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Gene HTRA4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
43 supporting clones for gene HTRA4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC423042 uterus .a 1 to 367 1 to 367   tiling clone,   367/367
(100 %)
1 diff
(99.8 %id)
NM_153692.3   .a 158 to 2242 1 to 2085 exact RefSeq, AAA Possibly primed on the genome, locally A rich (20/23 A in genome downstream of last aligned base) 2085/2085
(100 %)
0 diff
(100 %id)
DA842970 placenta .a 158 to 749 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
BX380962 Placenta Cot 25-normalized .a 173 to 1180 1 to 998       998/998
(100 %)
13 diff
(98.7 %id)
AK075205 placenta .a 187 to 1730 1 to 1544 exact available from FLJ,   1544/1544
(100 %)
2 diff
(99.9 %id)
CB997220 placenta, pre-eclamptic placenta .a 187 to 742 28 to 586       559/849
(65 %)
9 diff
(99.0 %id)
CB959959 Human Placenta, placenta .a 187 to 742 28 to 584       557/847
(65 %)
5 diff
(99.5 %id)
DA832523 placenta .a 188 to 652 2 to 470   capped   469/510
(91 %)
10 diff
(98.1 %id)
DA840939 placenta .a 188 to 592 2 to 406   capped   405/405
(100 %)
0 diff
(100 %id)
DA841499 placenta .a 188 to 624 2 to 438   capped   437/437
(100 %)
0 diff
(100 %id)
DA843735 placenta .a 188 to 755 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA844025 placenta .a 188 to 752 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CR590249 Placenta Cot 25-normalized .a 195 to 1797 1 to 1603 exact tiling clone,   1603/1603
(100 %)
0 diff
(100 %id)
AL553302 placenta, Placenta Cot 25-normalized .a 195 to 954 1 to 760   fully sequenced,   760/760
(100 %)
0 diff
(100 %id)
CR601506 Placenta Cot 25-normalized .a 201 to 1694 1 to 1494       1494/1494
(100 %)
0 diff
(100 %id)
AL545759 placenta, Placenta Cot 25-normalized .a 201 to 1074 1 to 874   fully sequenced,   874/874
(100 %)
3 diff
(99.7 %id)
AL551062 placenta, Placenta Cot 25-normalized .a 204 to 1238 1 to 1029       1029/1066
(96 %)
17 diff
(98.5 %id)
BC057765 Placenta, pre-eclamptic .a 226 to 1730 1 to 1505 V416F available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 1505/1505
(100 %)
3 diff
(99.9 %id)
CB961876 placenta, pre-eclamptic placenta .a 226 to 1005 28 to 816       789/820
(96 %)
24 diff
(97.1 %id)
CB961875 placenta, pre-eclamptic placenta .a 226 to 839 28 to 645       618/823
(75 %)
18 diff
(97.9 %id)
AL551947 placenta, Placenta Cot 25-normalized .a 235 to 1218 1 to 980   fully sequenced,   980/980
(100 %)
5 diff
(99.5 %id)
DA846906 placenta .a 236 to 556 2 to 322   capped   321/321
(100 %)
1 diff
(99.7 %id)
DA843466 placenta .a 238 to 818 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA850359 placenta .a 244 to 797 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DR004837 placenta .a 266 to 951 1 to 688       688/688
(100 %)
4 diff
(99.5 %id)
DR004902 placenta .a 266 to 940 1 to 677       677/677
(100 %)
4 diff
(99.5 %id)
BX340346 Placenta Cot 25-normalized .a 737 to 1181 503 to 937       435/671
(64 %)
28 diff
(95.9 %id)
AL576444 placenta, Placenta Cot 25-normalized .a 924 to 1797 874 to 1   fully sequenced,   874/874
(100 %)
3 diff
(99.7 %id)
BQ370308 placenta_normal .a 969 to 1320 20 to 367       348/367
(94 %)
7 diff
(98.1 %id)
BQ370309 placenta_normal .a 969 to 1320 18 to 365       348/365
(95 %)
7 diff
(98.1 %id)
AL545720 placenta, Placenta Cot 25-normalized .a 1013 to 1694 680 to 1   fully sequenced,   680/680
(100 %)
6 diff
(99.2 %id)
BQ370316 placenta_normal .a 1020 to 1333 318 to 12       309/318
(97 %)
7 diff
(97.8 %id)
BQ370342 placenta_normal .a 1044 to 1393 368 to 18       351/370
(94 %)
2 diff
(99.5 %id)
BQ011847 placenta .a 1165 to 1730 584 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 566/566
(100 %)
3 diff
(99.5 %id)
AL551918 placenta, Placenta Cot 25-normalized .a 1188 to 2239 1041 to 1   fully sequenced,   1041/1041
(100 %)
20 diff
(98.1 %id)
BX416892 placenta .a 1240 to 2183 1 to 944       944/944
(100 %)
2 diff
(99.8 %id)
DB378756 placenta .a 1271 to 1730 460 to 1       460/589
(78 %)
8 diff
(98.7 %id)
BF511757   .a 1304 to 1723 445 to 26   AAA   420/432
(97 %)
1 diff
(99.8 %id)
BU753896 placenta .a 1339 to 1730 409 to 18   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 392/392
(100 %)
1 diff
(99.8 %id)
BX358760 Placenta Cot 25-normalized .a 1447 to 2218 777 to 1       777/777
(100 %)
14 diff
(98.2 %id)
AL574735 placenta, Placenta Cot 25-normalized .a 1453 to 2213 795 to 31       765/795
(96 %)
4 diff
(99.5 %id)
AY188774 placenta .a 1639 to 2242 1 to 604   tiling clone, AAA Possibly primed on the genome, locally A rich (20/23 A in genome downstream of last aligned base) 604/604
(100 %)
3 diff
(99.6 %id)
BX451410 placenta .a 2078 to 2259 1 to 182   tiling clone,   182/183
(99 %)
1 diff
(99.5 %id)
AA151513 uterus .b-u 1 to 369 1 to 377 R14E T15L E16R R17G R18E ... tiling clone,   377/432
(87 %)
12 diff
(97.3 %id)
CV341876 head_neck .c-u 1 to 142 1 to 142 L19* tiling clone,   142/145
(97 %)
3 diff
(98.0 %id)
AK300197 placenta Gene HTRA4, variant not shown         Suspected internal deletion, this clone was ignored    
CB991519 placenta, pre-eclamptic placenta Gene HTRA4, variant not shown         Suspected internal deletion, this clone was ignored    
DC380682 placenta Gene HTRA4, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C