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Gene C15orf52TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
115 supporting clones for gene C15orf52 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_207380.2   .a 1 to 5325 2 to 5326 exact RefSeq, AAA   5326/5326
(100 %)
0 diff
(100 %id)
DA106198 cerebellum .a 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
DA109835 cerebellum .a 1 to 547 2 to 548   capped   547/548
(99 %)
1 diff
(99.9 %id)
DB223437 trachea .a 6 to 571 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA725583   .a 8 to 569 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA125654 cerebellum .a 12 to 580 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BX354923 Neuroblastoma Cot 25-normalized .a 18 to 1029 1 to 1003   tiling clone,   1003/1007
(99 %)
11 diff
(99.0 %id)
DA313172 hippocampus .a 29 to 583 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB291779 uterus .a 32 to 619 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA113135 cerebellum .a 39 to 607 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BF879892 lung_tumor .a 425 to 744 16 to 335       320/340
(94 %)
12 diff
(96.5 %id)
TI_1971557481   .a 1159 to 2327 10 to 1175   tiling clone,   1166/1234
(94 %)
25 diff
(98.0 %id)
TI_1971557475   .a 1310 to 2457 1147 to 15       1133/1203
(94 %)
0 diff
(100 %id)
AI751543 Bone, Hip .a 1580 to 2002 9 to 431       423/431
(98 %)
6 diff
(98.7 %id)
TI_1971557507   .a 1586 to 2651 1 to 1060       1060/1246
(85 %)
15 diff
(98.8 %id)
DA219859 brain .a 1626 to 2155 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
BX479476   .a 1727 to 2265 1 to 539       539/539
(100 %)
0 diff
(100 %id)
BX391563 Neuroblastoma Cot 25-normalized .a 1840 to 2750 912 to 1       912/913
(99 %)
0 diff
(100 %id)
TI_1971554725   .a 1931 to 2955 1076 to 58     Submitted on the opposite strand 1019/1264
(80 %)
0 diff
(100 %id)
AK124643 cerebellum .a 1986 to 5325 1 to 3337   tiling clone, available from FLJ,   3337/3337
(100 %)
6 diff
(99.9 %id)
DA113545 cerebellum .a 1987 to 2528 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BF927521 nervous_tumor .a 2059 to 2426 376 to 8     Submitted on the opposite strand 369/376
(98 %)
0 diff
(100 %id)
TI_1971557505   .a 2228 to 2955 12 to 737       726/1258
(57 %)
5 diff
(99.7 %id)
BG982859 colon_normal .a 2292 to 2738 28 to 471       444/472
(94 %)
8 diff
(98.4 %id)
BG979657 colon_normal .a 2324 to 2699 2 to 380       379/380
(99 %)
6 diff
(98.5 %id)
DA967370 stomach .a 2852 to 3316 2 to 467   capped   466/466
(100 %)
1 diff
(99.8 %id)
DB179516 kidney, tumor tissue .a 3159 to 3576 2 to 420   capped   419/419
(100 %)
1 diff
(99.8 %id)
DA821189 pericardium .a 3182 to 3753 6 to 577   tiling clone, capped   572/576
(99 %)
4 diff
(99.4 %id)
DB302885 amygdala .a 3212 to 3654 1 to 443     Submitted on the opposite strand 443/443
(100 %)
1 diff
(99.8 %id)
DA910279   .a 3212 to 3703 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
DA572602 whole embryo, mainly body .a 3382 to 4085 2 to 705   tiling clone, capped   704/704
(100 %)
2 diff
(99.8 %id)
CB146523 Liver .a 3575 to 4011 1 to 437       437/437
(100 %)
1 diff
(99.8 %id)
BX488617   .a 3800 to 4068 1 to 269       269/269
(100 %)
0 diff
(100 %id)
H28848 whole brain .a 3819 to 4186 1 to 368       368/368
(100 %)
4 diff
(99.0 %id)
BU188573 melanotic melanoma, skin .a 3835 to 4542 1 to 715   tiling clone,   715/901
(79 %)
8 diff
(99.2 %id)
BG478086 melanotic melanoma, skin .a 3850 to 4557 1 to 708   available from MGC,   708/713
(99 %)
10 diff
(98.6 %id)
BC015670 Skin, melanotic melanoma. .a 3851 to 5325 1 to 1472   available from MGC, AAA   1472/1472
(100 %)
4 diff
(99.8 %id)
BM712833 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3867 to 4376 1 to 511       511/511
(100 %)
4 diff
(99.3 %id)
BM716672 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3867 to 4614 1 to 747       747/747
(100 %)
3 diff
(99.6 %id)
BG034851 adenocarcinoma, cell line, Liver .a 3956 to 4787 1 to 837       837/1100
(76 %)
15 diff
(98.7 %id)
BQ717122 sympathetic trunk .a 3999 to 4757 1 to 770       770/881
(87 %)
38 diff
(95.7 %id)
BF338229 brain, glioblastoma with EGFR amplification .a 4034 to 4824 1 to 780       780/942
(82 %)
28 diff
(97.1 %id)
BF830152 head_normal .a 4102 to 4349 266 to 19     Submitted on the opposite strand 248/276
(89 %)
0 diff
(100 %id)
BQ690903 ductal carcinoma, cell line, Pancreas .a 4125 to 4942 1 to 820       820/889
(92 %)
5 diff
(99.5 %id)
BQ894659 ductal carcinoma, cell line, Pancreas .a 4125 to 4989 1 to 872   tiling clone,   872/880
(99 %)
10 diff
(98.9 %id)
BF736154 bladder_tumor .a 4134 to 4325 208 to 17     Submitted on the opposite strand 192/208
(92 %)
0 diff
(100 %id)
BX641759   .a 4227 to 4894 1 to 669       669/669
(100 %)
3 diff
(99.6 %id)
BE747537 adenocarcinoma cell line, ovary .a 4271 to 5163 7 to 894       888/974
(91 %)
24 diff
(97.6 %id)
BI196123 brain, neuroblastoma .a 4276 to 5064 1 to 787       787/788
(99 %)
3 diff
(99.7 %id)
BM797258 Ascites, stomach .a 4300 to 4518 1 to 219       219/219
(100 %)
0 diff
(100 %id)
BM693875 eye, lens .a 4315 to 4866 1 to 552   fully sequenced,   552/552
(100 %)
1 diff
(99.9 %id)
AA211229 muscle, skeletal muscle .a 4365 to 4564 1 to 199       199/199
(100 %)
1 diff
(99.5 %id)
BF689071 eye, normal pigmented retinal epithelium .a 4385 to 5276 878 to 3       876/1022
(85 %)
0 diff
(100 %id)
BM792659 Ascites, stomach .a 4414 to 5065 1 to 652       652/652
(100 %)
0 diff
(100 %id)
TI_149285243   .a 4432 to 5325 963 to 85   AAA   879/1153
(76 %)
24 diff
(98.0 %id)
BQ673040 epidermoid carcinoma, cell line, salivary gland .a 4457 to 5277 1 to 829       829/923
(89 %)
24 diff
(97.4 %id)
TI_154105190   .a 4625 to 5325 785 to 90   AAA   696/698
(99 %)
6 diff
(99.2 %id)
BE774322 uterus .a 4627 to 4829 229 to 25       205/229
(89 %)
10 diff
(95.7 %id)
CB110278 Liver .a 4651 to 5230 1 to 580       580/580
(100 %)
4 diff
(99.4 %id)
CB111276 Liver .a 4651 to 5273 1 to 623       623/623
(100 %)
3 diff
(99.6 %id)
CB853672 Human Lung Epithelial cells, lung .a 4660 to 5311 668 to 19   AAA   650/650
(100 %)
2 diff
(99.7 %id)
CA446467 Chondrosarcoma, Left Pubic Bone .a 4661 to 5325 680 to 19   AAA   662/662
(100 %)
4 diff
(99.4 %id)
BM984775 lung .a 4687 to 5325 656 to 19   AAA   638/638
(100 %)
2 diff
(99.7 %id)
BU618720 Cell Line, Chondrosarcoma .a 4687 to 5325 657 to 19   tiling clone, AAA   639/639
(100 %)
0 diff
(100 %id)
CA423451 cell lines, Chondrosarcoma .a 4688 to 5325 656 to 19   AAA   638/638
(100 %)
0 diff
(100 %id)
DB324363   .a 4764 to 5315 550 to 1       550/555
(99 %)
3 diff
(99.5 %id)
AI922821 adenocarcinoma, Pancreas .a 4771 to 5307 537 to 1       537/537
(100 %)
1 diff
(99.9 %id)
DB300043 cerebellum .a 4775 to 5325 549 to 1       549/556
(98 %)
17 diff
(97.0 %id)
DB334536 stomach .a 4787 to 5325 539 to 1       539/539
(100 %)
1 diff
(99.9 %id)
DB331404   .a 4795 to 5325 531 to 1       531/531
(100 %)
2 diff
(99.7 %id)
BQ310143 breast .a 4799 to 5184 424 to 39       386/428
(90 %)
0 diff
(100 %id)
AW170567 cervix, tumor .a 4818 to 5324 508 to 1       508/508
(100 %)
2 diff
(99.7 %id)
BF765308 colon_est .a 4824 to 5172 355 to 2     Submitted on the opposite strand 354/355
(99 %)
0 diff
(100 %id)
BQ323228 colon_est .a 4824 to 5104 286 to 1       286/286
(100 %)
15 diff
(94.8 %id)
BE879640 large cell carcinoma, undifferentiated, lung .a 4830 to 5321 1 to 490       490/490
(100 %)
2 diff
(99.6 %id)
AA494514 colon .a 4836 to 5326 492 to 3       490/492
(99 %)
0 diff
(100 %id)
BM670937 eye, lens .a 4836 to 5325 506 to 19   fully sequenced, AAA   488/488
(100 %)
2 diff
(99.6 %id)
AI815043 adenocarcinoma, Pancreas .a 4845 to 5325 493 to 16   AAA   478/478
(100 %)
6 diff
(98.8 %id)
AI751544 Bone, Hip .a 4851 to 5287 439 to 3       437/439
(99 %)
0 diff
(100 %id)
BE673226 Prostate .a 4853 to 5325 484 to 14   AAA   471/471
(100 %)
5 diff
(99.0 %id)
BX097947 adenocarcinoma, Pancreas .a 4858 to 5307 464 to 15   AAA   450/450
(100 %)
1 diff
(99.8 %id)
AJ708494 heart .a 4873 to 5256 1 to 384       384/384
(100 %)
2 diff
(99.5 %id)
BU738428 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4886 to 5322 457 to 21       437/457
(95 %)
0 diff
(100 %id)
H28718 whole brain .a 4889 to 5326 454 to 9       446/527
(84 %)
0 diff
(100 %id)
AI420757 Prostate .a 4890 to 5325 447 to 14   AAA   434/434
(100 %)
7 diff
(98.4 %id)
AI587576 adenocarcinoma, Pancreas .a 4900 to 5326 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
BE906428 epithelioid carcinoma, Pancreas .a 4907 to 5325 451 to 25   AAA Submitted on the opposite strand 670/802
(83 %)
35 diff
(95.7 %id)
AI143025 senescent fibroblast .a 4918 to 5302 398 to 14   AAA   385/385
(100 %)
14 diff
(96.4 %id)
F26397 pectoral muscle (after mastectomy) .a 4920 to 5206 1 to 287       287/287
(100 %)
3 diff
(99.0 %id)
DB359663 whole embryo, mainly body .a 4933 to 5325 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
F29408 pectoral muscle (after mastectomy) .a 4934 to 5215 1 to 282       282/282
(100 %)
0 diff
(100 %id)
AA291927 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4935 to 5325 390 to 1       390/390
(100 %)
3 diff
(99.3 %id)
W57617.
matches multiple genes
heart .a 4938 to 5326 399 to 7     also hits gene SSU72 393/403
(97 %)
0 diff
(100 %id)
AA939115 pooled .a 4944 to 5325 393 to 12   AAA   382/382
(100 %)
0 diff
(100 %id)
BE223099 brain, oligodendroglioma .a 4949 to 5325 393 to 17   AAA   377/377
(100 %)
0 diff
(100 %id)
AI587557 adenocarcinoma, Pancreas .a 4960 to 5326 366 to 1       366/366
(100 %)
2 diff
(99.5 %id)
AW183956 pooled .a 4971 to 5326 358 to 4   tiling clone,   355/358
(99 %)
0 diff
(100 %id)
BI059404 uterus_tumor .a 5010 to 5283 1 to 274       274/285
(96 %)
2 diff
(99.3 %id)
AI127566 uterus .a 5047 to 5326 366 to 88   AAA   279/341
(81 %)
0 diff
(100 %id)
AI565236 pooled .a 5059 to 5325 266 to 1       266/266
(100 %)
2 diff
(99.3 %id)
AA661632 normal prostate, Prostate .a 5073 to 5326 256 to 3       254/256
(99 %)
0 diff
(100 %id)
CR749408 endometrium carcinoma cell line .b 1 to 5020 1 to 5019 exact tiling clone, available from DKFZ, AAA   5019/5019
(100 %)
6 diff
(99.9 %id)
BC140897 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 1 to 2345 1 to 2345 exact tiling clone,   2345/2345
(100 %)
0 diff
(100 %id)
BC140902 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 1 to 2345 1 to 2345 exact     2345/2345
(100 %)
0 diff
(100 %id)
TI_1971554741   .c 1 to 1074 67 to 1141 G273W Q288S Q289R G290V P293S ...   Submitted on the opposite strand 1075/1145
(93 %)
33 diff
(97.2 %id)
TI_1971557795   .c 1 to 933 132 to 1061     Submitted on the opposite strand 930/1211
(76 %)
26 diff
(97.9 %id)
TI_1971557477   .c 1 to 865 865 to 3       863/1229
(70 %)
1 diff
(100.0 %id)
DB083844 testis .c 1 to 540 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
DB340999 testis .c 4164 to 4715 550 to 1   tiling clone,   550/550
(100 %)
2 diff
(99.7 %id)
DA334385 hippocampus .d 1 to 571 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DN831508 pooled .d 73 to 613 540 to 1     Submitted on the opposite strand 540/540
(100 %)
2 diff
(99.7 %id)
DN831507 pooled .d 113 to 650 1 to 538   tiling clone,   538/538
(100 %)
3 diff
(99.5 %id)
DA656085   .e 1 to 540 2 to 541 R34W tiling clone, capped   540/540
(100 %)
1 diff
(99.9 %id)
BX490063   .f 1 to 326 1 to 326 Q5X C33X A87X C90X R102X tiling clone,   326/326
(100 %)
0 diff
(100 %id)
BF913656 uterus_tumor .g-u 1 to 491 18 to 512 W10G D43A E46A E50D L51A ... tiling clone,   495/512
(96 %)
6 diff
(98.9 %id)
BF326326 amnion_normal .g-u 320 to 505 1 to 185   tiling clone,   185/192
(96 %)
7 diff
(96.4 %id)
AK125329   Gene C15orf52, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK126035 testis Gene C15orf52, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK126485 uterus Gene C15orf52, variant not shown       available from FLJ, This clone was ignored    
AW883883 ovary Gene C15orf52, variant not shown         Suspected internal deletion, this clone was ignored    
BX354922 Neuroblastoma Cot 25-normalized Gene C15orf52, variant not shown         Suspected internal deletion, this clone was ignored    
DB212894 trachea Gene C15orf52, variant not shown       capped      
DB277196 uterus Gene C15orf52, variant not shown       capped      
DB352246 uterus Gene C15orf52, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C