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Gene FOXP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
606 supporting clones for gene FOXP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA518749 brain .a 1 to 554 2 to 556   tiling clone, capped   555/555
(100 %)
3 diff
(99.5 %id)
AK074321   .a 200 to 2592 1 to 2392 R86G L403I tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 2392/2392
(100 %)
6 diff
(99.8 %id)
BP241683 Liver .a 200 to 777 1 to 577   tiling clone,   577/585
(98 %)
6 diff
(99.0 %id)
AF250920   .b 1 to 4937 1 to 4924 exact tiling clone, AAA Possibly primed on the genome, locally A rich (41/42 A in genome downstream of last aligned base) 4924/4924
(100 %)
9 diff
(99.9 %id)
BF341483 brain, glioblastoma with EGFR amplification .b 3991 to 4780 1 to 786       786/801
(98 %)
43 diff
(94.7 %id)
BF241734 bone marrow, from acute myelogenous leukemia .b 3994 to 4656 1 to 658       658/836
(78 %)
40 diff
(95.3 %id)
BF381602 brain, primitive neuroectoderm .b 4001 to 4513 1 to 519       519/847
(61 %)
29 diff
(96.6 %id)
TI_149309278   .b 4001 to 4960 1018 to 69       950/1072
(88 %)
0 diff
(100 %id)
DA256708 caudate nucleus .b 4056 to 4617 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DN920333   .b 4057 to 4112 1 to 55       55/55
(100 %)
1 diff
(98.2 %id)
AI806279 pooled .b 4081 to 4547 467 to 1       467/467
(100 %)
1 diff
(99.8 %id)
AA731507 germinal center B cell .b 4089 to 4556 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
TI_154179294   .b 4092 to 4929 907 to 76     Submitted on the opposite strand 832/832
(100 %)
12 diff
(98.6 %id)
AA748037 germinal center B cell .b 4094 to 4568 1 to 478     Submitted on the opposite strand 478/478
(100 %)
4 diff
(99.2 %id)
BF677205 Prostate .b 4124 to 4719 1 to 599       599/880
(68 %)
38 diff
(95.7 %id)
FN146776 breast carcinoma .b 4132 to 4255 1 to 125       125/125
(100 %)
1 diff
(99.2 %id)
BG392311 embryonal carcinoma, cell line, testis .b 4144 to 4906 1 to 750       750/753
(99 %)
22 diff
(97.1 %id)
FN153764 breast carcinoma .b 4150 to 4268 1 to 114       114/114
(100 %)
5 diff
(95.7 %id)
AW511128 pooled .b 4161 to 4535 386 to 12       375/386
(97 %)
0 diff
(100 %id)
AA946684 germinal center B cell .b 4167 to 4609 1 to 443     Submitted on the opposite strand 443/443
(100 %)
3 diff
(99.4 %id)
BM360860 rectum .b 4178 to 4437 1 to 260       260/260
(100 %)
2 diff
(99.3 %id)
TI_149290742   .b 4182 to 4961 833 to 63       771/1004
(76 %)
0 diff
(100 %id)
AI268375 carcinoid, lung .b 4192 to 4716 525 to 1       525/525
(100 %)
1 diff
(99.9 %id)
CF137681 lymph .b 4212 to 4529 279 to 596       318/596
(53 %)
6 diff
(99.0 %id)
TI_154167263   .b 4212 to 4665 351 to 805       455/808
(56 %)
9 diff
(98.9 %id)
AA904355 pooled .b 4216 to 4547 332 to 1       332/332
(100 %)
0 diff
(100 %id)
AU253003 neuroblastoma .b 4218 to 4919 699 to 1       699/700
(99 %)
19 diff
(97.3 %id)
AI218107 pooled .b 4228 to 4546 319 to 1       319/319
(100 %)
1 diff
(99.7 %id)
CN336561 embryonic stem cells, DMSO-treated H9 cellline .b 4238 to 4938 1 to 701       701/701
(100 %)
2 diff
(99.8 %id)
FN148854 breast carcinoma .b 4247 to 4326 1 to 81       81/81
(100 %)
3 diff
(96.3 %id)
CA426632 cell lines, Chondrosarcoma .b 4253 to 4956 704 to 1   tiling clone,   704/704
(100 %)
0 diff
(100 %id)
CF146772 CNCAP(3)T-225 cell line, Prostate .b 4265 to 4930 673 to 7     Submitted on the opposite strand 667/673
(99 %)
0 diff
(100 %id)
BU687689 lung .b 4273 to 4956 685 to 1       685/686
(99 %)
2 diff
(99.8 %id)
BG534232 lung .b 4274 to 4917 1 to 675       675/682
(98 %)
44 diff
(93.6 %id)
BM973701 lung .b 4299 to 4956 658 to 1       658/658
(100 %)
2 diff
(99.7 %id)
BM787872 stomach .b 4305 to 4896 1 to 591       591/591
(100 %)
1 diff
(99.9 %id)
BF831606 head_neck .b 4318 to 4760 1 to 444       444/445
(99 %)
7 diff
(98.5 %id)
BF335737 colon .b 4324 to 4589 21 to 283       263/283
(92 %)
14 diff
(95.1 %id)
CV316806 uterus_tumor .b 4350 to 4722 386 to 4     Submitted on the opposite strand 383/386
(99 %)
0 diff
(100 %id)
BG285488 bladder, transitional cell papilloma, cell line .b 4377 to 4986 1 to 619       619/1120
(55 %)
26 diff
(97.7 %id)
BG113684 Bone, osteosarcoma, cell line .b 4382 to 4957 1 to 575       575/575
(100 %)
13 diff
(97.8 %id)
AA701667 liver and spleen .b 4397 to 4938 542 to 1       542/542
(100 %)
1 diff
(99.9 %id)
H54122.
matches multiple genes
liver and spleen .b 4407 to 4772 1 to 377     also hits gene PIM1 377/378
(99 %)
14 diff
(96.3 %id)
BX487568   .b 4412 to 4957 546 to 1     Submitted on the opposite strand 546/546
(100 %)
0 diff
(100 %id)
N40363 melanocyte .b 4436 to 4950 1 to 519   fully sequenced,   519/519
(100 %)
10 diff
(98.1 %id)
AA741050 germinal center B cell .b 4436 to 4965 531 to 1       531/531
(100 %)
6 diff
(98.9 %id)
W44635 senescent fibroblast .b 4439 to 4943 1 to 515   fully sequenced,   515/515
(100 %)
19 diff
(96.4 %id)
CB114624 Liver .b 4449 to 4933 484 to 1     Submitted on the opposite strand 484/484
(100 %)
3 diff
(99.4 %id)
CV312355 testis_normal .b 4485 to 4748 266 to 1     Submitted on the opposite strand 266/266
(100 %)
17 diff
(93.7 %id)
BP419230 small intestine .b 4486 to 4973 488 to 1       488/488
(100 %)
2 diff
(99.6 %id)
AA280917 germinal center B cell .b 4499 to 4915 9 to 425       417/425
(98 %)
6 diff
(98.6 %id)
AA286954 germinal center B cell .b 4503 to 4910 1 to 408       408/408
(100 %)
0 diff
(100 %id)
AI832023 lymph node, lymphoma, follicular mixed small and largecell .b 4510 to 4942 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AW117937 esophagus, squamous cell carcinoma .b 4517 to 4938 424 to 2       423/424
(99 %)
0 diff
(100 %id)
AA608679 lung, lung carcinoma .b 4520 to 4944 425 to 1       425/425
(100 %)
0 diff
(100 %id)
BE222409 carcinoid, lung .b 4522 to 4938 417 to 1       417/417
(100 %)
1 diff
(99.8 %id)
N45595 multiple sclerosis lesions .b 4523 to 4815 1 to 293       293/297
(98 %)
1 diff
(99.7 %id)
BF196128 carcinoid, lung .b 4523 to 4942 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AA743100 germinal center B cell .b 4536 to 4948 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
BP420505 small intestine .b 4544 to 4942 1 to 399     Submitted on the opposite strand 399/399
(100 %)
3 diff
(99.3 %id)
AW151588 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 4546 to 4959 415 to 1       415/415
(100 %)
8 diff
(98.1 %id)
AI735679 aorta .b 4569 to 4941 373 to 1       373/373
(100 %)
5 diff
(98.7 %id)
BP387087 pancreatic islet .b 4571 to 4937 1 to 369     Submitted on the opposite strand 369/369
(100 %)
4 diff
(99.0 %id)
R97283 liver and spleen .b 4574 to 4941 1 to 369       369/369
(100 %)
3 diff
(99.2 %id)
AW517787 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 4578 to 4938 361 to 1       361/361
(100 %)
0 diff
(100 %id)
CD520330 pooled .b 4593 to 4938 1 to 346       346/347
(99 %)
2 diff
(99.5 %id)
AW517795 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 4598 to 4938 338 to 1       338/338
(100 %)
3 diff
(99.2 %id)
BP425647 small intestine .b 4601 to 4808 1 to 208     Submitted on the opposite strand 208/208
(100 %)
4 diff
(98.1 %id)
FN139688 breast carcinoma .b 4614 to 4719 1 to 109       109/109
(100 %)
4 diff
(96.4 %id)
N22641   .b 4615 to 4894 281 to 1       281/281
(100 %)
3 diff
(99.0 %id)
AA364204 pineal body .b 4617 to 4938 1 to 322       322/322
(100 %)
1 diff
(99.7 %id)
AW953797   .b 4618 to 4938 1 to 321   AAA Possibly primed on the genome, locally A rich (41/41 A in genome downstream of last aligned base) 321/321
(100 %)
0 diff
(100 %id)
BQ018049 Fibrosarcoma .b 4630 to 5280 668 to 19   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 650/650
(100 %)
3 diff
(99.6 %id)
FN144250 breast carcinoma .b 4641 to 4747 1 to 111       111/111
(100 %)
4 diff
(96.4 %id)
BE246747 leukopheresis .b 4641 to 4938 298 to 1       298/298
(100 %)
4 diff
(98.7 %id)
FN141486 breast carcinoma .b 4652 to 4757 104 to 1     Submitted on the opposite strand 104/104
(100 %)
2 diff
(98.1 %id)
FN131697 breast carcinoma .b 4654 to 4741 87 to 1     Submitted on the opposite strand 87/105
(82 %)
3 diff
(97.2 %id)
TI_149295271   .b 4661 to 5305 705 to 63       643/1060
(60 %)
0 diff
(100 %id)
BM985375 lung .b 4661 to 5280 636 to 19   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 618/626
(98 %)
3 diff
(99.6 %id)
FN060613 breast carcinoma .b 4665 to 4761 1 to 98       98/98
(100 %)
1 diff
(99.0 %id)
H65224 nose, olfactory epithelium .b 4679 to 4919 242 to 1       242/242
(100 %)
1 diff
(99.6 %id)
AA743131 germinal center B cell .b 4682 to 4948 267 to 1       267/267
(100 %)
0 diff
(100 %id)
CN285832 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 4684 to 4938 1 to 255   AAA Possibly primed on the genome, locally A rich (41/41 A in genome downstream of last aligned base) 255/255
(100 %)
1 diff
(99.7 %id)
AW517186 cervix .b 4687 to 4833 1 to 147     Submitted on the opposite strand 147/147
(100 %)
7 diff
(95.3 %id)
BE246924 leukopheresis .b 4702 to 4937 1 to 236       236/237
(99 %)
6 diff
(97.5 %id)
C02342   .b 4714 to 4938 1 to 225       225/225
(100 %)
0 diff
(100 %id)
BX487765   .b 4716 to 5296 578 to 3   tiling clone, Submitted on the opposite strand 576/578
(99 %)
0 diff
(100 %id)
AV738348 cord Blood .b 4732 to 4936 8 to 208   AAA Possibly primed on the genome, locally A rich (41/43 A in genome downstream of last aligned base) 201/208
(96 %)
6 diff
(97.2 %id)
AA908689 carcinoid, lung .b 4742 to 4965 224 to 1       224/224
(100 %)
7 diff
(96.9 %id)
AW183246 pooled .b 4752 to 4948 197 to 1       197/197
(100 %)
1 diff
(99.5 %id)
BQ018392 lung, Metastatic Chondrosarcoma .b 4758 to 5300 1 to 545     Submitted on the opposite strand 545/557
(97 %)
9 diff
(98.4 %id)
AI435854 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4763 to 5280 516 to 1       516/516
(100 %)
6 diff
(98.9 %id)
AA811453 germinal center B cell .b 4771 to 5293 520 to 1       520/520
(100 %)
3 diff
(99.5 %id)
AA490197 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4777 to 4857 1 to 81       81/81
(100 %)
0 diff
(100 %id)
FN176905 breast carcinoma .b 4789 to 4870 1 to 78       78/78
(100 %)
4 diff
(94.9 %id)
DN912702   .b 4793 to 4930 138 to 1       138/138
(100 %)
0 diff
(100 %id)
AI809498 pooled .b 4799 to 5284 484 to 1       484/484
(100 %)
8 diff
(98.4 %id)
AA156735 uterus .b 4807 to 4978 1 to 172       172/172
(100 %)
0 diff
(100 %id)
AA625352 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4807 to 4971 1 to 165       165/165
(100 %)
0 diff
(100 %id)
AI909028 breast .b 4815 to 5073 258 to 1       258/259
(99 %)
4 diff
(98.5 %id)
DB550302 hippocampus .b 4822 to 5280 1 to 463     Submitted on the opposite strand 463/463
(100 %)
4 diff
(99.2 %id)
AI082190 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4841 to 5280 440 to 1       440/440
(100 %)
4 diff
(99.1 %id)
AW241912 pooled .b 4923 to 5283 360 to 1       360/360
(100 %)
4 diff
(98.9 %id)
N27548 melanocyte .b 4924 to 5280 359 to 1   fully sequenced,   359/359
(100 %)
3 diff
(99.2 %id)
W44586 senescent fibroblast .b 4932 to 5286 355 to 1   fully sequenced,   355/355
(100 %)
0 diff
(100 %id)
AI074719 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4935 to 5280 343 to 1       343/343
(100 %)
6 diff
(98.3 %id)
BI491815 cochlea, ear .b 4936 to 5251 320 to 1       320/320
(100 %)
19 diff
(94.1 %id)
AA287961 germinal center B cell .b 4941 to 5354 415 to 1       415/415
(100 %)
2 diff
(99.6 %id)
AA995689 2 pooled tumors (clear cell type), Kidney .b 4948 to 5283 336 to 1       336/336
(100 %)
0 diff
(100 %id)
AA629148 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4967 to 5067 100 to 1       100/100
(100 %)
1 diff
(99.0 %id)
AA807044 germinal center B cell .b 4971 to 5280 331 to 22   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 310/310
(100 %)
2 diff
(99.4 %id)
AA688339 normal prostate, Prostate .b 4980 to 5181 201 to 1       201/201
(100 %)
1 diff
(99.6 %id)
BU189836 eye, retinoblastoma .b 4981 to 5591 1 to 611   tiling clone, AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 611/611
(100 %)
0 diff
(100 %id)
AI382742 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4986 to 5272 292 to 6       287/292
(98 %)
0 diff
(100 %id)
AI694001 colon .b 4992 to 5285 294 to 1       294/294
(100 %)
1 diff
(99.7 %id)
AI718622 aorta .b 4993 to 5283 290 to 1       290/290
(100 %)
1 diff
(99.7 %id)
FN120833 breast carcinoma .b 5007 to 5114 103 to 1     Submitted on the opposite strand 103/103
(100 %)
5 diff
(95.2 %id)
AA587961 colon, colon tumor RER+ .b 5008 to 5201 194 to 1       194/196
(98 %)
0 diff
(100 %id)
AI128599 heart .b 5024 to 5354 331 to 1       331/331
(100 %)
0 diff
(100 %id)
AA729134 pooled germ cell tumors .b 5030 to 5284 256 to 1       256/256
(100 %)
1 diff
(99.7 %id)
AI832370 colon .b 5040 to 5280 241 to 1       241/241
(100 %)
2 diff
(99.2 %id)
AW019947 cochlea, ear .b 5050 to 5280 22 to 252   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 231/252
(91 %)
6 diff
(97.7 %id)
DN920332   .b 5065 to 5584 521 to 3       519/521
(99 %)
0 diff
(100 %id)
AW080845 colon, moderately differentiated adenocarcinoma .b 5070 to 5586 526 to 11   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 516/516
(100 %)
9 diff
(98.3 %id)
AA688340 normal prostate, Prostate .b 5080 to 5282 203 to 1       203/203
(100 %)
1 diff
(99.6 %id)
FN058139 breast carcinoma .b 5081 to 5172 91 to 1     Submitted on the opposite strand 91/92
(98 %)
1 diff
(99.0 %id)
FN129673 breast carcinoma .b 5106 to 5195 89 to 1     Submitted on the opposite strand 89/93
(95 %)
1 diff
(99.0 %id)
FN158529 breast carcinoma .b 5115 to 5208 95 to 2     Submitted on the opposite strand 94/95
(98 %)
0 diff
(100 %id)
N48804 multiple sclerosis lesions .b 5117 to 5587 476 to 1       476/480
(99 %)
10 diff
(98.0 %id)
BM930566 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 5120 to 5585 1 to 467   fully sequenced, Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 467/467
(100 %)
7 diff
(98.6 %id)
AA045905 uterus .b 5150 to 5281 9 to 140       132/140
(94 %)
5 diff
(96.5 %id)
GD136899   .b 5154 to 5222 1 to 68       68/70
(97 %)
2 diff
(97.2 %id)
DB546180 hippocampus .b 5168 to 5586 1 to 419   AAA Submitted on the opposite strand 419/419
(100 %)
1 diff
(99.8 %id)
H54332.
matches multiple genes
liver and spleen .b 5174 to 5561 395 to 1     also hits gene RBM14andRBM4 395/401
(98 %)
12 diff
(97.1 %id)
BF445309 Prostate .b 5179 to 5354 176 to 1       176/176
(100 %)
2 diff
(98.9 %id)
AI952240 lung, two pooled squamous cell carcinomas .b 5190 to 5587 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
AI370846   .b 5197 to 5589 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
BM684152 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 5197 to 5591 414 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 396/396
(100 %)
1 diff
(99.8 %id)
D59993   .b 5206 to 5549 1 to 348       348/348
(100 %)
10 diff
(97.2 %id)
D81095 brain .b 5206 to 5580 1 to 376       376/376
(100 %)
1 diff
(99.8 %id)
AA506419 colon .b 5209 to 5587 379 to 1       379/379
(100 %)
0 diff
(100 %id)
AI557555 Prostate .b 5237 to 5590 8 to 361     Submitted on the opposite strand 354/636
(55 %)
6 diff
(99.1 %id)
AI417709 Prostate .b 5241 to 5590 354 to 5       350/354
(98 %)
0 diff
(100 %id)
R88105 breast .b 5278 to 5677 1 to 401       401/464
(86 %)
8 diff
(98.3 %id)
BE181154 head_neck .b 5280 to 5611 346 to 18     Submitted on the opposite strand 329/401
(82 %)
0 diff
(100 %id)
AW837866 leiomios .b 5283 to 5526 273 to 24       250/275
(90 %)
0 diff
(100 %id)
C14240   .b 5289 to 5522 1 to 235       235/236
(99 %)
7 diff
(97.1 %id)
D59635   .b 5289 to 5635 1 to 347       347/354
(98 %)
5 diff
(98.6 %id)
D80152 brain .b 5290 to 5609 1 to 319       319/321
(99 %)
2 diff
(99.4 %id)
D80364 brain .b 5292 to 5655 1 to 359       359/359
(100 %)
8 diff
(97.8 %id)
BF849033 lung_normal .b 5298 to 5640 385 to 39     Submitted on the opposite strand 347/385
(90 %)
0 diff
(100 %id)
R97047 liver and spleen .b 5303 to 5586 291 to 1       291/291
(100 %)
9 diff
(97.0 %id)
BM310080 insulinoma, Pancreas .b 5306 to 5586 8 to 288   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 281/288
(97 %)
6 diff
(98.0 %id)
BM310346 insulinoma, Pancreas .b 5306 to 5507 202 to 1       202/208
(97 %)
0 diff
(100 %id)
BU781893 insulinoma, Pancreas .b 5306 to 5586 8 to 288   fully sequenced, AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 281/288
(97 %)
6 diff
(98.0 %id)
BF820953 kidney_tumor .b 5312 to 5566 259 to 2     Submitted on the opposite strand 258/259
(99 %)
0 diff
(100 %id)
FN093134 breast carcinoma .b 5325 to 5424 98 to 3     Submitted on the opposite strand 96/98
(97 %)
0 diff
(100 %id)
CA803164 stomach .b 5328 to 5472 1 to 145       145/145
(100 %)
1 diff
(99.4 %id)
H45479 breast .b 5329 to 5610 284 to 1       284/401
(70 %)
2 diff
(99.6 %id)
H21903 breast .b 5329 to 5631 304 to 1       304/371
(81 %)
1 diff
(99.8 %id)
AA470494   .b 5330 to 5679 9 to 358       350/358
(97 %)
6 diff
(98.4 %id)
BU782804 insulinoma, Pancreas .b 5345 to 5567 223 to 1   fully sequenced, Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 223/223
(100 %)
0 diff
(100 %id)
AW302371 brain, three pooled meningiomas .b 5353 to 5592 243 to 4       240/243
(98 %)
0 diff
(100 %id)
AI719952 aorta .b 5359 to 5586 228 to 1       228/228
(100 %)
0 diff
(100 %id)
BM147266 leukopheresis .b 5383 to 5894 1 to 512       512/512
(100 %)
5 diff
(99.1 %id)
BQ183569 Knee, Osteoarthritic Cartilage .b 5416 to 5980 583 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 565/565
(100 %)
2 diff
(99.7 %id)
FN136629 breast carcinoma .b 5435 to 5555 118 to 1     Submitted on the opposite strand 118/118
(100 %)
5 diff
(95.8 %id)
AA923093 carcinoid, lung .b 5452 to 5672 1 to 220     Submitted on the opposite strand 220/220
(100 %)
2 diff
(99.1 %id)
BF212038 bone marrow, from chronic myelogenous leukemia .b 5454 to 5969 1 to 513       513/516
(99 %)
32 diff
(93.8 %id)
AW193243 adenocarcinoma, Pancreas .b 5481 to 5592 112 to 1       112/112
(100 %)
0 diff
(100 %id)
GD144083   .b 5508 to 5696 189 to 1     Submitted on the opposite strand 189/191
(98 %)
2 diff
(99.0 %id)
AV745421 Pituitary .b 5525 to 5828 1 to 304   AAA Possibly primed on the genome, locally A rich (21/22 A in genome downstream of last aligned base) 304/305
(99 %)
1 diff
(99.7 %id)
DN918148   .b 5528 to 6117 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
BP396962 pancreatic islet .b 5530 to 5955 1 to 426     Submitted on the opposite strand 426/426
(100 %)
2 diff
(99.6 %id)
C14333   .b 5537 to 5980 441 to 1       441/444
(99 %)
4 diff
(99.1 %id)
BY800356 eye .b 5549 to 5981 1 to 443       443/443
(100 %)
9 diff
(98.0 %id)
DN918149   .b 5553 to 6130 576 to 1   tiling clone,   576/576
(100 %)
4 diff
(99.4 %id)
BE503954 carcinoid, lung .b 5553 to 5997 1 to 445     Submitted on the opposite strand 445/445
(100 %)
5 diff
(98.9 %id)
C14239   .b 5566 to 5985 419 to 1       419/419
(100 %)
5 diff
(98.9 %id)
AI423823 pooled .b 5585 to 5813 229 to 1       229/229
(100 %)
0 diff
(100 %id)
D81228 brain .b 5653 to 5858 1 to 205       205/205
(100 %)
3 diff
(98.6 %id)
AI762840 B-cell, chronic lymphotic leukemia .b 5671 to 6103 436 to 3       434/436
(99 %)
0 diff
(100 %id)
AI244194 Kidney .b 5674 to 6128 455 to 1       455/455
(100 %)
0 diff
(100 %id)
AA825325 carcinoid, lung .b 5684 to 6127 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
BG678375 skin, squamous cell carcinoma .b 5700 to 6437 1 to 758   tiling clone,   758/765
(99 %)
30 diff
(96.1 %id)
AA977013 carcinoid, lung .b 5726 to 6127 402 to 1       402/402
(100 %)
0 diff
(100 %id)
BP394443 pancreatic islet .b 5746 to 6128 1 to 384     Submitted on the opposite strand 384/384
(100 %)
1 diff
(99.8 %id)
AA492324 Prostate .b 5746 to 6008 277 to 15       263/277
(94 %)
0 diff
(100 %id)
AA878217 carcinoid, lung .b 5758 to 6127 370 to 1       370/370
(100 %)
0 diff
(100 %id)
D80151 brain .b 5771 to 5985 214 to 1       214/214
(100 %)
1 diff
(99.6 %id)
AA470961   .b 5777 to 5981 205 to 1       205/205
(100 %)
3 diff
(98.6 %id)
H21782 breast .b 5793 to 5960 168 to 1       168/179
(93 %)
1 diff
(99.5 %id)
AU185032 skin .b 5895 to 6154 259 to 1   tiling clone,   259/259
(100 %)
2 diff
(99.3 %id)
FN058095 breast carcinoma .b 6003 to 6109 108 to 1     Submitted on the opposite strand 108/116
(93 %)
5 diff
(95.7 %id)
GD137796   .b 6038 to 6141 1 to 106       106/108
(98 %)
3 diff
(97.3 %id)
BF897212 marrow .b 6252 to 6531 302 to 24   tiling clone, Submitted on the opposite strand 279/303
(92 %)
0 diff
(100 %id)
D79487 aorta .b 6279 to 6737 1 to 456       456/456
(100 %)
7 diff
(98.5 %id)
BF172365 blood .b 6290 to 6508 36 to 254       219/254
(86 %)
6 diff
(97.7 %id)
FN138149 breast carcinoma .b 6301 to 6405 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
AW205453   .b 6352 to 7004 665 to 14   tiling clone,   652/665
(98 %)
0 diff
(100 %id)
BF115745 carcinoid, lung .b 6436 to 7017 596 to 13   tiling clone, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 584/584
(100 %)
2 diff
(99.7 %id)
AW082494 esophagus, squamous cell carcinoma .b 6476 to 6706 236 to 6       231/236
(97 %)
0 diff
(100 %id)
BF848986 lung_normal .b 6506 to 7003 1 to 500       500/500
(100 %)
15 diff
(97.0 %id)
AI699465 pooled .b 6545 to 7000 456 to 1       456/456
(100 %)
0 diff
(100 %id)
AI022180 liver and spleen .b 6559 to 7002 443 to 1       443/443
(100 %)
3 diff
(99.4 %id)
AW592230 pooled .b 6578 to 6998 419 to 1       419/419
(100 %)
1 diff
(99.8 %id)
AA704996 liver and spleen .b 6584 to 7002 418 to 1       418/418
(100 %)
3 diff
(99.3 %id)
W92775 liver and spleen .b 6596 to 7002 412 to 1       412/413
(99 %)
10 diff
(97.6 %id)
AI686506 Prostate .b 6638 to 7000 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
AI218589 pooled .b 6683 to 7000 318 to 1       318/318
(100 %)
0 diff
(100 %id)
FN141681 breast carcinoma .b 6821 to 6910 1 to 87       87/88
(98 %)
5 diff
(94.4 %id)
AA830882 germinal center B cell .b 6868 to 6997 173 to 44   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 130/130
(100 %)
0 diff
(100 %id)
GD144178   .b 6891 to 6997 1 to 105   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 105/105
(100 %)
1 diff
(99.1 %id)
DA227296 brain .c -845 to -297 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BQ189392 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c -362 to 153 17 to 532       516/532
(96 %)
6 diff
(98.9 %id)
R00028 liver and spleen .c -357 to -76 280 to 1       280/286
(97 %)
5 diff
(98.3 %id)
DA778986 brain .c -333 to 229 2 to 564   capped   563/572
(98 %)
2 diff
(99.7 %id)
GD149190   .c -326 to -239 12 to 100       89/110
(80 %)
5 diff
(95.5 %id)
TI_151731674   .c -316 to 251 615 to 48       568/1029
(55 %)
0 diff
(100 %id)
DA489746 brain .c -260 to 81 2 to 343   capped   342/342
(100 %)
0 diff
(100 %id)
DB268044 uterus .c -260 to 309 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BC068481 Brain, hippocampus .c 1 to 2596 1 to 2594 P376H V389H T390S S392Q K393V ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 2594/2594
(100 %)
6 diff
(99.8 %id)
NM_032682.4   .c 1 to 6222 1 to 6222 exact RefSeq,   6222/6222
(100 %)
0 diff
(100 %id)
BE206755 lung, small cell carcinoma .c 52 to 208 1 to 157   available from MGC,   157/157
(100 %)
0 diff
(100 %id)
BE266586 lung, small cell carcinoma .c 70 to 704 1 to 633   available from MGC,   633/633
(100 %)
3 diff
(99.6 %id)
BE263769 lung, small cell carcinoma .c 70 to 359 1 to 289   available from MGC,   289/515
(56 %)
1 diff
(99.9 %id)
DB267392 uterus .c 165 to 360 2 to 197   capped   196/217
(90 %)
1 diff
(99.6 %id)
AF146696 testis .c 443 to 2596 179 to 2333 exact AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 2155/2333
(92 %)
6 diff
(99.8 %id)
CD634224   .c 443 to 660 202 to 418       217/418
(51 %)
6 diff
(98.6 %id)
AW408101 lymph .c 643 to 1152 1 to 510       510/510
(100 %)
5 diff
(99.1 %id)
TI_154147463   .c 649 to 1242 77 to 672       596/872
(68 %)
9 diff
(99.0 %id)
DQ845346   .c 699 to 2897 820 to 3018   tiling clone,   2199/3018
(72 %)
6 diff
(99.9 %id)
BF810761 colon_ins .c 704 to 929 16 to 242       227/250
(90 %)
9 diff
(96.4 %id)
BF810764 colon_ins .c 704 to 882 180 to 1     Submitted on the opposite strand 180/200
(90 %)
5 diff
(97.5 %id)
BF932630 nervous_tumor .c 706 to 1081 13 to 386       374/386
(96 %)
6 diff
(98.5 %id)
CD522200 pooled .c 788 to 1397 1 to 622       622/807
(77 %)
19 diff
(97.7 %id)
BX385176   .c 807 to 1395 17 to 606       590/711
(82 %)
34 diff
(95.3 %id)
CR995210 T-Lymphocytes .c 807 to 1218 50 to 462       413/462
(89 %)
5 diff
(99.0 %id)
BG431328 Kidney .c 823 to 1500 1 to 678       678/820
(82 %)
1 diff
(99.9 %id)
CD557168 testis .c 845 to 1587 1 to 744       744/938
(79 %)
14 diff
(98.6 %id)
AV746672 Pituitary .c 859 to 1171 1 to 304       304/319
(95 %)
14 diff
(95.7 %id)
BF837279 head_neck .c 864 to 1174 1 to 314       314/314
(100 %)
3 diff
(99.1 %id)
BG001173 placenta_normal .c 876 to 1308 1 to 433       436/433
(100 %)
8 diff
(98.2 %id)
AW176062 breast .c 1001 to 1500 522 to 19       505/522
(96 %)
5 diff
(99.1 %id)
BF855213 prostate_normal .c 1002 to 1451 447 to 1     Submitted on the opposite strand 447/449
(99 %)
8 diff
(98.3 %id)
BQ346149 nervous_tumor .c 1144 to 1381 234 to 3       232/235
(98 %)
7 diff
(97.1 %id)
BI036717 nervous_tumor .c 1188 to 1477 307 to 18       290/307
(94 %)
0 diff
(100 %id)
AB052767   .c 1264 to 2596 1 to 1333   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 1333/1333
(100 %)
0 diff
(100 %id)
T93012.
matches multiple genes
lung .c 1264 to 1500 1 to 238     also hits gene dergler 238/391
(60 %)
5 diff
(98.8 %id)
Z44402 brain, total brain .c 1285 to 1651 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
T32726 heart .c 1298 to 1500 1 to 205       205/214
(95 %)
5 diff
(97.7 %id)
AA219507   .c 1472 to 1831 1 to 361       361/361
(100 %)
1 diff
(99.8 %id)
FN051301 breast carcinoma .c 1495 to 1563 9 to 76       68/77
(88 %)
5 diff
(93.6 %id)
FN166686 breast carcinoma .c 1503 to 1588 1 to 85       85/86
(98 %)
2 diff
(97.7 %id)
CR986677 T-Lymphocytes .c 1536 to 2410 1 to 873       873/873
(100 %)
1 diff
(99.9 %id)
CN336558 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1578 to 2288 1 to 711       711/711
(100 %)
2 diff
(99.8 %id)
FN064405 breast carcinoma .c 1599 to 1664 1 to 64       64/77
(83 %)
4 diff
(94.9 %id)
CF138736 lymph .c 1600 to 2131 1 to 532       532/535
(99 %)
6 diff
(98.9 %id)
TI_154168773   .c 1607 to 2182 93 to 668       576/788
(73 %)
10 diff
(98.8 %id)
BF837286 head_neck .c 1636 to 1799 183 to 24     Submitted on the opposite strand 160/183
(87 %)
0 diff
(100 %id)
AA290998 germinal center B cell .c 1657 to 2147 1 to 489       489/489
(100 %)
2 diff
(99.6 %id)
FN144999 breast carcinoma .c 1731 to 1843 108 to 1     Submitted on the opposite strand 108/108
(100 %)
5 diff
(95.4 %id)
TI_154160278   .c 1767 to 2312 632 to 87     Submitted on the opposite strand 546/551
(99 %)
0 diff
(100 %id)
FN165677 breast carcinoma .c 1797 to 1874 1 to 77       77/78
(98 %)
4 diff
(94.9 %id)
AW504170 lymph .c 1804 to 2312 516 to 8     Submitted on the opposite strand 509/516
(98 %)
0 diff
(100 %id)
CX757619 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 1865 to 2589 1 to 726     Submitted on the opposite strand 726/729
(99 %)
32 diff
(95.7 %id)
CU457133 epidermis .c 1885 to 2514 632 to 3     Submitted on the opposite strand 630/641
(98 %)
8 diff
(98.8 %id)
AW009586 colon .c 1890 to 2604 716 to 1       716/719
(99 %)
11 diff
(98.5 %id)
TI_149311710   .c 1905 to 2594 773 to 85   AAA Possibly primed on the genome, locally A rich (18/22 A in genome downstream of last aligned base) 689/978
(70 %)
2 diff
(99.8 %id)
CB851510 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1905 to 2615 707 to 1       707/713
(99 %)
5 diff
(99.3 %id)
AI949471 2 pooled tumors (clear cell type), Kidney .c 1919 to 2601 682 to 1       682/682
(100 %)
10 diff
(98.6 %id)
DB537997 hippocampus .c 1923 to 2603 1 to 679     Submitted on the opposite strand 593/679
(87 %)
11 diff
(98.4 %id)
CA439591 lung, Lung Focal Fibrosis .c 1932 to 2615 683 to 1       683/683
(100 %)
3 diff
(99.6 %id)
BE246786 leukopheresis .c 1939 to 2216 1 to 278       278/278
(100 %)
2 diff
(99.3 %id)
BF002460 colon, colon tumor, RER+ .c 1952 to 2595 645 to 1       645/651
(99 %)
8 diff
(98.8 %id)
DB528276 hippocampus .c 1953 to 2602 1 to 650     Submitted on the opposite strand 650/650
(100 %)
1 diff
(99.9 %id)
BX352616   .c 1954 to 2586 641 to 1       641/641
(100 %)
24 diff
(96.3 %id)
BF901598 marrow .c 1955 to 2431 67 to 544       478/544
(87 %)
7 diff
(98.8 %id)
AI972809 Prostate .c 1958 to 2517 561 to 1       561/561
(100 %)
15 diff
(97.4 %id)
AI597674 Prostate .c 1982 to 2598 617 to 1       617/617
(100 %)
23 diff
(96.3 %id)
TI_153988497   .c 1985 to 2617 703 to 72       632/703
(89 %)
4 diff
(99.5 %id)
DB305263 brain .c 2053 to 2595 543 to 1       543/543
(100 %)
0 diff
(100 %id)
DB315335 brain .c 2055 to 2603 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
TI_153989140   .c 2055 to 2596 650 to 109   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 542/610
(88 %)
8 diff
(98.7 %id)
AW204756   .c 2057 to 2596 555 to 18   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 538/538
(100 %)
2 diff
(99.7 %id)
BE672268 Prostate .c 2057 to 2598 542 to 1       542/542
(100 %)
4 diff
(99.3 %id)
AA284388 germinal center B cell .c 2060 to 2355 1 to 295   fully sequenced,   295/295
(100 %)
1 diff
(99.7 %id)
BI677222 insulinoma, Pancreas .c 2068 to 2501 1 to 434       434/434
(100 %)
7 diff
(98.4 %id)
CK903199 insulinoma, Pancreas .c 2068 to 2596 1 to 529   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 529/529
(100 %)
4 diff
(99.3 %id)
BM511307 insulinoma, Pancreas .c 2068 to 2596 1 to 529   fully sequenced, Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 529/529
(100 %)
4 diff
(99.3 %id)
BF948207 nervous_normal .c 2079 to 2372 294 to 1       294/294
(100 %)
4 diff
(98.7 %id)
BQ018719 lung, Metastatic Chondrosarcoma .c 2079 to 2615 536 to 1       536/543
(98 %)
2 diff
(99.7 %id)
CB115228 Liver .c 2083 to 2596 533 to 20   AAA Submitted on the opposite strand 514/514
(100 %)
4 diff
(99.3 %id)
AF151049 umbilical cord blood .c 2107 to 2595 1 to 487   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 487/488
(99 %)
3 diff
(99.4 %id)
AV739508 cord Blood .c 2119 to 2565 20 to 450       431/450
(95 %)
20 diff
(95.6 %id)
BI677221 insulinoma, Pancreas .c 2122 to 2575 454 to 1       454/454
(100 %)
2 diff
(99.6 %id)
AI471479 follicular lymphoma, lymph node .c 2130 to 2603 474 to 1       474/474
(100 %)
0 diff
(100 %id)
DB542024 hippocampus .c 2138 to 2603 1 to 466     Submitted on the opposite strand 466/466
(100 %)
0 diff
(100 %id)
AW069364 bone marrow stroma .c 2140 to 2596 479 to 23   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 457/457
(100 %)
0 diff
(100 %id)
AI439598 B-cell, chronic lymphotic leukemia .c 2140 to 2595 457 to 2       456/457
(99 %)
2 diff
(99.6 %id)
AA454997 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2141 to 2577 1 to 436   fully sequenced,   436/436
(100 %)
1 diff
(99.8 %id)
CR736342   .c 2142 to 2596 1 to 455   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 455/455
(100 %)
0 diff
(100 %id)
BF334254 colon .c 2143 to 2617 1 to 472       472/478
(98 %)
16 diff
(96.7 %id)
BF334252 colon .c 2147 to 2628 1 to 482       482/489
(98 %)
20 diff
(96.0 %id)
DB542717 hippocampus .c 2150 to 2602 1 to 453     Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
AW235580 Kidney .c 2156 to 2603 448 to 1       448/448
(100 %)
1 diff
(99.8 %id)
AI016202   .c 2164 to 2600 434 to 1       434/434
(100 %)
2 diff
(99.6 %id)
AI144309 B-cell, chronic lymphotic leukemia .c 2165 to 2597 433 to 1       433/433
(100 %)
0 diff
(100 %id)
T92945.
matches multiple genes
lung .c 2172 to 2598 430 to 1     also hits gene dergler 430/476
(90 %)
7 diff
(98.6 %id)
AA290613 germinal center B cell .c 2178 to 2596 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AA977972 Kidney, kidney tumor .c 2181 to 2604 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AA191362   .c 2187 to 2604 418 to 1       418/422
(99 %)
1 diff
(99.8 %id)
BE672028 pooled germ cell tumors .c 2198 to 2596 399 to 1       399/399
(100 %)
0 diff
(100 %id)
CR457164   .c 2201 to 2556 1 to 356       356/360
(98 %)
1 diff
(99.8 %id)
T32725 heart .c 2214 to 2596 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
AA620867   .c 2216 to 2596 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AI678530 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 2225 to 2603 379 to 1       379/379
(100 %)
1 diff
(99.8 %id)
AW205271   .c 2234 to 2596 380 to 18   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 363/363
(100 %)
1 diff
(99.8 %id)
AI129235 uterus .c 2238 to 2596 359 to 1       359/359
(100 %)
0 diff
(100 %id)
AA657480   .c 2254 to 2596 353 to 11   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 343/343
(100 %)
0 diff
(100 %id)
AA640509   .c 2254 to 2596 353 to 11   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 343/343
(100 %)
0 diff
(100 %id)
AA805162 germinal center B cell .c 2254 to 2547 294 to 1       294/294
(100 %)
0 diff
(100 %id)
AW887598 ovary .c 2257 to 2725 471 to 2       470/471
(99 %)
10 diff
(97.9 %id)
CR979862 T-Lymphocytes .c 2258 to 2596 1 to 339   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 339/339
(100 %)
0 diff
(100 %id)
AA635267   .c 2284 to 2596 323 to 11   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 313/313
(100 %)
0 diff
(100 %id)
Z40334 brain, total brain .c 2300 to 2596 297 to 1       297/297
(100 %)
0 diff
(100 %id)
BF350259 head_neck .c 2311 to 2666 25 to 381       357/384
(92 %)
24 diff
(93.8 %id)
AA292717 germinal center B cell .c 2325 to 2603 279 to 1   fully sequenced,   279/279
(100 %)
0 diff
(100 %id)
BQ333947 marrow .c 2327 to 2513 197 to 10       188/203
(92 %)
4 diff
(98.1 %id)
BQ354149 head_neck .c 2328 to 2771 472 to 17       456/472
(96 %)
2 diff
(99.6 %id)
BF360360 marrow .c 2330 to 2924 8 to 602       595/602
(98 %)
16 diff
(97.4 %id)
AA219298   .c 2353 to 2595 243 to 1       243/243
(100 %)
3 diff
(98.8 %id)
AI824996 pooled germ cell tumors .c 2353 to 2596 246 to 1       246/246
(100 %)
4 diff
(98.4 %id)
CK820351 insulinoma, Pancreas .c 2357 to 2596 250 to 11   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 240/240
(100 %)
0 diff
(100 %id)
FN050379 breast carcinoma .c 2359 to 2412 54 to 1     Submitted on the opposite strand 54/55
(98 %)
1 diff
(98.2 %id)
BM510475 insulinoma, Pancreas .c 2384 to 2596 223 to 11   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 213/213
(100 %)
0 diff
(100 %id)
AA454998 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2385 to 2596 212 to 1   fully sequenced,   212/212
(100 %)
0 diff
(100 %id)
BG213974   .c 2412 to 2616 1 to 205       205/205
(100 %)
4 diff
(98.1 %id)
AI336745 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 2437 to 2603 167 to 1       167/167
(100 %)
0 diff
(100 %id)
BG998789 head_neck .c 2465 to 2975 1 to 509       509/512
(99 %)
33 diff
(93.6 %id)
FN096576 breast carcinoma .c 2465 to 2569 1 to 101       101/101
(100 %)
6 diff
(94.1 %id)
FN153623 breast carcinoma .c 2511 to 2596 1 to 86       86/86
(100 %)
0 diff
(100 %id)
BQ358047 head_neck .c 2516 to 2883 384 to 16       369/388
(95 %)
0 diff
(100 %id)
BQ371775 prostate_normal .c 2563 to 2893 336 to 1       336/356
(94 %)
0 diff
(100 %id)
BE150705 head_neck .c 2571 to 2820 252 to 1     Submitted on the opposite strand 252/252
(100 %)
8 diff
(96.9 %id)
AW891854 nervous_tumor .c 2589 to 2916 334 to 9       326/339
(96 %)
0 diff
(100 %id)
CN484181 eye .c 2688 to 3294 1 to 606   tiling clone,   606/606
(100 %)
5 diff
(99.2 %id)
DA884107   .c 2743 to 3251 2 to 507   capped   506/506
(100 %)
4 diff
(99.3 %id)
CN485020 eye .c 2969 to 3507 1 to 544       544/545
(99 %)
7 diff
(98.8 %id)
AF150208 umbilical cord blood .c 3041 to 3805 749 to 1   tiling clone, AAA   749/749
(100 %)
44 diff
(94.2 %id)
AI610412 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3045 to 3315 1 to 270     Submitted on the opposite strand 270/270
(100 %)
1 diff
(99.7 %id)
AW295861   .c 3053 to 3314 1 to 264     Submitted on the opposite strand 264/268
(98 %)
11 diff
(95.9 %id)
AI760595 colon, colon tumor, RER+ .c 3066 to 3471 1 to 406     Submitted on the opposite strand 406/406
(100 %)
3 diff
(99.3 %id)
BF350327 head_neck .c 3157 to 3545 413 to 24   AAA   390/446
(87 %)
0 diff
(100 %id)
AW292592   .c 3159 to 3611 1 to 454     Submitted on the opposite strand 454/454
(100 %)
6 diff
(98.7 %id)
BU674658 lung, Primary Lung Epithelial Cells .c 3159 to 3306 1 to 148     Submitted on the opposite strand 148/197
(75 %)
1 diff
(99.5 %id)
AI458457 carcinoid, lung .c 3173 to 3573 1 to 403   tiling clone, Submitted on the opposite strand 403/432
(93 %)
9 diff
(98.0 %id)
AK026898 colon .c 3201 to 5033 1 to 1834   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (41/41 A in genome downstream of last aligned base) 1834/1834
(100 %)
8 diff
(99.6 %id)
BM150967 leukopheresis .c 3226 to 3670 461 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 445/446
(99 %)
4 diff
(99.2 %id)
FN087497 breast carcinoma .c 3292 to 3390 103 to 7     Submitted on the opposite strand 97/103
(94 %)
0 diff
(100 %id)
AW970752   .c 3324 to 3670 347 to 1     Submitted on the opposite strand 347/488
(71 %)
1 diff
(99.8 %id)
AV735441 cord Blood .c 3343 to 3842 501 to 20     Submitted on the opposite strand 482/589
(81 %)
0 diff
(100 %id)
AA527592 colon .c 3357 to 3671 315 to 1       315/315
(100 %)
1 diff
(99.7 %id)
BE672053 pooled germ cell tumors .c 3420 to 3671 252 to 1       252/252
(100 %)
0 diff
(100 %id)
BF222809 pooled germ cell tumors .c 3420 to 3671 252 to 1       252/252
(100 %)
0 diff
(100 %id)
CB962534 Blood vessels - aorta, basilar and artery .c 3437 to 4070 1 to 640       640/818
(78 %)
19 diff
(97.7 %id)
BX506039   .c 3470 to 3972 1 to 503   tiling clone,   503/503
(100 %)
1 diff
(99.9 %id)
CD638765 pooled .c 3543 to 4194 1 to 652       652/655
(99 %)
10 diff
(98.5 %id)
DB477585 hippocampus .c 3566 to 4057 1 to 493       493/493
(100 %)
1 diff
(99.8 %id)
DB481482 hippocampus .c 3566 to 4042 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
BQ000723 lung, Metastatic Chondrosarcoma .c 3574 to 4280 1 to 706     Submitted on the opposite strand 706/706
(100 %)
8 diff
(98.9 %id)
BF058498 fibrotheoma, ovary .c 3578 to 3858 1 to 280     Submitted on the opposite strand 280/280
(100 %)
2 diff
(99.3 %id)
BE218961 carcinoid, lung .c 3585 to 4016 1 to 432     Submitted on the opposite strand 432/432
(100 %)
2 diff
(99.6 %id)
AA005208 liver and spleen .c 3589 to 3865 1 to 276     Submitted on the opposite strand 276/280
(98 %)
7 diff
(97.5 %id)
AA767790 germinal center B cell .c 3591 to 3963 1 to 375     Submitted on the opposite strand 375/375
(100 %)
6 diff
(98.4 %id)
BE219290 carcinoid, lung .c 3597 to 4071 1 to 475     Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
AA946679 germinal center B cell .c 3601 to 4040 1 to 441     Submitted on the opposite strand 441/441
(100 %)
4 diff
(99.1 %id)
AA721375 germinal center B cell .c 3604 to 3963 1 to 361     Submitted on the opposite strand 361/361
(100 %)
1 diff
(99.8 %id)
BX645391   .c 3653 to 4119 1 to 467       467/467
(100 %)
2 diff
(99.6 %id)
AA911245 carcinoid, lung .c 3653 to 4171 1 to 515     Submitted on the opposite strand 515/560
(91 %)
8 diff
(98.6 %id)
BM705766 eye, lens .c 3671 to 4145 1 to 475       475/475
(100 %)
0 diff
(100 %id)
AW376287 colon .c 3673 to 4122 445 to 2       444/448
(99 %)
0 diff
(100 %id)
AV708241 adrenal gland .c 3683 to 4057 1 to 375       375/375
(100 %)
5 diff
(98.7 %id)
F13495 brain, total brain .c 3707 to 4089 1 to 382       382/382
(100 %)
1 diff
(99.8 %id)
T75259 whole brain .c 3707 to 4257 1 to 552       552/552
(100 %)
18 diff
(96.8 %id)
BP392166 pancreatic islet .c 3712 to 4210 501 to 1       501/501
(100 %)
2 diff
(99.7 %id)
T93988 lung .c 3718 to 4064 1 to 356       356/359
(99 %)
15 diff
(95.9 %id)
BF687706 brain, glioblastoma .c 3720 to 4383 1 to 664       664/797
(83 %)
45 diff
(94.4 %id)
CD109152 brain, Pituitary .c 3734 to 4338 1 to 613       613/991
(61 %)
16 diff
(98.4 %id)
BF245140 brain, glioblastoma .c 3735 to 4420 1 to 667       667/864
(77 %)
29 diff
(96.7 %id)
BG529890 embryonal carcinoma, testis .c 3771 to 4435 1 to 676       676/864
(78 %)
61 diff
(93.0 %id)
BG536518 lung .c 3787 to 4579 1 to 798       798/888
(89 %)
60 diff
(93.3 %id)
BU198179   .c 3839 to 4404 1 to 566       566/566
(100 %)
24 diff
(95.8 %id)
FN071438 breast carcinoma .c 3839 to 3922 1 to 80       80/82
(97 %)
5 diff
(94.0 %id)
BG566903 Liver .c 3841 to 4678 1 to 820       820/823
(99 %)
28 diff
(96.6 %id)
BF944770 nervous_normal .c 3855 to 4246 19 to 405       387/406
(95 %)
7 diff
(98.3 %id)
BG502419 embryonal carcinoma, testis .c 3855 to 4602 1 to 744       744/787
(94 %)
24 diff
(97.0 %id)
FN088273 breast carcinoma .c 3873 to 3961 1 to 91       91/92
(98 %)
4 diff
(95.7 %id)
BE973647 Prostate .c 3897 to 4578 1 to 666       666/828
(80 %)
27 diff
(96.8 %id)
BG545762 lung .c 3897 to 4598 1 to 706       706/706
(100 %)
6 diff
(99.2 %id)
AI799114 pooled .c 3898 to 4246 349 to 1       349/349
(100 %)
2 diff
(99.5 %id)
BX112714 heart .c 3903 to 4660 1 to 760       760/760
(100 %)
5 diff
(99.4 %id)
AA047606 heart .c 3903 to 4270 1 to 373       373/373
(100 %)
9 diff
(97.6 %id)
BE865882 bladder, carcinoma, cell line .c 3913 to 4615 21 to 710       690/801
(86 %)
33 diff
(95.9 %id)
BU620092 Cell Line, Chondrosarcoma .c 3932 to 4642 729 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 711/711
(100 %)
1 diff
(99.9 %id)
BM930906 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3964 to 4473 1 to 510   fully sequenced,   510/510
(100 %)
0 diff
(100 %id)
BF211389 bone marrow, from chronic myelogenous leukemia .c 4017 to 4632 1 to 611       611/611
(100 %)
9 diff
(98.6 %id)
BF576713 muscle (skeletal) .c 4017 to 4664 1 to 635       635/839
(75 %)
23 diff
(97.3 %id)
BQ310432 breast .c 4036 to 4641 608 to 5       604/608
(99 %)
0 diff
(100 %id)
BF680187 Prostate .c 4036 to 4650 1 to 609       609/799
(76 %)
8 diff
(99.0 %id)
BF699633 brain, primitive neuroectoderm .c 4051 to 4722 1 to 660       660/864
(76 %)
16 diff
(98.2 %id)
FN073346 breast carcinoma .c 4053 to 4160 1 to 107       107/107
(100 %)
1 diff
(99.1 %id)
DA570804 whole embryo, mainly head .c 4058 to 4923 2 to 859   capped   858/859
(99 %)
15 diff
(98.3 %id)
BU941828 mixed (pool of 40 RNAs) .c 4084 to 4467 1 to 384       384/406
(94 %)
2 diff
(99.6 %id)
N87996   .c 4127 to 4431 1 to 303       303/304
(99 %)
3 diff
(99.1 %id)
DN912701   .c 4142 to 4228 1 to 87       87/87
(100 %)
0 diff
(100 %id)
BP398080 pancreatic islet .c 4143 to 4642 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
AA005207 liver and spleen .c 4311 to 4591 283 to 1     Submitted on the opposite strand 283/283
(100 %)
3 diff
(99.0 %id)
BM684422 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4443 to 5051 609 to 1   tiling clone, fully sequenced,   609/609
(100 %)
2 diff
(99.7 %id)
DB330404   .c 4495 to 5033 541 to 1       541/541
(100 %)
2 diff
(99.7 %id)
BU734968 eye, lens .c 4613 to 5051 439 to 1       439/439
(100 %)
1 diff
(99.8 %id)
AA057788 heart .c 4674 to 5033 362 to 1       362/362
(100 %)
3 diff
(99.2 %id)
F10488 brain, total brain .c 4722 to 5033 311 to 1       311/311
(100 %)
1 diff
(99.7 %id)
T93311 lung .c 4726 to 5028 312 to 6       307/312
(98 %)
0 diff
(100 %id)
DB357606 whole embryo, mainly head .c 5378 to 5923 539 to 1   tiling clone,   539/570
(94 %)
8 diff
(98.6 %id)
AK122710 tongue, tumor tissue .d 1 to 2702 2 to 2703 L138P tiling clone, available from FLJ,   2703/2703
(100 %)
2 diff
(100.0 %id)
DA433509 tongue, tumor tissue .d 1 to 461 2 to 462   capped   461/703
(65 %)
0 diff
(100 %id)
DA881053   .d 32 to 495 2 to 467   capped   466/466
(100 %)
3 diff
(99.4 %id)
DA439402 tongue, tumor tissue .d 56 to 461 2 to 408   capped   407/567
(71 %)
1 diff
(99.9 %id)
DN997529 breast cancer, Mammary gland (cancer tissue) .d 136 to 878 1 to 742       742/742
(100 %)
5 diff
(99.4 %id)
BX426968 fetal liver, Liver .d 618 to 1138 1 to 519   tiling clone,   519/519
(100 %)
4 diff
(99.3 %id)
AF275309   .d 1263 to 2700 9 to 1446       1438/1446
(99 %)
6 diff
(99.6 %id)
AW961700   .d 1401 to 2019 1 to 620       620/620
(100 %)
4 diff
(99.4 %id)
BM718511 eye, fetal eye .d 1551 to 2097 1 to 547   fully sequenced,   547/547
(100 %)
0 diff
(100 %id)
W89006 liver and spleen .d 1610 to 2139 1 to 535       535/539
(99 %)
6 diff
(98.9 %id)
BX405653 fetal liver, Liver .d 1692 to 2684 1000 to 4       997/1000
(99 %)
9 diff
(99.1 %id)
BQ001938 lung, Metastatic Chondrosarcoma .d 1908 to 2714 802 to 1   tiling clone,   802/802
(100 %)
6 diff
(99.3 %id)
FN136362 breast carcinoma .d 1914 to 2015 98 to 1     Submitted on the opposite strand 98/98
(100 %)
4 diff
(96.0 %id)
EH343294   .d 1923 to 1995 1 to 73       73/73
(100 %)
0 diff
(100 %id)
BM683556 eye, fetal eye .d 2067 to 2714 645 to 1   fully sequenced,   645/645
(100 %)
3 diff
(99.6 %id)
DB313100 tongue, tumor tissue .d 2152 to 2702 551 to 1       551/551
(100 %)
0 diff
(100 %id)
W89007 liver and spleen .d 2192 to 2695 508 to 1       508/512
(99 %)
8 diff
(98.5 %id)
DA454166 tongue, tumor tissue .e 1 to 553 2 to 555   tiling clone, capped   554/554
(100 %)
2 diff
(99.7 %id)
AK092383   .e 525 to 2438 83 to 1996 exact tiling clone, available from FLJ,   1914/1996
(95 %)
7 diff
(99.7 %id)
AX747510   .e 525 to 2438 83 to 1996 exact     1914/1996
(95 %)
7 diff
(99.7 %id)
DA813053   .e 525 to 1214 83 to 772   capped   690/771
(89 %)
6 diff
(99.3 %id)
DB327585   .e 1876 to 2438 563 to 1       563/563
(100 %)
0 diff
(100 %id)
AF146698 testis .f 1 to 1898 55 to 1688 Q40L Q44W E45K F46E Y47V ... tiling clone, AAA Suspected internal deletion, possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 1634/1635
(99 %)
5 diff
(99.7 %id)
TI_44346103   .g -9 to 695 81 to 786       706/898
(78 %)
15 diff
(98.4 %id)
BG705687 brain, hypothalamus .g 1 to 448 7 to 454       454/454
(100 %)
3 diff
(99.4 %id)
BG715185 brain, hypothalamus .g 1 to 730 7 to 735   tiling clone,   735/735
(100 %)
4 diff
(99.5 %id)
BI669221 brain, hypothalamus .g 1 to 695 7 to 702       702/814
(86 %)
12 diff
(98.6 %id)
DB727791 hippocampus .g 1 to 651 6 to 656       656/656
(100 %)
3 diff
(99.6 %id)
DB473255 hippocampus .g 1 to 475 6 to 479       479/479
(100 %)
3 diff
(99.4 %id)
DB473933 hippocampus .g 1 to 484 6 to 489       489/489
(100 %)
2 diff
(99.6 %id)
DA684425   .g 1 to 392 6 to 397   capped   396/396
(100 %)
0 diff
(100 %id)
AK074569 whole embryo, mainly head .g 1 to 1886 3 to 1889 L314P T315D P316S V317R T318H ... tiling clone, available from FLJ,   1889/1889
(100 %)
2 diff
(99.9 %id)
DA570692 whole embryo, mainly head .g 1 to 592 3 to 594   capped   593/593
(100 %)
6 diff
(99.0 %id)
DA673311   .g 1 to 383 2 to 384   capped   383/383
(100 %)
1 diff
(99.8 %id)
BQ219131 brain .g 4 to 694 14 to 710       697/972
(71 %)
32 diff
(96.8 %id)
BI907244 leukocyte .g 24 to 843 5 to 830       826/1060
(77 %)
11 diff
(99.0 %id)
TI_57232658   .g 29 to 843 36 to 857       822/1052
(78 %)
10 diff
(99.1 %id)
DB357481 whole embryo, mainly head .g 1321 to 1886 577 to 1       577/578
(99 %)
24 diff
(95.9 %id)
BP342571 stomach mucosa .h 1 to 577 1 to 579   tiling clone,   579/579
(100 %)
1 diff
(99.9 %id)
DB108382 thymus .h 8 to 548 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
AK027264 whole embryo, mainly head .h 11 to 1983 1 to 1973 Q73R L105V tiling clone, available from FLJ,   1973/1973
(100 %)
2 diff
(99.9 %id)
DA976892 synovial membrane tissue from rheumatioidarthritis .h 11 to 539 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA568064 whole embryo, mainly head .h 12 to 775 2 to 768   capped   767/781
(98 %)
11 diff
(98.6 %id)
BM824115 Ascites, stomach .h 13 to 643 1 to 631   tiling clone,   631/631
(100 %)
0 diff
(100 %id)
DA813893   .h 22 to 579 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BI912350 leukocyte .h 41 to 780 18 to 765       748/784
(95 %)
19 diff
(97.6 %id)
TI_57235701   .h 41 to 780 18 to 765       748/784
(95 %)
19 diff
(97.6 %id)
AA465453 germinal center B cell .h 44 to 228 1 to 184       184/184
(100 %)
1 diff
(99.5 %id)
DB354526 whole embryo, mainly head .h 1558 to 1983 439 to 1       439/466
(94 %)
33 diff
(93.0 %id)
AA465379 germinal center B cell .h 1594 to 1976 382 to 1       382/382
(100 %)
3 diff
(99.3 %id)
AF146697 circulating blood .i 1 to 1780 40 to 1823 exact tiling clone,   1784/1827
(97 %)
12 diff
(99.4 %id)
BG776635 lung, mucoepidermoid carcinoma .i 28 to 696 1 to 668       668/668
(100 %)
4 diff
(99.5 %id)
DA845135 placenta .j 1 to 298 2 to 300   tiling clone, capped   299/573
(52 %)
1 diff
(99.9 %id)
BC054505 Eye, retinoblastoma .j 161 to 5833 1 to 5672 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 5672/5672
(100 %)
9 diff
(99.9 %id)
BM466425 eye, retinoblastoma .j 161 to 1091 1 to 934   available from MGC,   934/1018
(91 %)
8 diff
(99.3 %id)
BE502866 carcinoid, lung .j 5249 to 5843 595 to 1       595/595
(100 %)
6 diff
(99.0 %id)
AA971621 carcinoid, lung .j 5370 to 5843 473 to 1   tiling clone,   473/473
(100 %)
2 diff
(99.6 %id)
BI823498 pooled brain, lung, testis .k 1 to 799 1 to 794   tiling clone,   794/852
(93 %)
6 diff
(99.3 %id)
TI_57202677   .k 1 to 861 69 to 920   tiling clone,   852/920
(92 %)
19 diff
(98.0 %id)
FN052713 breast carcinoma .k 7 to 92 86 to 1   tiling clone, Submitted on the opposite strand 86/96
(89 %)
0 diff
(100 %id)
DB111405 thymus .k 136 to 710 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AI826170 normal prostate, Prostate .k 332 to 596 506 to 241   AAA   266/483
(55 %)
0 diff
(100 %id)
CN336560 embryonic stem cells, cell lines H1, H7, andH9 .k 829 to 1628 1 to 801   tiling clone,   801/801
(100 %)
3 diff
(99.7 %id)
DA634017 Kidney .l 1 to 571 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
BQ017072 lung, Metastatic Chondrosarcoma .l 104 to 719 617 to 2   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 616/625
(98 %)
2 diff
(99.7 %id)
DW436130 Liver .l 307 to 548 12 to 253       242/253
(95 %)
9 diff
(96.5 %id)
CD685535 normal nasopharynx .l 317 to 556 24 to 271       248/405
(61 %)
17 diff
(95.9 %id)
CD696197 normal nasopharynx .l 318 to 634 25 to 342       318/342
(92 %)
9 diff
(97.4 %id)
DA941844 Spleen .l 318 to 850 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
BP207726 coronary artery .l 356 to 911 1 to 556       556/556
(100 %)
4 diff
(99.3 %id)
DA601961   .l 356 to 911 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB107108 thymus .l 356 to 927 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB109773 thymus .l 356 to 924 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB117735 thymus .l 356 to 850 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
DA960447 Spleen .l 360 to 917 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
CA429491 Cell Line, Chondrosarcoma .l 546 to 1257 720 to 12   tiling clone, AAA   709/718
(98 %)
4 diff
(99.5 %id)
BG189790   .m 1 to 777 4 to 776 V146A F216X tiling clone,   776/777
(99 %)
12 diff
(98.5 %id)
DA554912   .n 1 to 557 6 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
BM837124 Ascites, stomach .n 1 to 535 2 to 536       536/536
(100 %)
0 diff
(100 %id)
DA971702 synovial membrane tissue from rheumatioidarthritis .o 1 to 520 8 to 527   tiling clone, capped   520/520
(100 %)
0 diff
(100 %id)
BP315450 mammary gland .o 25 to 604 1 to 582   tiling clone,   582/582
(100 %)
4 diff
(99.4 %id)
DB163329 thymus .o 26 to 562 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
FN126201 breast carcinoma .p 1 to 111 112 to 1   tiling clone, Submitted on the opposite strand 112/115
(97 %)
1 diff
(99.2 %id)
DB208915 trachea .p 29 to 557 2 to 530 Q83R tiling clone, capped   529/529
(100 %)
2 diff
(99.7 %id)
DB107426 thymus .q 1 to 576 2 to 578 exact tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
AI018464   .r 1 to 426 438 to 13 V91G tiling clone, AAA   426/426
(100 %)
2 diff
(99.6 %id)
AI183585   .s 1 to 433 432 to 1 exact tiling clone,   432/432
(100 %)
2 diff
(99.6 %id)
BM713800 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 1 to 640 1 to 640 exact tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 640/640
(100 %)
1 diff
(99.9 %id)
FN082141 breast carcinoma .t 29 to 143 1 to 114       114/123
(92 %)
5 diff
(96.0 %id)
AA429519   .t 230 to 628 1 to 399 P72H     399/399
(100 %)
1 diff
(99.8 %id)
AW303551 pooled .t 271 to 637 378 to 11 exact     368/378
(97 %)
0 diff
(100 %id)
BU738874 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 322 to 651 348 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 330/330
(100 %)
0 diff
(100 %id)
CN336559 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .u 1 to 350 10 to 359 exact tiling clone,   355/440
(80 %)
6 diff
(98.7 %id)
DB544797 hippocampus .va 1 to 444 1 to 445 R37P P51T A55G tiling clone, Submitted on the opposite strand 445/445
(100 %)
5 diff
(98.9 %id)
BQ490692 esophagus, squamous cell carcinoma .va 273 to 445 1 to 173   tiling clone, AAA   173/173
(100 %)
3 diff
(98.3 %id)
DA946193 Spleen .vb 1 to 543 2 to 544 exact tiling clone, capped   543/543
(100 %)
0 diff
(100 %id)
AL700858 human skeletal muscle .vc-u 1 to 644 4 to 645   tiling clone,   645/645
(100 %)
2 diff
(99.7 %id)
AL699991 human skeletal muscle .vc-u 1 to 644 4 to 645       645/645
(100 %)
2 diff
(99.7 %id)
DA874264 Prostate .vc-u 515 to 1075 2 to 563   tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
AV749718 Pituitary .vc-u 913 to 1262 1 to 341   tiling clone,   341/342
(99 %)
6 diff
(98.3 %id)
BF354464 head_neck .vc-u 1111 to 1426 1 to 316   tiling clone,   316/334
(94 %)
8 diff
(97.7 %id)
BF354469 head_neck .vc-u 1125 to 1426 28 to 329       302/353
(85 %)
1 diff
(99.8 %id)
BG924211 cartilage .vc-u 1198 to 1556 86 to 444   tiling clone,   359/381
(94 %)
3 diff
(99.3 %id)
DB199590 trachea .vc-u 1311 to 1848 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA568678 whole embryo, mainly head .vc-u 1390 to 2291 2 to 898   tiling clone, capped   897/907
(98 %)
21 diff
(97.7 %id)
AK027738 ovary, tumor tissue .vc-u 1449 to 3798 1 to 2350   tiling clone, available from FLJ,   2350/2350
(100 %)
2 diff
(100.0 %id)
DA812307 ovary, tumor tissue .vc-u 1450 to 2186 2 to 735   capped   734/734
(100 %)
4 diff
(99.5 %id)
AW869041 stomach_normal .vc-u 2212 to 2610 5 to 391       387/391
(98 %)
6 diff
(98.5 %id)
DR422632 eye, Pterygium .vc-u 2293 to 3003 1 to 711       711/711
(100 %)
7 diff
(99.1 %id)
AU185654 skin .vc-u 2441 to 3043 602 to 1       602/602
(100 %)
14 diff
(97.7 %id)
DB355224 whole embryo, mainly head .vc-u 2480 to 3045 559 to 1       559/565
(98 %)
22 diff
(96.2 %id)
DB330069 Prostate .vc-u 2508 to 3045 540 to 1       540/540
(100 %)
3 diff
(99.5 %id)
AW072758 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .vc-u 2636 to 3046 411 to 1       411/411
(100 %)
0 diff
(100 %id)
TI_149278383   .vc-u 2778 to 3045 360 to 91   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 270/376
(71 %)
3 diff
(99.3 %id)
BU678456 lung .vc-u 2780 to 3045 285 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 267/267
(100 %)
2 diff
(99.3 %id)
FN116561 breast carcinoma .vc-u 2789 to 2908 120 to 1     Submitted on the opposite strand 120/120
(100 %)
2 diff
(98.4 %id)
FN073365 breast carcinoma .vc-u 2895 to 2992 95 to 1     Submitted on the opposite strand 95/95
(100 %)
7 diff
(92.7 %id)
AA730418 Ewing's sarcoma .vc-u 3067 to 3359 1 to 294   tiling clone,   294/294
(100 %)
3 diff
(99.0 %id)
FN105893 breast carcinoma .vc-u 3090 to 3187 98 to 3     Submitted on the opposite strand 96/98
(97 %)
0 diff
(100 %id)
FN108101 breast carcinoma .vc-u 3126 to 3226 1 to 97       97/97
(100 %)
4 diff
(95.9 %id)
CD250943 brain, Pituitary .vc-u 3150 to 3798 60 to 707       648/1029
(62 %)
4 diff
(99.7 %id)
DB371659 ovary, tumor tissue .vc-u 3286 to 3798 515 to 1       515/517
(99 %)
7 diff
(98.7 %id)
BX116687 liver and spleen .vc-u 3417 to 4165 1 to 748       748/759
(98 %)
2 diff
(99.8 %id)
T99949 liver and spleen .vc-u 3418 to 3784 1 to 377       377/379
(99 %)
13 diff
(96.6 %id)
CB958089 Pooled-Glandular .vc-u 3454 to 4191 1 to 740   tiling clone,   740/740
(100 %)
6 diff
(99.2 %id)
AA654769   .vc-u 3497 to 3798 9 to 310   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 302/310
(97 %)
6 diff
(98.1 %id)
AW975264   .vc-u 3555 to 3815 371 to 111     Submitted on the opposite strand 261/371
(70 %)
0 diff
(100 %id)
AA664550 alveolar rhabdomyosarcoma .vc-u 3555 to 3808 254 to 1       254/254
(100 %)
2 diff
(99.3 %id)
AA773934 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vc-u 3780 to 4131 11 to 361       351/361
(97 %)
6 diff
(98.4 %id)
FN069753 breast carcinoma .vc-u 3883 to 3963 1 to 80       80/88
(90 %)
1 diff
(98.9 %id)
AW027369 thymus, pooled .vc-u 3890 to 4452 563 to 1       563/563
(100 %)
0 diff
(100 %id)
BF593483 Prostate .vc-u 3895 to 4452 582 to 25   AAA Possibly primed on the genome, locally A rich (39/41 A in genome downstream of last aligned base) 558/558
(100 %)
1 diff
(99.9 %id)
BE551052 carcinoid, lung .vc-u 3913 to 4452 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
CB164238 Liver .vc-u 4015 to 4470 462 to 7     Submitted on the opposite strand 456/462
(98 %)
0 diff
(100 %id)
AA583825 larynx .vc-u 4017 to 4476 460 to 1   tiling clone,   460/460
(100 %)
0 diff
(100 %id)
AI660022 thymus, pooled .vc-u 4062 to 4452 390 to 1       390/390
(100 %)
1 diff
(99.8 %id)
AW023794 cochlea, ear .vc-u 4086 to 4471 8 to 393       386/416
(92 %)
1 diff
(99.8 %id)
BQ188787 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc-u 4098 to 4452 1 to 355   fully sequenced, AAA Possibly primed on the genome, locally A rich (39/41 A in genome downstream of last aligned base) 355/355
(100 %)
0 diff
(100 %id)
TI_151733136   .vc-u 4098 to 4452 436 to 82   AAA Possibly primed on the genome, locally A rich (39/41 A in genome downstream of last aligned base) 355/936
(37 %)
0 diff
(100 %id)
AA677916 liver and spleen .vc-u 4132 to 4526 393 to 1   tiling clone,   393/393
(100 %)
4 diff
(99.0 %id)
R00297 liver and spleen .vc-u 4169 to 4537 378 to 1       378/381
(99 %)
22 diff
(94.3 %id)
N88728   .vc-u 4189 to 4449 1 to 257       257/259
(99 %)
8 diff
(97.0 %id)
AA508548 Prostate .vc-u 4224 to 4462 239 to 1       239/239
(100 %)
2 diff
(99.2 %id)
CK301157 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc-u 4260 to 4470 211 to 1   fully sequenced, Possibly primed on the genome, locally A rich (39/41 A in genome downstream of last aligned base) 211/211
(100 %)
0 diff
(100 %id)
AI417897 Prostate .vc-u 4270 to 4525 275 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 258/258
(100 %)
10 diff
(96.2 %id)
AW295859   .vc-u 4307 to 4534 255 to 27   tiling clone, AAA   229/248
(92 %)
0 diff
(100 %id)
BE859067 Prostate .vc-u 4311 to 4455 145 to 1       145/145
(100 %)
0 diff
(100 %id)
CV412952 prostate_normal .vc-u 4497 to 4913 422 to 8 exact tiling clone, Submitted on the opposite strand 415/424
(97 %)
0 diff
(100 %id)
CV427282 lung_tumor .vc-u 4497 to 4883 3 to 388   tiling clone,   386/388
(99 %)
6 diff
(98.5 %id)
BF358808 lung_tumor .vc-u 4548 to 4912 1 to 366 V6A     366/379
(96 %)
3 diff
(99.3 %id)
BU568422 testis .vc-u 4696 to 5464 1 to 775   tiling clone,   775/787
(98 %)
8 diff
(99.0 %id)
BF726554 eye, lens .vc-u 4802 to 5335 1 to 534       534/534
(100 %)
0 diff
(100 %id)
CD106208 brain, Pituitary .vc-u 4890 to 5487 7 to 606   tiling clone,   600/888
(67 %)
5 diff
(99.5 %id)
DB217886 trachea .vd-u 1 to 542 2 to 543   tiling clone, to resequence, capped   542/542
(100 %)
2 diff
(99.7 %id)
BX497639 Liver .vd-u 1311 to 1939 1 to 628   tiling clone,   628/628
(100 %)
1 diff
(99.9 %id)
DA591072 lung .vd-u 1836 to 2401 2 to 568 exact capped   567/567
(100 %)
3 diff
(99.5 %id)
DN919133   .vd-u 1929 to 2288 1 to 361 C16G tiling clone,   361/361
(100 %)
2 diff
(99.5 %id)
CA395943 eye, RPE/choroid .vd-u 1948 to 2497 1 to 550 exact tiling clone,   550/550
(100 %)
0 diff
(100 %id)
DB349213 trachea .vd-u 2704 to 3192 489 to 1   tiling clone, to resequence,   489/493
(99 %)
2 diff
(99.6 %id)
CB269687 adipose .vd-u 3135 to 3630 1 to 496   tiling clone,   496/496
(100 %)
2 diff
(99.6 %id)
DB319578 lung .vd-u 3337 to 3826 490 to 1   tiling clone,   490/492
(99 %)
0 diff
(100 %id)
DN919134   .vd-u 3667 to 3823 157 to 1       157/157
(100 %)
3 diff
(98.1 %id)
GD144996   .vd-u 3688 to 3823 1 to 137   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 137/137
(100 %)
7 diff
(94.9 %id)
GD145040   .vd-u 3688 to 3826 1 to 139   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 139/139
(100 %)
2 diff
(98.6 %id)
GD145100   .vd-u 3688 to 3837 1 to 150   tiling clone,   150/152
(98 %)
5 diff
(96.8 %id)
BE152068 head_neck .vd-u 3815 to 4115 16 to 317   tiling clone,   302/333
(90 %)
6 diff
(98.2 %id)
BX497640 Liver .vd-u 3920 to 4626 707 to 1   tiling clone,   707/707
(100 %)
1 diff
(99.9 %id)
BG545997 lung .ve-u 1 to 703 1 to 713   tiling clone,   713/780
(91 %)
51 diff
(93.5 %id)
AL598282   .ve-u 434 to 875 1 to 442   tiling clone,   442/442
(100 %)
0 diff
(100 %id)
CD704487 normal nasopharynx .ve-u 656 to 792 1 to 138       138/138
(100 %)
1 diff
(99.3 %id)
NM_001012505.1   .vf 1 to 890 1 to 890 exact RefSeq, AAA   890/890
(100 %)
0 diff
(100 %id)
BI116610 lung, small cell carcinoma .vf 50 to 801 1 to 751   tiling clone, available from MGC,   753/751
(100 %)
3 diff
(99.7 %id)
BC005055 Lung, small cell carcinoma .vf 51 to 890 1 to 840   tiling clone, available from MGC, AAA   840/840
(100 %)
0 diff
(100 %id)
BC071893 Lung, small cell carcinoma .vf 51 to 890 1 to 840   available from MGC, AAA   840/840
(100 %)
0 diff
(100 %id)
BC080521 Lung, small cell carcinoma .vf 51 to 890 1 to 840   available from MGC, AAA   840/840
(100 %)
0 diff
(100 %id)
BC054815 Lung, small cell carcinoma .vf 51 to 890 1 to 840   available from MGC, AAA   840/840
(100 %)
0 diff
(100 %id)
AW009677 colon .vf 443 to 892 451 to 1       451/455
(99 %)
6 diff
(98.7 %id)
BT006643   .vf 527 to 869 1 to 343       343/345
(99 %)
1 diff
(99.8 %id)
CV029974 mixed .vf 527 to 879 1 to 354       354/454
(77 %)
10 diff
(97.8 %id)
AA861161   .vf 611 to 888 291 to 14   AAA   278/278
(100 %)
8 diff
(97.2 %id)
AW845621 colon .vg-u 1 to 522 524 to 4   tiling clone,   521/525
(99 %)
0 diff
(100 %id)
BQ017021 lung, Metastatic Chondrosarcoma .vg-u 68 to 727 659 to 1 exact tiling clone,   659/659
(100 %)
2 diff
(99.7 %id)
BP397203 pancreatic islet .vg-u 114 to 708 1 to 597 V23G H24A L25P S26E C27L ...   Submitted on the opposite strand 597/597
(100 %)
2 diff
(99.7 %id)
AI475788 B-cell, chronic lymphotic leukemia .vg-u 232 to 709 478 to 1 exact     478/478
(100 %)
0 diff
(100 %id)
BG538067 lung .vh-u 1 to 708 1 to 718 Q2K L3W K4Q K5L K6E ... tiling clone,   718/721
(99 %)
60 diff
(91.7 %id)
DA519164 brain .vi 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
DA556616   .vi 40 to 592 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA490714 brain .vi 126 to 659 2 to 536   capped   535/538
(99 %)
2 diff
(99.7 %id)
DA511192 brain .vi 126 to 659 2 to 535   tiling clone, capped   534/557
(95 %)
0 diff
(100 %id)
DA483395 brain .vi 132 to 659 2 to 529   capped, AAA   528/682
(77 %)
2 diff
(99.8 %id)
DA496815 brain .vi 132 to 659 2 to 529   capped   528/585
(90 %)
0 diff
(100 %id)
DA778156 brain .vi 134 to 659 2 to 527   capped   526/571
(92 %)
0 diff
(100 %id)
DA499472 brain .vi 180 to 659 2 to 481   capped   480/568
(84 %)
0 diff
(100 %id)
DA796029 brain .vi 341 to 659 2 to 321   capped   320/566
(56 %)
1 diff
(99.9 %id)
BF883480 lung_tumor .vj-u 1 to 551 1 to 546 A3C A5S C6P P8Y S9T ... tiling clone,   546/549
(99 %)
23 diff
(95.9 %id)
BF883482 lung_tumor .vj-u 2 to 448 16 to 460 exact tiling clone,   445/464
(95 %)
5 diff
(99.0 %id)
BI012793 lung_tumor .vj-u 221 to 570 354 to 2   tiling clone,   353/354
(99 %)
0 diff
(100 %id)
BI013131 lung_tumor .vj-u 223 to 571 347 to 2   tiling clone,   346/349
(99 %)
0 diff
(100 %id)
BI012823 lung_tumor .vj-u 224 to 563 350 to 7   tiling clone,   344/354
(97 %)
0 diff
(100 %id)
CN268989 embryonic stem cells, DMSO-treated H9 cellline .vk 1 to 564 1 to 564 T2A tiling clone,   564/564
(100 %)
3 diff
(99.5 %id)
AW749148 breast .vl 1 to 564 23 to 582 R2A R8A R10A V12S Q13G ... tiling clone,   560/582
(96 %)
11 diff
(98.2 %id)
DA944491 Spleen .vm 1 to 563 2 to 565 exact tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DA958300 Spleen .vn 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
DB047943 testis .vo 1 to 540 2 to 542 exact tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
AW195732 pooled .vp 1 to 449 452 to 3 exact tiling clone,   450/452
(99 %)
3 diff
(99.4 %id)
BI051429 placenta_normal .vq-u 1 to 298 300 to 3 Q3H K10* tiling clone,   298/300
(99 %)
0 diff
(100 %id)
BX951274   .vq-u 52 to 410 1 to 359   tiling clone,   359/359
(100 %)
6 diff
(98.4 %id)
DA775875 brain .vr 1 to 365 2 to 367 exact tiling clone, capped   366/586
(62 %)
2 diff
(99.7 %id)
AA004680.
matches multiple genes
liver and spleen .vs-u 1 to 327 334 to 1 D3X F8X T9H C10P L11V ... tiling clone, also hits gene smoypabo 334/359
(93 %)
15 diff
(95.9 %id)
GD135975   .vt-u 1 to 58 7 to 64 exact tiling clone, AAA   58/64
(90 %)
6 diff
(90.7 %id)
DB727887 hippocampus Gene FOXP1, variant not shown         This clone was ignored    
BX647682 human fetal kidney Gene FOXP1, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
AV652630.
matches multiple genes
corresponding non cancerous liver tissue Gene FOXP1, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, also hits gene flerrobu    
AV652630.
matches multiple genes
corresponding non cancerous liver tissue Gene flerrobu, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, also hits gene flerrobu    
DC354093 brain Gene FOXP1, variant not shown         This clone was ignored    
DC354094 brain Gene FOXP1, variant not shown         This clone was ignored    
AV652758.
matches multiple genes
corresponding non cancerous liver tissue Gene FOXP1, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, also hits gene flerrobu    
AV652758.
matches multiple genes
corresponding non cancerous liver tissue Gene flerrobu, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, also hits gene flerrobu    
BM955847 tonsil Gene FOXP1, variant not shown         Suspected internal deletion, this clone was ignored    
BE169345 head_neck Gene FOXP1, variant not shown              
AK297649 brain Gene FOXP1, variant not shown         This clone was ignored    
BC131720 PCR rescued clones Gene FOXP1, variant not shown         Suspected internal deletion, this clone was ignored    
N68502 liver and spleen Gene FOXP1, variant not shown         Suspected internal deletion, this clone was ignored    
AA441979   Gene FOXP1, variant not shown         Suspected internal deletion, this clone was ignored    
AA574355.
matches multiple genes
  Gene FOXP1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene gorrobu    
AA574355.
matches multiple genes
  Gene gorrobu, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene gorrobu    
AI912009.
matches multiple genes
carcinoid, lung Gene FOXP1, variant not shown         This clone was ignored, also hits gene speerobu    
AI912009.
matches multiple genes
carcinoid, lung Gene speerobu, variant not shown         This clone was ignored, also hits gene speerobu    
BF001438 colon, colon tumor, RER+ Gene FOXP1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc-u, .vd-u, .ve-u, .vf, .vg-u, .vh-u, .vi, .vj-u, .vk, .vl, .vm, .vn, .vo, .vp, .vq-u, .vr, .vs-u, .vt-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI