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Gene SHISA6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
72 supporting clones for gene SHISA6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_207386.3   .a 1 to 7415 1 to 7415 exact RefSeq,   7415/7415
(100 %)
0 diff
(100 %id)
AK128003 testis .a 658 to 2231 1 to 1574   tiling clone, available from FLJ,   1574/1574
(100 %)
1 diff
(100.0 %id)
DB050231 testis .a 659 to 1235 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB338512 testis .a 1768 to 2231 464 to 1       464/466
(99 %)
1 diff
(99.8 %id)
NM_001173462.1   .b 1 to 7358 1 to 7358 exact RefSeq,   7358/7358
(100 %)
0 diff
(100 %id)
TI_154004653   .b 161 to 791 78 to 711     Submitted on the opposite strand 634/1370
(46 %)
12 diff
(99.2 %id)
TI_154088328   .b 161 to 726 68 to 633   tiling clone, Submitted on the opposite strand 566/636
(88 %)
7 diff
(98.9 %id)
DY654728 pooled .b 274 to 714 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
TI_1210517558   .b 293 to 753 1 to 462       462/466
(99 %)
13 diff
(97.3 %id)
DY654727 pooled .b 314 to 745 1 to 432       432/432
(100 %)
5 diff
(98.9 %id)
DY654631 pooled .b 430 to 639 1 to 210       210/212
(99 %)
2 diff
(99.1 %id)
TI_1210518718   .b 496 to 806 1 to 309   tiling clone,   309/806
(38 %)
11 diff
(98.7 %id)
DQ070854   .b 637 to 1599 13 to 975   tiling clone,   963/975
(98 %)
10 diff
(99.0 %id)
DA108094 cerebellum .b 3019 to 3564 2 to 547   tiling clone, capped   546/551
(99 %)
1 diff
(99.9 %id)
DA320836 hippocampus .b 3049 to 3630 2 to 583   tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
DA123990 cerebellum .b 4292 to 4851 2 to 562   tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DA410622 thalamus .b 4313 to 4899 2 to 588   tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
AK095052 hippocampus .b 4451 to 7356 1 to 2906   tiling clone, available from FLJ,   2906/2906
(100 %)
4 diff
(99.9 %id)
DB180107 kidney, tumor tissue .b 4451 to 5003 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA304786 hippocampus .b 4452 to 5034 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB272893 uterus .b 4575 to 5135 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA291504 hippocampus .b 4618 to 5157 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA396399 thalamus .b 4843 to 5427 2 to 586   capped   585/585
(100 %)
3 diff
(99.5 %id)
DA160944 amygdala .b 4886 to 5464 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
BF926475 nervous_tumor .b 4949 to 5409 1 to 462       462/462
(100 %)
8 diff
(98.3 %id)
AK094349 cerebellum .b 5052 to 7356 1 to 2304   tiling clone, available from FLJ,   2304/2304
(100 %)
2 diff
(100.0 %id)
DA062427 cerebellum .b 5053 to 5620 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA485528 brain .b 5277 to 5855 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
BC105704 PCR rescued clones .b 5295 to 6637 1 to 1343   tiling clone,   1343/1343
(100 %)
0 diff
(100 %id)
BC105705 PCR rescued clones .b 5295 to 6637 1 to 1343       1343/1343
(100 %)
0 diff
(100 %id)
BC105707 PCR rescued clones .b 5295 to 6637 1 to 1343       1343/1343
(100 %)
0 diff
(100 %id)
BC105706 PCR rescued clones .b 5296 to 6637 1 to 1342       1342/1342
(100 %)
2 diff
(99.9 %id)
DA077173 cerebellum .b 5396 to 5965 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA091809 cerebellum .b 5438 to 6019 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA061901 cerebellum .b 5554 to 6078 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
H18818 whole brain .b 5687 to 6154 1 to 474       474/474
(100 %)
7 diff
(98.6 %id)
H08885 whole brain .b 5942 to 6337 1 to 409       409/436
(93 %)
16 diff
(96.4 %id)
DB308186 hippocampus .b 6803 to 7356 555 to 1       555/555
(100 %)
3 diff
(99.5 %id)
DB297090 cerebellum .b 6812 to 7356 545 to 1       545/545
(100 %)
0 diff
(100 %id)
DB299652 cerebellum .b 6844 to 7356 513 to 1       513/519
(98 %)
1 diff
(99.9 %id)
H18819 whole brain .b 7173 to 7356 200 to 15   AAA   186/186
(100 %)
2 diff
(99.0 %id)
NM_001173461.1   .c 1 to 7262 1 to 7262 exact RefSeq,   7262/7262
(100 %)
0 diff
(100 %id)
AK127379 subthalamic nucleus .c 307 to 2078 1 to 1772   tiling clone, available from FLJ,   1772/1772
(100 %)
0 diff
(100 %id)
DA362563 subthalamic nucleus .c 308 to 865 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BC130008 PCR rescued clones, C list .d 1 to 794 794 to 1 exact   Submitted on the opposite strand 794/794
(100 %)
0 diff
(100 %id)
BC150526 PCR rescued clones, C list .d 1 to 796 796 to 1 exact tiling clone, Submitted on the opposite strand 796/796
(100 %)
0 diff
(100 %id)
BC150527 PCR rescued clones, C list .d 1 to 796 796 to 1 exact   Submitted on the opposite strand 796/796
(100 %)
0 diff
(100 %id)
TI_1210517442   .e 1 to 498 515 to 18   tiling clone,   498/755
(65 %)
1 diff
(99.9 %id)
DY654632 pooled .e 3 to 493 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
DY655808 pooled .e 81 to 512 433 to 1       433/433
(100 %)
0 diff
(100 %id)
DY655807 pooled .e 121 to 555 1 to 435       435/435
(100 %)
0 diff
(100 %id)
AA461286   .e 485 to 976 1 to 489       489/489
(100 %)
6 diff
(98.8 %id)
BX109938   .e 486 to 1029 1 to 544   tiling clone,   544/544
(100 %)
2 diff
(99.7 %id)
R46311 breast .e 788 to 1174 390 to 1   tiling clone, Submitted on the opposite strand 390/396
(98 %)
3 diff
(99.3 %id)
AI126777 heart .e 873 to 1448 576 to 1       576/576
(100 %)
1 diff
(99.9 %id)
AA460977   .e 1016 to 1448 449 to 17   tiling clone, AAA   433/433
(100 %)
0 diff
(100 %id)
AA441990   .e 1037 to 1444 408 to 1     Submitted on the opposite strand 408/408
(100 %)
0 diff
(100 %id)
AI370640   .e 1205 to 1445 241 to 1       241/241
(100 %)
0 diff
(100 %id)
AW973816   .f 1 to 403 528 to 126 exact tiling clone, Submitted on the opposite strand 403/615
(65 %)
1 diff
(99.9 %id)
AA578467 Prostate, prostatic intraepithelial neoplasia - highgrade .f 257 to 403 169 to 23   tiling clone,   147/169
(86 %)
1 diff
(99.5 %id)
DA114762 cerebellum .g-u 1 to 593 2 to 594   tiling clone, capped   593/593
(100 %)
1 diff
(99.9 %id)
AA460421   .g-u 349 to 809 1 to 462   fully sequenced,   462/462
(100 %)
2 diff
(99.6 %id)
AA906212 pooled .g-u 404 to 871 472 to 5 exact tiling clone,   468/472
(99 %)
0 diff
(100 %id)
BF679019 Prostate .g-u 601 to 1206 1 to 601 L2V L58C     601/786
(76 %)
12 diff
(98.5 %id)
AI138603 uterus .g-u 688 to 1215 534 to 7   tiling clone,   528/534
(98 %)
0 diff
(100 %id)
BE465486 Kidney .g-u 694 to 1214 521 to 1   tiling clone,   521/521
(100 %)
0 diff
(100 %id)
BF591504 brain, glioblastoma (pooled) .g-u 705 to 1208 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
AI952962 pooled germ cell tumors .g-u 748 to 1214 467 to 1       467/467
(100 %)
1 diff
(99.8 %id)
AW296907   .g-u 754 to 1213 477 to 18   AAA   460/460
(100 %)
0 diff
(100 %id)
AI167598 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g-u 759 to 1208 450 to 1       450/450
(100 %)
0 diff
(100 %id)
AI089673 brain, glioblastoma (pooled) .g-u 776 to 1213 455 to 18   AAA   438/438
(100 %)
1 diff
(99.8 %id)
AA460422   .g-u 779 to 1218 440 to 1   fully sequenced,   440/440
(100 %)
4 diff
(99.1 %id)
AW026743 pooled germ cell tumors .g-u 787 to 1213 438 to 12   AAA   427/427
(100 %)
2 diff
(99.6 %id)
BG222350 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .g-u 807 to 1209 403 to 1       403/403
(100 %)
2 diff
(99.6 %id)
AI373778 Kidney .g-u 839 to 1213 375 to 1       375/375
(100 %)
0 diff
(100 %id)
AI074655 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g-u 943 to 1213 271 to 1       271/271
(100 %)
0 diff
(100 %id)
AW139237   .g-u 971 to 1213 261 to 18   AAA   244/244
(100 %)
4 diff
(98.4 %id)
AI424683 brain, glioblastoma (pooled) .g-u 990 to 1208 220 to 1       220/220
(100 %)
2 diff
(99.1 %id)
AA128301 uterus Gene SHISA6, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C