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Gene FOXF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
34 supporting clones for gene FOXF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001452.1   .a 1 to 2187 1 to 2187 exact RefSeq,   2187/2187
(100 %)
0 diff
(100 %id)
U13220   .a 1 to 2187 1 to 2187 exact tiling clone,   2187/2187
(100 %)
0 diff
(100 %id)
BI335173 cervical carcinoma cell line, cervix .a 513 to 1318 1 to 822       822/822
(100 %)
22 diff
(97.4 %id)
CA388621 eye, RPE/choroid .a 640 to 1147 1 to 508       508/508
(100 %)
0 diff
(100 %id)
BG120697 adenocarcinoma, cell line, Liver .a 1020 to 1599 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
TI_159676767   .a 1050 to 1776 55 to 786       732/1070
(68 %)
42 diff
(96.1 %id)
AI377768 pooled .a 1303 to 2190 898 to 12   AAA   887/887
(100 %)
25 diff
(97.2 %id)
TI_149287917   .a 1303 to 2186 945 to 78   AAA   868/956
(90 %)
26 diff
(97.3 %id)
AI217032 brain, hippocampus (see description) .a 1315 to 1485 27 to 197       171/197
(86 %)
6 diff
(97.0 %id)
CB857371 anterior tongue, pooled .a 1358 to 1743 1 to 386   fully sequenced,   386/386
(100 %)
0 diff
(100 %id)
TI_154110401   .a 1366 to 2193 892 to 79   AAA   814/936
(86 %)
17 diff
(98.2 %id)
BQ299938 bladder_tumor .a 1408 to 1846 46 to 486       441/486
(90 %)
6 diff
(98.8 %id)
BI257383 cervical carcinoma cell line, cervix .a 1453 to 2176 1 to 730       730/761
(95 %)
20 diff
(97.4 %id)
CA448136 Chondrosarcoma, Left Pubic Bone .a 1498 to 2193 712 to 19   tiling clone, AAA   694/699
(99 %)
1 diff
(99.9 %id)
BM989973 lung, Lung Focal Fibrosis .a 1502 to 2186 702 to 19   AAA   684/684
(100 %)
1 diff
(99.9 %id)
BM970095 lung .a 1518 to 2186 683 to 16   AAA   668/668
(100 %)
1 diff
(99.9 %id)
CD676558 eye, Trabecular meshwork .a 1523 to 2077 1 to 555       555/555
(100 %)
0 diff
(100 %id)
BM988565 lung, Metastatic Chondrosarcoma .a 1540 to 2186 661 to 16   AAA   646/650
(99 %)
4 diff
(99.4 %id)
BE773408 prostate_tumor .a 1565 to 1776 212 to 1       212/212
(100 %)
1 diff
(99.6 %id)
BQ021409 lung, Metastatic Chondrosarcoma .a 1611 to 2186 591 to 16   AAA   576/576
(100 %)
0 diff
(100 %id)
AW337925 adenocarcinoma, Pancreas .a 1693 to 2187 494 to 1       494/494
(100 %)
1 diff
(99.8 %id)
AW057861 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1708 to 2186 478 to 1       478/478
(100 %)
1 diff
(99.8 %id)
CB857370 anterior tongue, pooled .a 1713 to 2186 508 to 36   fully sequenced, AAA   473/473
(100 %)
2 diff
(99.6 %id)
N33380 melanocyte .a 1733 to 2187 456 to 1       456/456
(100 %)
5 diff
(99.0 %id)
AA340513 Kidney .a 1734 to 2045 1 to 314     Submitted on the opposite strand 314/314
(100 %)
2 diff
(99.4 %id)
W24258 senescent fibroblast .a 1734 to 2168 1 to 435       435/435
(100 %)
0 diff
(100 %id)
AW956398   .a 1735 to 2186 1 to 452   AAA   452/452
(100 %)
0 diff
(100 %id)
BX108823 senescent fibroblast .a 1735 to 2186 1 to 453   AAA   453/453
(100 %)
1 diff
(99.8 %id)
AI016883 pooled .a 1823 to 2186 374 to 12   AAA   363/363
(100 %)
3 diff
(99.2 %id)
BX412807 brain, fetal brain .a 1914 to 2176 261 to 1       261/261
(100 %)
13 diff
(95.1 %id)
BF941257 dorsal root ganglia .a 1929 to 2172 257 to 15       243/257
(94 %)
0 diff
(100 %id)
AI888929 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1966 to 2186 266 to 47   AAA   220/220
(100 %)
1 diff
(99.6 %id)
CR607456 HeLa cells Cot 25-normalized .b 1 to 962 1 to 962 exact tiling clone,   962/962
(100 %)
0 diff
(100 %id)
BX384426   .b 1 to 962 1 to 961 exact fully sequenced,   961/961
(100 %)
3 diff
(99.7 %id)
BX363207   .b 660 to 896 237 to 1   fully sequenced,   237/237
(100 %)
0 diff
(100 %id)
DB356922 whole embryo, mainly head Gene FOXF2, variant not shown         Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored    
DA570176 whole embryo, mainly head Gene FOXF2, variant not shown       capped Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI