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Gene FOXG1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
75 supporting clones for gene FOXG1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB475412 hippocampus .a-u 1 to 472 1 to 472   tiling clone,   472/472
(100 %)
1 diff
(99.8 %id)
BX404748 brain, fetal brain .a-u 12 to 1051 1 to 1038       1038/1148
(90 %)
23 diff
(98.0 %id)
BX410672 brain, fetal brain .a-u 12 to 860 1 to 847       847/946
(89 %)
14 diff
(98.6 %id)
BX410673 brain, fetal brain .a-u 12 to 541 1 to 525   tiling clone,   525/563
(93 %)
7 diff
(98.8 %id)
BX440747 brain, fetal brain .a-u 12 to 839 1 to 816       816/824
(99 %)
17 diff
(98.0 %id)
BG910224 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 14 to 911 1 to 910       910/956
(95 %)
42 diff
(95.7 %id)
BG912675 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 17 to 765 1 to 756       756/759
(99 %)
35 diff
(95.4 %id)
BX408766 brain, fetal brain .a-u 533 to 1121 1 to 589   tiling clone,   589/589
(100 %)
4 diff
(99.4 %id)
BI915241 brain .a-u 801 to 1441 1 to 641   tiling clone,   641/641
(100 %)
3 diff
(99.6 %id)
TI_57244591   .a-u 802 to 1454 33 to 684   tiling clone,   652/872
(74 %)
7 diff
(99.2 %id)
TI_57240333   .a-u 814 to 1454 71 to 713       643/1032
(62 %)
11 diff
(99.0 %id)
BI913371 brain .a-u 815 to 1445 1 to 631   tiling clone,   631/632
(99 %)
6 diff
(99.1 %id)
DB474475 hippocampus .a-u 1392 to 1587 1 to 196   tiling clone,   196/215
(91 %)
2 diff
(99.1 %id)
DR001113 fetal brain .a-u 1587 to 2232 1 to 646   tiling clone,   646/651
(99 %)
4 diff
(99.4 %id)
NM_005249.3   .a-u 1694 to 4277 1 to 2584 exact RefSeq, AAA   2584/2584
(100 %)
0 diff
(100 %id)
BC035020 testis .a-u 1851 to 4277 1 to 2427 P82R tiling clone, available from MGC, AAA   2427/2427
(100 %)
2 diff
(100.0 %id)
BG720034 testis .a-u 1858 to 2037 10 to 188   available from MGC,   179/219
(81 %)
6 diff
(97.3 %id)
BG720717 testis .a-u 2148 to 2905 1 to 765       765/765
(100 %)
23 diff
(97.0 %id)
DB461116 testis .a-u 2155 to 2630 1 to 476       476/476
(100 %)
0 diff
(100 %id)
X74142 brain .a-u 2280 to 4268 570 to 2559 A27G V28L P69R Q70A Q71A ...     2457/2559
(96 %)
39 diff
(98.5 %id)
TI_57244312   .a-u 2286 to 3135 27 to 886       860/927
(92 %)
32 diff
(96.6 %id)
BC040960 Brain, fetal, whole pooled .a-u 2290 to 4279 1 to 1985   available from MGC, AAA   1985/1985
(100 %)
2 diff
(99.9 %id)
BI916014 brain .a-u 2290 to 3135 1 to 856   available from MGC,   856/897
(95 %)
30 diff
(96.7 %id)
X74143 brain .a-u 2319 to 3454 571 to 1703 A27G V28L P79R P80R A81G ...     1574/1703
(92 %)
36 diff
(97.9 %id)
X74144 brain .a-u 2337 to 3005 1 to 672       672/672
(100 %)
13 diff
(98.1 %id)
BG913707 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 2429 to 3031 46 to 649       604/649
(93 %)
6 diff
(99.1 %id)
BI752256 brain .a-u 2451 to 3267 1 to 817       817/817
(100 %)
3 diff
(99.7 %id)
TI_57215280   .a-u 2451 to 3267 67 to 883       817/883
(92 %)
6 diff
(99.4 %id)
BI831281 brain, medulla .a-u 2582 to 3104 190 to 712       523/712
(73 %)
6 diff
(99.2 %id)
TI_57176959   .a-u 2582 to 3104 264 to 786       523/786
(66 %)
6 diff
(99.3 %id)
F13413 brain, total brain .a-u 2698 to 3035 1 to 338       338/338
(100 %)
4 diff
(98.9 %id)
R19033 whole brain .a-u 2700 to 3051 1 to 355       355/357
(99 %)
21 diff
(94.2 %id)
R60390 whole brain .a-u 2720 to 3090 1 to 373       373/375
(99 %)
7 diff
(98.2 %id)
BQ067798 brain .a-u 2815 to 3763 1 to 952       952/1032
(92 %)
15 diff
(98.6 %id)
DA326225 hippocampus .a-u 2875 to 3420 2 to 550   capped   549/549
(100 %)
5 diff
(99.1 %id)
CR602240 fetal brain .a-u 2982 to 3938 1 to 957       957/957
(100 %)
0 diff
(100 %id)
BX441212 brain, fetal brain .a-u 2982 to 3483 1 to 506   AAA   506/1071
(47 %)
16 diff
(98.6 %id)
BX449915 brain, fetal brain .a-u 2982 to 3926 1 to 938       938/938
(100 %)
6 diff
(99.4 %id)
BM759932 stomach .a-u 3109 to 3556 1 to 448       448/448
(100 %)
1 diff
(99.8 %id)
BE271928 adenocarcinoma cell line, ovary .a-u 3170 to 3865 1 to 686       686/721
(95 %)
23 diff
(96.9 %id)
BE741618 adenocarcinoma cell line, ovary .a-u 3171 to 3970 1 to 790       790/810
(97 %)
13 diff
(98.4 %id)
D54439   .a-u 3215 to 3536 1 to 319       319/319
(100 %)
2 diff
(99.4 %id)
D55073   .a-u 3215 to 3425 1 to 209       209/211
(99 %)
2 diff
(99.1 %id)
BX428901 brain, fetal brain .a-u 3254 to 4256 996 to 1       996/996
(100 %)
40 diff
(96.0 %id)
CR617342 fetal brain .a-u 3410 to 4280 1 to 871       871/871
(100 %)
0 diff
(100 %id)
BX419354 brain, fetal brain .a-u 3410 to 4280 1 to 866       866/866
(100 %)
2 diff
(99.8 %id)
BX450298 brain, fetal brain .a-u 3450 to 4126 1 to 673       673/799
(84 %)
27 diff
(96.7 %id)
D53978   .a-u 3466 to 3831 1 to 364       364/364
(100 %)
6 diff
(98.4 %id)
AW023177 cochlea, ear .a-u 3529 to 3979 1 to 451       451/451
(100 %)
4 diff
(99.2 %id)
M78647   .a-u 3545 to 3746 126 to 327       202/327
(61 %)
6 diff
(98.2 %id)
BM782352 stomach .a-u 3660 to 4259 1 to 601       601/601
(100 %)
1 diff
(99.9 %id)
BE672426 pooled germ cell tumors .a-u 3783 to 4277 495 to 1       495/495
(100 %)
4 diff
(99.2 %id)
DB543029 hippocampus .a-u 3788 to 4278 1 to 491     Submitted on the opposite strand 491/492
(99 %)
3 diff
(99.4 %id)
DB543294 hippocampus .a-u 3799 to 4279 1 to 481     Submitted on the opposite strand 481/481
(100 %)
0 diff
(100 %id)
BE672434 pooled germ cell tumors .a-u 3805 to 4277 473 to 1       473/473
(100 %)
0 diff
(100 %id)
DB575249 hypothalamus .a-u 3808 to 4275 1 to 468     Submitted on the opposite strand 468/470
(99 %)
1 diff
(99.8 %id)
DB544235 hippocampus .a-u 3819 to 4280 1 to 462     Submitted on the opposite strand 462/463
(99 %)
3 diff
(99.4 %id)
AI371691 brain, glioblastoma (pooled) .a-u 3819 to 4271 453 to 1       453/453
(100 %)
0 diff
(100 %id)
DB526530 testis .a-u 3829 to 4277 1 to 449     Submitted on the opposite strand 449/449
(100 %)
0 diff
(100 %id)
AI631467 pooled germ cell tumors .a-u 3834 to 4277 444 to 1       444/444
(100 %)
8 diff
(98.2 %id)
DB529860 hippocampus .a-u 3844 to 4280 1 to 441     Submitted on the opposite strand 441/442
(99 %)
19 diff
(95.8 %id)
R60332 whole brain .a-u 3865 to 4281 442 to 22   AAA   421/424
(99 %)
16 diff
(96.3 %id)
DB567446 hypothalamus .a-u 3867 to 4275 1 to 409     Submitted on the opposite strand 409/411
(99 %)
3 diff
(99.3 %id)
D52371   .a-u 3903 to 4323 1 to 420   tiling clone,   420/420
(100 %)
6 diff
(98.6 %id)
R44020 whole brain .a-u 3910 to 4281 395 to 22   AAA   374/376
(99 %)
4 diff
(99.0 %id)
T28436 brain .a-u 3926 to 4235 1 to 310       310/310
(100 %)
0 diff
(100 %id)
AW949919   .a-u 3940 to 4277 1 to 338   AAA   338/338
(100 %)
0 diff
(100 %id)
AW952791   .a-u 3940 to 4277 1 to 337   AAA   337/337
(100 %)
1 diff
(99.8 %id)
AI362054 brain, glioblastoma (pooled) .a-u 3963 to 4279 317 to 1       317/317
(100 %)
3 diff
(99.1 %id)
BG222819 brain, glioblastoma without EGFR amplification .a-u 3965 to 4282 318 to 1       318/318
(100 %)
0 diff
(100 %id)
BF054748 brain, oligodendroglioma .a-u 3981 to 4277 40 to 336       297/336
(88 %)
7 diff
(98.0 %id)
AA813565   .a-u 3986 to 4278 299 to 7       293/299
(97 %)
0 diff
(100 %id)
F08835 brain, total brain .a-u 4011 to 4281 271 to 1       271/271
(100 %)
0 diff
(100 %id)
BX431060 brain, fetal brain .a-u 4168 to 4280 1 to 109       109/115
(94 %)
7 diff
(94.0 %id)
BC050072 Brain, hippocampus Gene FOXG1, variant not shown       available from MGC, AAA This clone was ignored    
DB474221 hippocampus Gene FOXG1, variant not shown         Suspected internal deletion, this clone was ignored    
BI544529 brain, hippocampus Gene FOXG1, variant not shown         This clone was ignored    
TI_44000483   Gene FOXG1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI