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Gene FOXB1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
32 supporting clones for gene FOXB1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA717332   .a 1 to 543 2 to 544   tiling clone, to resequence, capped   543/543
(100 %)
0 diff
(100 %id)
DB324184   .a 1248 to 1803 551 to 3   tiling clone, to resequence,   549/552
(99 %)
0 diff
(100 %id)
DA684205   .b -9 to 532 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DA684635   .b -9 to 525 2 to 536   tiling clone, capped   535/535
(100 %)
1 diff
(99.9 %id)
DA712686   .b 1 to 561 2 to 567   capped   566/566
(100 %)
6 diff
(99.0 %id)
DB173211 kidney, tumor tissue .b 32 to 600 8 to 577   capped   570/570
(100 %)
2 diff
(99.7 %id)
AK314075   .b 139 to 1423 1 to 1285 exact tiling clone,   1285/1285
(100 %)
1 diff
(100.0 %id)
BC113710 Pooled,bladder, uterus, placenta, PCRrescued clones .b 383 to 1457 1 to 1074 exact     1074/1074
(100 %)
1 diff
(100.0 %id)
AK290944   .b 389 to 1638 423 to 1672 exact tiling clone,   1672/1672
(100 %)
1 diff
(100.0 %id)
NM_012182.2   .b 389 to 1425 423 to 1459 exact RefSeq,   1459/1459
(100 %)
0 diff
(100 %id)
DA685771   .b 389 to 512 423 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA713666   .b 389 to 552 414 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
AF071554   .b 418 to 1425 1 to 1004       1004/1004
(100 %)
6 diff
(99.5 %id)
U87393 lungs .b 467 to 961 1 to 492       492/495
(99 %)
5 diff
(99.0 %id)
BP218014 caudate nucleus .b 916 to 1498 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
TI_1243019317   .b 1012 to 1457 10 to 455       446/998
(44 %)
6 diff
(99.4 %id)
CN311295 embryonic stem cells, cell lines H1, H7, andH9 .c 94 to 388 1 to 295   tiling clone,   295/307
(96 %)
2 diff
(99.4 %id)
EF565104   .c 389 to 647 414 to 672 exact tiling clone,   672/679
(98 %)
22 diff
(96.8 %id)
DB500943.
matches multiple genes
hypothalamus .c 389 to 452 423 to 486     also hits gene beegawby 486/486
(100 %)
4 diff
(99.2 %id)
BI458015 brain, hypothalamus .c 389 to 750 428 to 791 exact tiling clone,   791/791
(100 %)
11 diff
(98.7 %id)
TI_45216382   .c 389 to 546 552 to 710       579/805
(71 %)
12 diff
(98.6 %id)
BX106701 pooled .d 1 to 156 1 to 156 exact tiling clone,   156/158
(98 %)
1 diff
(99.4 %id)
BG193789   .d 46 to 444 1 to 399   tiling clone, AAA   399/399
(100 %)
0 diff
(100 %id)
BG213417   .d 48 to 439 396 to 8     Submitted on the opposite strand 389/401
(97 %)
1 diff
(99.8 %id)
BG205430   .d 58 to 466 56 to 464   tiling clone, AAA   409/464
(88 %)
14 diff
(97.0 %id)
AW117354 pooled .d 93 to 444 370 to 19   AAA   352/355
(99 %)
4 diff
(98.9 %id)
AW080481 pooled .d 110 to 466 369 to 13   tiling clone, AAA   357/357
(100 %)
6 diff
(98.4 %id)
AW517154 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e-u 1 to 428 437 to 10 exact tiling clone,   428/437
(97 %)
0 diff
(100 %id)
BG181760   .f 1 to 384 6 to 389 V2T L6F Q23X I25R L27R ... tiling clone, AAA   389/389
(100 %)
20 diff
(94.9 %id)
BG201901   .f 1 to 384 6 to 389 V2A L6F Q23H I25S L26V ... tiling clone, AAA   389/389
(100 %)
17 diff
(95.7 %id)
AI221752 pooled .f 46 to 391 350 to 5   tiling clone,   346/350
(98 %)
0 diff
(100 %id)
BG200767   .g 1 to 371 1 to 371 L2C C3S tiling clone, AAA   371/371
(100 %)
5 diff
(98.7 %id)
BI603644 brain, hypothalamus Gene FOXB1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C