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Gene FOXA3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
55 supporting clones for gene FOXA3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC016024 Uterus, leiomyosarcoma .a 1 to 1988 1 to 1988 exact tiling clone, available from MGC, AAA   1988/1988
(100 %)
0 diff
(100 %id)
NM_004497.2   .a 1 to 1988 1 to 1988 exact RefSeq, AAA   1988/1988
(100 %)
0 diff
(100 %id)
BE884556 leiomyosarcoma, uterus .a 22 to 695 1 to 680       680/790
(86 %)
14 diff
(98.3 %id)
BP342940 stomach mucosa .a 63 to 645 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
AK223473 stomach mucosa .a 72 to 1295 1 to 1224 K107M     1224/1224
(100 %)
1 diff
(100.0 %id)
AL531757 brain, fetal liver, Liver, neuroblastoma cells .a 190 to 1279 1 to 1078 Y50X P51X Y109I R110G R111G ...     1078/1078
(100 %)
58 diff
(94.7 %id)
TI_1948076148   .a 195 to 1236 135 to 1172   fully sequenced,   1038/1172
(88 %)
44 diff
(96.3 %id)
TI_1948076329   .a 195 to 1252 134 to 1186 L2A R231Q T246H V247S T248H ... fully sequenced,   1053/1186
(88 %)
42 diff
(96.5 %id)
TI_1948076508   .a 195 to 1252 135 to 1199 T241N P256S A270P G274C P276T ... fully sequenced,   1065/1199
(88 %)
53 diff
(95.6 %id)
TI_1948076687   .a 195 to 1254 131 to 1180 A245G G264A V268G A270L L271W ... fully sequenced,   1050/1180
(88 %)
46 diff
(96.2 %id)
BT006720   .a 198 to 1250 1 to 1053 exact     1053/1053
(100 %)
0 diff
(100 %id)
CV023284 mixed .a 198 to 486 1 to 289       289/289
(100 %)
0 diff
(100 %id)
L12141 Liver .a 198 to 1250 1 to 1044       1044/1044
(100 %)
16 diff
(98.5 %id)
CN284166 embryonic stem cells, cell lines H1, H7, andH9 .a 290 to 902 1 to 613       613/613
(100 %)
0 diff
(100 %id)
CX784350 human embryonic stem cells .a 361 to 1114 1 to 755       755/755
(100 %)
1 diff
(99.9 %id)
BG248152 adenocarcinoma cell line, colon .a 639 to 1318 1 to 661       661/939
(70 %)
42 diff
(95.6 %id)
TI_1948076149   .a 735 to 1255 654 to 119   fully sequenced,   536/654
(81 %)
5 diff
(99.3 %id)
TI_1948076509   .a 747 to 1255 633 to 120   fully sequenced,   514/633
(81 %)
5 diff
(99.3 %id)
TI_1948076688   .a 749 to 1255 649 to 121   fully sequenced,   529/649
(81 %)
5 diff
(99.3 %id)
TI_1948076330   .a 775 to 1255 606 to 120   fully sequenced,   487/606
(80 %)
5 diff
(99.2 %id)
BM796739 Ascites, stomach .a 847 to 1410 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
AW582880 Islets of Langerhans, Pancreas .a 881 to 1330 1 to 450       450/450
(100 %)
0 diff
(100 %id)
BX431778 fetal liver, Liver .a 961 to 1329 1 to 370       370/962
(38 %)
13 diff
(98.7 %id)
BX431777 fetal liver, Liver .a 966 to 1699 1 to 744       744/871
(85 %)
52 diff
(94.1 %id)
BI963974 Islets of Langerhans, Pancreas .a 978 to 1291 1 to 313       313/313
(100 %)
6 diff
(98.1 %id)
CK903679 Islets of Langerhans, Pancreas .a 987 to 1569 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BX117799 liver and spleen .a 1000 to 1771 1 to 772       772/772
(100 %)
0 diff
(100 %id)
H50875 liver and spleen .a 1000 to 1439 1 to 448       448/455
(98 %)
11 diff
(97.6 %id)
AV659661 corresponding non cancerous liver tissue .a 1058 to 1475 1 to 418     Submitted on the opposite strand 418/418
(100 %)
8 diff
(98.1 %id)
BM823797 Ascites, stomach .a 1076 to 1558 1 to 483       483/483
(100 %)
0 diff
(100 %id)
AW578743 colon .a 1109 to 1698 26 to 619       594/624
(95 %)
31 diff
(95.1 %id)
BF237764 leiomyosarcoma cell line, uterus .a 1125 to 1723 1 to 615       615/1041
(59 %)
34 diff
(96.8 %id)
AV697549 hepatocellular carcinoma .a 1198 to 1642 1 to 442       442/442
(100 %)
2 diff
(99.6 %id)
BQ083358 stomach .a 1199 to 1710 1 to 512       512/512
(100 %)
0 diff
(100 %id)
BM825618 stomach .a 1199 to 1620 1 to 422       422/422
(100 %)
1 diff
(99.8 %id)
BQ082743 stomach .a 1219 to 1772 1 to 554       554/554
(100 %)
0 diff
(100 %id)
BM826786 stomach .a 1219 to 1611 1 to 394       394/394
(100 %)
1 diff
(99.8 %id)
BQ008998 Chondrosarcoma, Left Pelvis .a 1254 to 1988 749 to 19   AAA   731/735
(99 %)
4 diff
(99.5 %id)
BQ322668 colon_est .a 1257 to 1718 1 to 463       463/463
(100 %)
12 diff
(97.5 %id)
BM853521 Ascites, stomach .a 1267 to 1819 1 to 553       553/553
(100 %)
0 diff
(100 %id)
BM766874 Ascites, stomach .a 1278 to 1786 1 to 509       509/509
(100 %)
1 diff
(99.9 %id)
BU622157 Cell Line, Chondrosarcoma .a 1280 to 1988 728 to 19   AAA   710/710
(100 %)
2 diff
(99.8 %id)
BM824196 Ascites, stomach .a 1293 to 1872 1 to 580       580/580
(100 %)
0 diff
(100 %id)
T25070   .a 1384 to 1536 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
BP321866 Pancreas .a 1472 to 1828 1 to 357       357/581
(61 %)
5 diff
(99.2 %id)
AL564159 brain, fetal liver, Liver, neuroblastoma cells .a 1509 to 1945 445 to 1       953/1018
(93 %)
102 diff
(90.0 %id)
R99562 liver and spleen .a 1516 to 1973 463 to 1       463/465
(99 %)
15 diff
(96.8 %id)
AA776326 liver and spleen .a 1518 to 1948 471 to 40       432/471
(91 %)
0 diff
(100 %id)
AI765153 colon, colon tumor, RER+ .a 1524 to 1988 465 to 1       465/465
(100 %)
0 diff
(100 %id)
BI963714 Islets of Langerhans, Pancreas .a 1526 to 1988 476 to 14   AAA   463/463
(100 %)
2 diff
(99.6 %id)
AI991177 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1536 to 1989 455 to 2       454/455
(99 %)
0 diff
(100 %id)
AI310431 adenocarcinoma, colon .a 1541 to 1989 450 to 2       449/450
(99 %)
0 diff
(100 %id)
AI983401 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1545 to 1988 454 to 11   AAA   444/444
(100 %)
2 diff
(99.6 %id)
AA602377 normal prostate, Prostate .a 1586 to 1988 402 to 1       402/402
(100 %)
1 diff
(99.8 %id)
AI867382 colon, colon tumor, RER+ .a 1632 to 1988 356 to 1       356/356
(100 %)
2 diff
(99.5 %id)
H50876 liver and spleen .a 1667 to 1984 325 to 8       318/325
(97 %)
0 diff
(100 %id)
AA468705 colon .a 1693 to 1994 305 to 4       302/305
(99 %)
0 diff
(100 %id)
CK903678 Islets of Langerhans, Pancreas .a 1807 to 1988 195 to 14   AAA   182/182
(100 %)
0 diff
(100 %id)
AI392817 B-cell, chronic lymphotic leukemia Gene FOXA3, variant not shown         Suspected internal deletion, this clone was ignored    
BF588731 colon, colon tumor, RER+ Gene FOXA3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes CI