
4 diff
(99.3 %id)
BE770575 prostate_tumor .a 4013 to 4156 1 to 146       146/146
(100 %)
8 diff
(94.6 %id)
BE770576 prostate_tumor .a 4013 to 4279 1 to 266       266/276
(96 %)
8 diff
(97.2 %id)
BE770597 prostate_tumor .a 4017 to 4279 16 to 282       267/292
(91 %)
6 diff
(98.0 %id)
BE770604 prostate_tumor .a 4018 to 4278 12 to 273       262/284
(92 %)
8 diff
(97.2 %id)
FN150132 breast carcinoma .a 4042 to 4137 91 to 1     Submitted on the opposite strand 91/97
(93 %)
7 diff
(92.8 %id)
BE770605 prostate_tumor .a 4046 to 4279 1 to 238       238/248
(95 %)
9 diff
(96.4 %id)
TI_153990514   .a 4049 to 4621 652 to 81       572/926
(61 %)
0 diff
(100 %id)
BE694379 breast .a 4050 to 4387 339 to 2       338/339
(99 %)
0 diff
(100 %id)
AA456232 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4117 to 4618 1 to 502   fully sequenced,   502/502
(100 %)
1 diff
(99.9 %id)
BP398414 pancreatic islet .a 4121 to 4620 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
AW206463   .a 4123 to 4621 513 to 17       497/513
(96 %)
0 diff
(100 %id)
AA779800   .a 4131 to 4620 502 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 490/490
(100 %)
0 diff
(100 %id)
BQ721631 sympathetic trunk .a 4152 to 4626 1 to 475       475/479
(99 %)
1 diff
(99.8 %id)
AI052696   .a 4162 to 4620 474 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 459/459
(100 %)
0 diff
(100 %id)
AA026744 uterus .a 4163 to 4363 1 to 206       206/206
(100 %)
6 diff
(97.1 %id)
DA468679   .a 4175 to 4737 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
AW470729 2 pooled tumors (clear cell type), Kidney .a 4177 to 4639 464 to 2       463/464
(99 %)
0 diff
(100 %id)
AW382147 head_neck .a 4190 to 4564 28 to 404       377/404
(93 %)
6 diff
(98.6 %id)
AW770258 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 4206 to 4637 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
AA418090 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4210 to 4543 15 to 348       334/348
(95 %)
6 diff
(98.3 %id)
DA204664 brain .a 4213 to 4794 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AI038393 liver and spleen .a 4214 to 4625 412 to 1       412/412
(100 %)
4 diff
(99.1 %id)
AI290170 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4216 to 4621 407 to 2       406/407
(99 %)
0 diff
(100 %id)
AA722734 heart .a 4221 to 4620 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
AL121125 melanoma (MeWo cell line) .a 4222 to 4626 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
AI862414 colon, colon tumor, RER+ .a 4225 to 4635 423 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 410/410
(100 %)
9 diff
(97.9 %id)
R41608 whole brain .a 4228 to 4620 411 to 17   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 395/399
(98 %)
6 diff
(98.5 %id)
AA838611 colon, colon tumor .a 4229 to 4635 407 to 1       407/407
(100 %)
1 diff
(99.8 %id)
AI278083 placenta .a 4245 to 4636 394 to 3       392/394
(99 %)
0 diff
(100 %id)
BE466849 carcinoid, lung .a 4258 to 4625 380 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 368/368
(100 %)
1 diff
(99.8 %id)
BE219944 carcinoid, lung .a 4260 to 4635 376 to 1       376/376
(100 %)
0 diff
(100 %id)
AA418030.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4261 to 4636 376 to 1     also hits gene speesterby 376/376
(100 %)
0 diff
(100 %id)
BF432933 carcinoid, lung .a 4261 to 4632 378 to 7       372/378
(98 %)
0 diff
(100 %id)
BE041555 pooled .a 4274 to 4620 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
BF436294 pooled .a 4277 to 4639 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
AA454623 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4287 to 4620 334 to 1   fully sequenced,   334/334
(100 %)
1 diff
(99.8 %id)
BM717084 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4290 to 4625 1 to 336   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 336/336
(100 %)
1 diff
(99.8 %id)
TI_151777568   .a 4290 to 4626 84 to 416   AAA   333/1287
(25 %)
9 diff
(99.4 %id)
AA578572 lung, lung tumor .a 4293 to 4635 358 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 343/343
(100 %)
1 diff
(99.8 %id)
T16528   .a 4304 to 4620 317 to 1       317/317
(100 %)
1 diff
(99.7 %id)
AW006344 colon .a 4310 to 4636 328 to 2       327/328
(99 %)
0 diff
(100 %id)
AI244848 Kidney .a 4333 to 4635 303 to 1       303/303
(100 %)
1 diff
(99.7 %id)
AW137344   .a 4372 to 4639 281 to 14       268/281
(95 %)
0 diff
(100 %id)
AA707400 liver and spleen .a 4377 to 4950 574 to 1       574/574
(100 %)
5 diff
(99.2 %id)
BI037911 nervous_tumor .a 4383 to 4814 12 to 444   tiling clone,   433/444
(97 %)
6 diff
(98.7 %id)
BQ010241 Chondrosarcoma, Left Pubic Bone .a 4395 to 4620 245 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 227/229
(99 %)
2 diff
(99.2 %id)
AI032028 liver and spleen .a 4410 to 4638 229 to 1       229/229
(100 %)
0 diff
(100 %id)
BI037744 nervous_tumor .a 4436 to 4838 407 to 5       403/407
(99 %)
0 diff
(100 %id)
BE540464 cervix .a 4477 to 4616 1 to 140       140/140
(100 %)
0 diff
(100 %id)
AI094265 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4493 to 4951 458 to 1       458/458
(100 %)
3 diff
(99.4 %id)
AI184281 heart .a 4545 to 4939 395 to 1       395/395
(100 %)
0 diff
(100 %id)
DA747557   .a 4724 to 5262 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA513645 brain .a 4784 to 5176 2 to 395   capped   394/394
(100 %)
2 diff
(99.5 %id)
AK094045 uterus .b 1 to 2145 2 to 2146 exact tiling clone, available from FLJ,   2146/2146
(100 %)
2 diff
(100.0 %id)
AX748427   .b 1 to 2145 2 to 2146 exact     2146/2146
(100 %)
2 diff
(100.0 %id)
DB256484 uterus .b 1 to 570 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB351427 uterus .b 1910 to 2145 236 to 1       236/236
(100 %)
0 diff
(100 %id)
AK001072 whole embryo, mainly head .c 1 to 1740 2 to 1749 E227G tiling clone, available from FLJ,   1749/1749
(100 %)
4 diff
(99.8 %id)
AU119659 whole embryo, mainly head .c 1 to 805 2 to 813   capped   812/813
(99 %)
5 diff
(99.4 %id)
AU145944 whole embryo, mainly head .c 1191 to 1740 547 to 1       547/575
(95 %)
4 diff
(99.4 %id)
AI929348 brain, frontal lobe .d 1 to 494 5 to 498       498/498
(100 %)
2 diff
(99.6 %id)
BP278325   .d 1 to 580 2 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DA647752   .d 1 to 548 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
DA854296 placenta .d 1 to 594 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
AI815575 brain, frontal lobe .d 11 to 494 1 to 484       484/484
(100 %)
0 diff
(100 %id)
BF688331 eye, normal pigmented retinal epithelium .d 296 to 1035 1 to 739   tiling clone,   739/893
(82 %)
33 diff
(96.4 %id)
BF688812 eye, normal pigmented retinal epithelium .d 1182 to 2041 906 to 38   tiling clone,   869/1004
(86 %)
0 diff
(100 %id)
CX870487 embryonic stem .e 1 to 752 1 to 752 exact tiling clone,   752/752
(100 %)
0 diff
(100 %id)
BG761123 melanotic melanoma, high MDR (cell line), skin .f 1 to 913 1 to 912 V151A T152H R153Q M154D P155A ...     912/913
(99 %)
24 diff
(97.4 %id)
BG764644 melanotic melanoma, high MDR (cell line), skin .f 1 to 900 1 to 914 G179W A180S T181Q P183A S184Q ... tiling clone,   914/915
(99 %)
33 diff
(96.4 %id)
BG752665 eye, normal pigmented retinal epithelium .f 1 to 748 1 to 750 V151I Q156P M157D C158V K159Q ...     750/750
(100 %)
9 diff
(98.8 %id)
BE898031 melanotic melanoma, skin .f 22 to 668 1 to 655       655/832
(78 %)
28 diff
(96.7 %id)
DA933932 Spleen .f 150 to 711 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DR762713 embryonic stem .f 327 to 1182 8 to 863   tiling clone,   856/863
(99 %)
7 diff
(99.2 %id)
CB265546 adipose .f 371 to 782 1 to 413       413/413
(100 %)
1 diff
(99.8 %id)
T78789 liver and spleen .f 406 to 777 1 to 378       378/431
(87 %)
13 diff
(97.0 %id)
BG254177 adenocarcinoma, cell line, Prostate .f 458 to 1184 1 to 720       720/938
(76 %)
25 diff
(97.4 %id)
Z43721 brain, total brain .f 513 to 873 1 to 361       361/361
(100 %)
1 diff
(99.8 %id)
R25520 whole brain .f 514 to 898 1 to 396     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 396/465
(85 %)
18 diff
(96.2 %id)
R24759 whole brain .f 514 to 891 1 to 390     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 390/441
(88 %)
18 diff
(96.0 %id)
DA493526 brain .f 570 to 1139 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
R45490 whole brain .f 1304 to 1714 447 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 431/436
(98 %)
27 diff
(93.9 %id)
R45582 whole brain .f 1348 to 1714 396 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 379/382
(99 %)
13 diff
(96.6 %id)
T78406 liver and spleen .f 1375 to 1729 371 to 5   tiling clone,   367/525
(69 %)
0 diff
(100 %id)
Z39782 brain, total brain .f 1416 to 1714 298 to 1   tiling clone,   298/298
(100 %)
3 diff
(99.0 %id)
AK057828 brain .g 1 to 2731 1 to 2729 exact tiling clone, available from FLJ,   2729/2731
(99 %)
13 diff
(99.6 %id)
CN358032 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 121 to 792 1 to 673       673/673
(100 %)
6 diff
(99.2 %id)
BG748223 eye, normal pigmented retinal epithelium .g 180 to 431 1 to 253       253/463
(54 %)
6 diff
(98.8 %id)
DA852360 placenta .g 192 to 761 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA951858 Spleen .g 197 to 751 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DA798953 brain .g 200 to 749 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA102426 cerebellum .g 205 to 784 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
W74006 Pancreas, pancreatic islet .g 205 to 549 1 to 345       345/361
(95 %)
3 diff
(99.2 %id)
W74282 Pancreas, pancreatic islet .g 205 to 553 1 to 349       349/349
(100 %)
2 diff
(99.5 %id)
BM926988 brain .g 213 to 1003 1 to 803       803/1033
(77 %)
51 diff
(95.1 %id)
CV572524 cornea, eye .g 214 to 847 1 to 634       634/634
(100 %)
1 diff
(99.9 %id)
DB264800 uterus .g 503 to 995 2 to 495   capped   494/494
(100 %)
2 diff
(99.6 %id)
AA362808 ovary .g 515 to 860 1 to 347       347/356
(97 %)
8 diff
(97.8 %id)
TI_151732684   .g 540 to 1198 741 to 84 exact AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 658/982
(67 %)
0 diff
(100 %id)
BQ186802 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 541 to 806 1 to 266   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 266/266
(100 %)
1 diff
(99.7 %id)
DA949236 Spleen .g 573 to 1139 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CK299916 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 776 to 1198 441 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 423/423
(100 %)
0 diff
(100 %id)
CD676103 eye, lens .h-u 1 to 571 1 to 571 Q46H tiling clone,   571/571
(100 %)
1 diff
(99.9 %id)
AI133694 Liver .i 1 to 342 199 to 540   tiling clone,   342/540
(63 %)
6 diff
(98.9 %id)
BF358905 lung_tumor .i 17 to 485 469 to 1       469/469
(100 %)
1 diff
(99.8 %id)
DB487088.
matches multiple genes
hypothalamus .i 254 to 518 1 to 265     also hits gene swonabu 265/382
(69 %)
2 diff
(99.5 %id)
DB501420.
matches multiple genes
hypothalamus .i 254 to 724 1 to 471     also hits gene swonabu 471/471
(100 %)
0 diff
(100 %id)
DB503218.
matches multiple genes
hypothalamus .i 254 to 727 1 to 474   tiling clone, also hits gene swonabu 474/474
(100 %)
0 diff
(100 %id)
AA339270 brain .i 629 to 929 1 to 301   tiling clone,   301/301
(100 %)
1 diff
(99.7 %id)
DB091410 testis .i 801 to 1366 2 to 568 D12G E13* tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DR001544 fetal brain .j 1 to 827 1 to 827 V105X C112W V113X tiling clone,   827/827
(100 %)
7 diff
(99.2 %id)
BG204420   .k 1 to 638 1 to 639 D61Y tiling clone,   639/647
(98 %)
7 diff
(99.0 %id)
CR746911 melanotic melanoma, skin .l 1 to 408 89 to 496       408/496
(82 %)
6 diff
(98.8 %id)
BC108709 Skin, melanotic melanoma. .l 1 to 1156 78 to 1233 exact tiling clone, AAA   1156/1233
(93 %)
8 diff
(99.4 %id)
BQ425115 melanotic melanoma, skin .l 1 to 772 76 to 854 exact     779/854
(91 %)
21 diff
(97.6 %id)
CN358030 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .m 1 to 596 1 to 597 exact tiling clone,   597/597
(100 %)
3 diff
(99.5 %id)
BQ901097 sympathetic trunk .m 13 to 123 9 to 119       852/889
(95 %)
24 diff
(97.4 %id)
AK129644 thymus .n-u 1 to 1417 1 to 1416   tiling clone, available from FLJ,   1416/1416
(100 %)
10 diff
(99.3 %id)
BQ710773 Spleen .n-u 591 to 1417 11 to 837   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 827/837
(98 %)
6 diff
(99.3 %id)
TI_154024430   .n-u 754 to 1417 742 to 79   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 664/701
(94 %)
0 diff
(100 %id)
CA439604 lung, Lung Focal Fibrosis .n-u 754 to 1417 682 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 664/680
(97 %)
0 diff
(100 %id)
AA573605   .n-u 1050 to 1419 380 to 12       369/383
(96 %)
0 diff
(100 %id)
AI669250 Prostate .n-u 1218 to 1417 200 to 1       200/200
(100 %)
0 diff
(100 %id)
CB161762 Liver .n-u 1361 to 1847 32 to 520 R64Q R66K R90K tiling clone,   489/520
(94 %)
6 diff
(98.9 %id)
T99248 liver and spleen .n-u 1750 to 2033 295 to 8   tiling clone,   288/494
(58 %)
0 diff
(100 %id)
BQ721198 sympathetic trunk .n-u 1924 to 2804 1 to 900   tiling clone,   900/948
(94 %)
28 diff
(97.1 %id)
BF380339 uterus_tumor .n-u 2243 to 2509 271 to 6   tiling clone,   266/278
(95 %)
0 diff
(100 %id)
DA505874 brain .o-u 1 to 557 2 to 559   tiling clone, capped   558/558
(100 %)
2 diff
(99.7 %id)
H16608 whole brain .o-u 65 to 592 1 to 546   tiling clone, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 546/546
(100 %)
35 diff
(93.6 %id)
H19054 whole brain .o-u 81 to 449 1 to 368       368/368
(100 %)
4 diff
(99.0 %id)
BU071845 insulinoma, Pancreas .o-u 95 to 573 8 to 486     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 479/486
(98 %)
6 diff
(98.8 %id)
BE672213 carcinoid, lung .o-u 122 to 618 502 to 6       497/502
(99 %)
0 diff
(100 %id)
R61567 whole brain .o-u 130 to 585 1 to 465     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 465/465
(100 %)
19 diff
(96.0 %id)
R12874 whole brain .o-u 131 to 488 1 to 362     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 362/366
(98 %)
9 diff
(97.6 %id)
BX419450 brain, fetal brain .o-u 143 to 1067 1 to 924 exact     924/924
(100 %)
4 diff
(99.6 %id)
N98368 lung .o-u 152 to 434 1 to 282       282/283
(99 %)
10 diff
(96.5 %id)
CN358028 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .o-u 167 to 904 1 to 741 S63L L64P P65S H66P S67F ...     741/741
(100 %)
6 diff
(99.2 %id)
BE221199 carcinoid, lung .o-u 188 to 617 429 to 1   tiling clone,   429/431
(99 %)
4 diff
(99.1 %id)
Z42320 brain, total brain .o-u 208 to 547 1 to 340       340/340
(100 %)
0 diff
(100 %id)
AA094554   .o-u 225 to 412 1 to 185       185/186
(99 %)
9 diff
(95.2 %id)
R07078 liver and spleen .o-u 234 to 707 1 to 478 L33F N34K D35*     478/482
(99 %)
27 diff
(94.4 %id)
CX870285 embryonic stem .o-u 308 to 998 1 to 691 exact tiling clone,   691/691
(100 %)
0 diff
(100 %id)
BG742320 skin .o-u 676 to 1486 1 to 811       811/815
(99 %)
4 diff
(99.6 %id)
BG110534 Bone, osteosarcoma, cell line .o-u 688 to 1433 1 to 747       747/793
(94 %)
6 diff
(99.3 %id)
BF361152 ovary .o-u 756 to 1277 1 to 518       518/519
(99 %)
6 diff
(98.9 %id)
BF670719 muscle (skeletal) .o-u 844 to 1414 1 to 574       574/874
(65 %)
14 diff
(98.4 %id)
BM720824 eye, fetal eye .o-u 867 to 1320 1 to 454   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 454/454
(100 %)
1 diff
(99.8 %id)
TI_154097812   .o-u 901 to 1722 910 to 91   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 820/820
(100 %)
20 diff
(97.6 %id)
BQ311724 breast_normal .o-u 912 to 1083 1 to 172       172/188
(91 %)
12 diff
(93.7 %id)
AW020448 cochlea, ear .o-u 960 to 1476 1 to 517       517/517
(100 %)
6 diff
(98.9 %id)
TI_149290592   .o-u 961 to 1727 873 to 113   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 761/915
(83 %)
13 diff
(98.6 %id)
BX409797 brain, fetal brain .o-u 970 to 1725 12 to 766       755/769
(98 %)
4 diff
(99.5 %id)
AV753177 Pituitary .o-u 978 to 1421 1 to 437       437/443
(98 %)
15 diff
(96.7 %id)
CA440745 lung, Metastatic Chondrosarcoma .o-u 978 to 1722 762 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 744/744
(100 %)
2 diff
(99.8 %id)
BX641983   .o-u 1046 to 1727 700 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 682/682
(100 %)
1 diff
(99.9 %id)
BQ021645 lung, Metastatic Chondrosarcoma .o-u 1064 to 1722 677 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 659/659
(100 %)
2 diff
(99.7 %id)
AW827237 hepatic adenoma, Liver .o-u 1099 to 1395 1 to 297       297/297
(100 %)
0 diff
(100 %id)
BM973566 lung .o-u 1132 to 1727 614 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 596/596
(100 %)
2 diff
(99.7 %id)
BG165662 hypernephroma, cell line, Kidney .o-u 1137 to 1727 1 to 588       588/609
(96 %)
11 diff
(98.2 %id)
AA431226   .o-u 1151 to 1509 1 to 358   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 358/358
(100 %)
1 diff
(99.8 %id)
AI672059 Kidney .o-u 1170 to 1727 570 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 558/558
(100 %)
2 diff
(99.7 %id)
BU073361 insulinoma, Pancreas .o-u 1171 to 1727 572 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 557/557
(100 %)
0 diff
(100 %id)
BF000162 colon, colon tumor, RER+ .o-u 1181 to 1725 545 to 1       545/545
(100 %)
0 diff
(100 %id)
AW772345 Kidney .o-u 1199 to 1727 541 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 529/529
(100 %)
2 diff
(99.7 %id)
N70172 lung .o-u 1256 to 1722 474 to 1       474/483
(98 %)
8 diff
(98.4 %id)
BG054627 Kidney .o-u 1259 to 1722 464 to 1       464/464
(100 %)
7 diff
(98.5 %id)
AI862704 lymph node, lymphoma, follicular mixed small and largecell .o-u 1273 to 1728 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
BM676931 eye, fetal eye .o-u 1290 to 1727 451 to 14   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 438/438
(100 %)
2 diff
(99.6 %id)
R61511 whole brain .o-u 1293 to 1727 450 to 12   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 439/439
(100 %)
7 diff
(98.5 %id)
H19344 whole brain .o-u 1297 to 1728 451 to 8       444/451
(98 %)
0 diff
(100 %id)
AI080204 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o-u 1310 to 1728 425 to 7       419/425
(98 %)
0 diff
(100 %id)
AI767980 2 pooled tumors (clear cell type), Kidney .o-u 1321 to 1727 420 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 407/407
(100 %)
2 diff
(99.6 %id)
H16566 whole brain .o-u 1325 to 1722 420 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 408/412
(99 %)
14 diff
(96.7 %id)
BF438617 pooled .o-u 1367 to 1728 366 to 5   tiling clone,   362/366
(98 %)
0 diff
(100 %id)
AI984342 Kidney .o-u 1374 to 1684 312 to 2       311/312
(99 %)
0 diff
(100 %id)
T16688   .o-u 1377 to 1722 346 to 1       346/350
(98 %)
1 diff
(99.8 %id)
AI217478 pooled .o-u 1379 to 1722 359 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 344/344
(100 %)
2 diff
(99.5 %id)
R41262 whole brain .o-u 1395 to 1727 355 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 343/379
(90 %)
17 diff
(95.6 %id)
AI767095 2 pooled tumors (clear cell type), Kidney .o-u 1396 to 1727 357 to 26   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 332/332
(100 %)
7 diff
(97.9 %id)
Z38551 brain, total brain .o-u 1471 to 1716 246 to 1       246/246
(100 %)
1 diff
(99.6 %id)
AA432248   .o-u 1479 to 1722 259 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 244/244
(100 %)
1 diff
(99.6 %id)
AI359566 brain, glioblastoma (pooled) .o-u 1480 to 1727 261 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 248/248
(100 %)
17 diff
(93.2 %id)
AI041000   .o-u 1484 to 1728 247 to 3       245/248
(98 %)
0 diff
(100 %id)
R07033 liver and spleen .o-u 1511 to 1720 210 to 1       210/211
(99 %)
1 diff
(99.6 %id)
BX345338 Placenta Cot 25-normalized .p-u 1 to 1075 1 to 1077 S69T C70H T71S P72C W73T ... tiling clone,   1077/1077
(100 %)
6 diff
(99.5 %id)
BX361357 Placenta Cot 25-normalized .p-u 364 to 1551 1171 to 1   tiling clone,   1171/1180
(99 %)
45 diff
(96.2 %id)
AI656433 pooled germ cell tumors .p-u 969 to 1439 471 to 1   tiling clone,   471/471
(100 %)
1 diff
(99.8 %id)
BX492037   .q-u 1 to 463 463 to 1   tiling clone, Submitted on the opposite strand 463/466
(99 %)
4 diff
(99.2 %id)
BF934098 nervous_tumor .q-u 30 to 417 395 to 12     Submitted on the opposite strand 384/418
(91 %)
0 diff
(100 %id)
AL134758 brain .q-u 60 to 504 1 to 455   tiling clone,   455/456
(99 %)
12 diff
(97.4 %id)
AW893934 nervous_normal .q-u 411 to 1081 1 to 667 F59S F60I R67K tiling clone,   667/670
(99 %)
24 diff
(96.5 %id)
DA801926 brain .r 1 to 853 2 to 499 exact tiling clone, capped   498/498
(100 %)
0 diff
(100 %id)
DA787922.
matches multiple genes
brain .r 481 to 902 83 to 508   tiling clone, capped Submitted on the opposite strand, also hits gene sloykerbo 507/507
(100 %)
4 diff
(99.3 %id)
DA967026 stomach .s 1 to 571 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
R66818 placenta .s 365 to 647 1 to 286 P25L R27G A28L T29Q D30M ... fully sequenced,   286/286
(100 %)
1 diff
(99.7 %id)
BX115097 placenta .s 368 to 873 1 to 506 exact tiling clone, AAA Possibly primed on the genome, locally A rich (25/25 A in genome downstream of last aligned base) 506/506
(100 %)
2 diff
(99.7 %id)
AI479439 anaplastic oligodendroglioma, brain .s 374 to 881 507 to 1 G4E tiling clone,   507/507
(100 %)
2 diff
(99.7 %id)
R67916 placenta .s 617 to 874 263 to 1   fully sequenced,   263/263
(100 %)
2 diff
(99.3 %id)
DA030594   .t-u 1 to 580 2 to 582   tiling clone, capped   581/581
(100 %)
2 diff
(99.7 %id)
BF928103 nervous_tumor .t-u 116 to 543 12 to 436       425/437
(97 %)
8 diff
(98.2 %id)
CV372724 lung_tumor .t-u 173 to 682 1 to 506 exact tiling clone,   506/513
(98 %)
11 diff
(97.9 %id)
BQ016560 lung, Lung Focal Fibrosis .u-u 1 to 671 689 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 671/671
(100 %)
1 diff
(99.9 %id)
DA248475 brain .va-u 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
BE148259 head_neck .va-u 68 to 373 1 to 309       309/322
(95 %)
12 diff
(96.3 %id)
BG003113 placenta_normal .va-u 91 to 545 467 to 15       453/474
(95 %)
0 diff
(100 %id)
BI040117 nervous_tumor .va-u 250 to 497 6 to 253       248/253
(98 %)
6 diff
(97.7 %id)
DB076605 testis .vb 1 to 565 2 to 567 exact tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
BG005479 placenta_normal .vc-u 1 to 467 27 to 495 W5G C23G R28G L35R L37W ... tiling clone,   469/544
(86 %)
26 diff
(95.3 %id)
T83425 liver and spleen .vd-u 1 to 353 13 to 373 T15X C16V F17L I18F S19H ... tiling clone,   361/416
(86 %)
12 diff
(97.2 %id)
AW793821 uterus .ve-u 1 to 250 1 to 247 P3L S4P H6L C7L L9I ... tiling clone,   247/247
(100 %)
4 diff
(98.4 %id)
AK130756.
matches multiple genes
synovial membrane (knee) Gene FRMD4A, variant not shown       available from FLJ, This clone was ignored, also hits gene busker, gymoyby    
AK130756.
matches multiple genes
synovial membrane (knee) Gene busker, variant not shown       available from FLJ, This clone was ignored, also hits gene busker, gymoyby    
AK130756.
matches multiple genes
synovial membrane (knee) Gene gymoyby, variant not shown       available from FLJ, This clone was ignored, also hits gene busker, gymoyby    
AK289693 amygdala Gene FRMD4A, variant not shown         This clone was ignored    
CN358031 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene FRMD4A, variant not shown         Suspected internal deletion, this clone was ignored    
DB359768.
matches multiple genes
whole embryo, mainly body Gene FRMD4A, variant not shown         This clone was ignored, also hits gene bersker    
DB359768.
matches multiple genes
whole embryo, mainly body Gene bersker, variant not shown         This clone was ignored, also hits gene bersker    
DA572694.
matches multiple genes
whole embryo, mainly body Gene FRMD4A, variant not shown       capped This clone was ignored, also hits gene bersker    
DA572694.
matches multiple genes
whole embryo, mainly body Gene bersker, variant not shown       capped This clone was ignored, also hits gene bersker    
AI637792.
matches multiple genes
pooled germ cell tumors Gene FRMD4A, variant not shown         This clone was ignored, also hits gene kosara    
AI637792.
matches multiple genes
pooled germ cell tumors Gene kosara, variant not shown         This clone was ignored, also hits gene kosara    
BE047739.
matches multiple genes
brain, tumor, 5 pooled (see description) Gene FRMD4A, variant not shown         This clone was ignored, also hits gene zerreyby    
BE047739.
matches multiple genes
brain, tumor, 5 pooled (see description) Gene zerreyby, variant not shown         This clone was ignored, also hits gene zerreyby    
AI866520.
matches multiple genes
brain, tumor, 5 pooled (see description) Gene FRMD4A, variant not shown         This clone was ignored, also hits gene zerreyby    
AI866520.
matches multiple genes
brain, tumor, 5 pooled (see description) Gene zerreyby, variant not shown         This clone was ignored, also hits gene zerreyby    
BM013132 brain, neuroblastoma, cell line Gene FRMD4A, variant not shown         This clone was ignored    
BU501722 brain, neuroblastoma, cell line Gene FRMD4A, variant not shown         This clone was ignored    
TI_59382382   Gene FRMD4A, variant not shown         This clone was ignored    
BP432009   Gene FRMD4A, variant not shown         Suspected internal deletion, this clone was ignored    
DA883509   Gene FRMD4A, variant not shown       capped This clone was ignored    
BP353298   Gene FRMD4A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l, .m, .n-u, .o-u, .p-u, .q-u, .r, .s, .t-u, .u-u, .va-u, .vb, .vc-u, .vd-u, .ve-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI