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Gene SMTNL2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
62 supporting clones for gene SMTNL2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57152260   .a 1 to 791 22 to 818       797/819
(97 %)
17 diff
(98.0 %id)
CN264864 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3 to 444 32 to 473   tiling clone,   442/473
(93 %)
6 diff
(98.8 %id)
BC110859 Colon, Kidney, Stomach, adult, whole pooled .a 6 to 2283 1 to 2278   tiling clone, AAA   2278/2278
(100 %)
2 diff
(100.0 %id)
NM_001114974.1   .a 6 to 2290 1 to 2285   RefSeq,   2285/2285
(100 %)
0 diff
(100 %id)
BI765270 pooled colon, kidney, stomach .a 7 to 791 1 to 791       791/792
(99 %)
14 diff
(98.3 %id)
NM_198501.2   .b 1 to 1936 2 to 1937 exact RefSeq,   1937/1937
(100 %)
0 diff
(100 %id)
DA822419 pericardium .b 1 to 567 2 to 568   tiling clone, capped   567/567
(100 %)
2 diff
(99.7 %id)
AK124452 cerebellum .b 18 to 1936 1 to 1919 A18T tiling clone, available from FLJ,   1919/1919
(100 %)
3 diff
(99.9 %id)
DA075116 cerebellum .b 19 to 570 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA899003 skeletal muscle .b 35 to 584 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
TI_1241108605   .b 97 to 1113 44 to 1054 A18T V246I A279G N280Q C281L ...     1011/1209
(83 %)
22 diff
(98.2 %id)
TI_1242414600   .b 97 to 1117 59 to 1067 A18T V246Y H247T S248P F249S ...   Submitted on the opposite strand 1009/1204
(83 %)
21 diff
(98.3 %id)
TI_1242418914   .b 97 to 1151 64 to 1115 A18T Q307S S308R L309C Y310T ...   Submitted on the opposite strand 1052/1173
(89 %)
13 diff
(98.9 %id)
BC105050 Brain, cerebellum, PCR rescued clones .b 99 to 1148 1 to 1050 A18T     1050/1050
(100 %)
1 diff
(100.0 %id)
BC112177 Brain, cerebellum, PCR rescued clones .b 99 to 1148 1 to 1050 A18T     1050/1050
(100 %)
1 diff
(100.0 %id)
TI_1242414598   .b 116 to 1151 1084 to 53 R2K K3D T4S S5N N6S ...   Submitted on the opposite strand 1032/1221
(84 %)
11 diff
(99.1 %id)
TI_1242418530   .b 121 to 1151 1088 to 58 N12M H14T Q15S P16R A18Q ...   Submitted on the opposite strand 1031/1170
(88 %)
6 diff
(99.5 %id)
BX500818 Liver .b 180 to 743 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
TI_1242414596   .b 209 to 1151 992 to 51   tiling clone, Submitted on the opposite strand 942/1216
(77 %)
7 diff
(99.5 %id)
BM923710 pooled colon, kidney, stomach .b 425 to 1235 9 to 828       820/1155
(70 %)
26 diff
(97.8 %id)
CR741691 lung .b 476 to 904 1 to 430       430/430
(100 %)
2 diff
(99.6 %id)
TI_1242416170   .b 701 to 1151 9 to 458       450/603
(74 %)
7 diff
(98.9 %id)
BM722819 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 702 to 1407 1 to 706       706/706
(100 %)
0 diff
(100 %id)
TI_1241111703   .b 710 to 1148 18 to 456       439/484
(90 %)
10 diff
(98.0 %id)
F00312 leg muscle, skeletal muscle .b 810 to 1085 1 to 275       275/275
(100 %)
3 diff
(99.0 %id)
TI_1242416868   .b 811 to 1151 6 to 347       342/519
(65 %)
7 diff
(98.7 %id)
AA247490   .b 945 to 1152 1 to 204       204/204
(100 %)
9 diff
(95.6 %id)
F31427 pectoral muscle (after mastectomy) .b 988 to 1275 1 to 288       288/288
(100 %)
0 diff
(100 %id)
AA383663 testis .b 992 to 1189 1 to 199       199/199
(100 %)
5 diff
(97.5 %id)
F22045 pectoral muscle (after mastectomy) .b 1024 to 1396 1 to 374       374/374
(100 %)
2 diff
(99.5 %id)
TI_151724562   .b 1157 to 1915 822 to 67       756/1048
(72 %)
0 diff
(100 %id)
BQ016479 lung, Metastatic Chondrosarcoma .b 1352 to 1929 597 to 19   AAA   579/589
(98 %)
2 diff
(99.7 %id)
AI193973 lung .b 1385 to 1931 549 to 2       548/549
(99 %)
0 diff
(100 %id)
AI765755 2 pooled tumors (clear cell type), Kidney .b 1427 to 1928 516 to 15   AAA   502/502
(100 %)
6 diff
(98.9 %id)
AI767695 Kidney .b 1471 to 1931 464 to 3       462/464
(99 %)
0 diff
(100 %id)
DB557882 hypothalamus .b 1496 to 1936 1 to 440     Submitted on the opposite strand 440/440
(100 %)
4 diff
(99.1 %id)
F30793 pectoral muscle (after mastectomy) .b 1525 to 1898 1 to 374       374/374
(100 %)
0 diff
(100 %id)
F30803 pectoral muscle (after mastectomy) .b 1525 to 1819 1 to 295       295/295
(100 %)
0 diff
(100 %id)
AJ572389 pectoral muscle (after mastectomy) .b 1533 to 1934 12 to 413       402/424
(94 %)
6 diff
(98.6 %id)
AW316561 brain, three pooled meningiomas .b 1533 to 1931 399 to 1       399/399
(100 %)
0 diff
(100 %id)
BF940647 sciatic nerve .b 1570 to 1936 369 to 3   tiling clone,   367/369
(99 %)
0 diff
(100 %id)
BE501522 Kidney .b 1577 to 1931 359 to 5       355/359
(98 %)
0 diff
(100 %id)
AJ573156 pectoral muscle (after mastectomy) .b 1579 to 1929 8 to 358   AAA   351/358
(98 %)
6 diff
(98.4 %id)
AA917052 pooled .b 1581 to 1888 308 to 1       308/308
(100 %)
0 diff
(100 %id)
F29354 pectoral muscle (after mastectomy) .b 1589 to 1886 1 to 298       298/298
(100 %)
0 diff
(100 %id)
F35794 pectoral muscle (after mastectomy) .b 1599 to 1854 1 to 256       256/256
(100 %)
1 diff
(99.7 %id)
AJ346691 pectoral muscle (after mastectomy) .b 1603 to 1926 1 to 325       325/325
(100 %)
1 diff
(99.7 %id)
Z25264 leg muscle, skeletal muscle .b 1609 to 1929 321 to 1       321/321
(100 %)
0 diff
(100 %id)
AW139268   .b 1649 to 1929 298 to 18   AAA   281/281
(100 %)
0 diff
(100 %id)
AI382357   .b 1714 to 1929 249 to 34   AAA   216/216
(100 %)
4 diff
(98.2 %id)
BM977185 lung, Primary Lung Epithelial Cells .b 1785 to 2387 16 to 619   tiling clone, AAA Submitted on the opposite strand 604/626
(96 %)
2 diff
(99.7 %id)
AJ346469 pectoral muscle (after mastectomy) .b 1787 to 1935 1 to 150       150/164
(91 %)
3 diff
(98.2 %id)
AJ346702 pectoral muscle (after mastectomy) .b 1795 to 1931 1 to 136       136/142
(95 %)
3 diff
(97.9 %id)
W73082 heart .b 1905 to 2550 1 to 635   tiling clone, fully sequenced,   635/635
(100 %)
13 diff
(98.0 %id)
W79213 heart .b 1905 to 2331 1 to 427       427/427
(100 %)
1 diff
(99.8 %id)
W73042 heart .b 2520 to 2977 452 to 1   tiling clone, fully sequenced,   452/452
(100 %)
7 diff
(98.5 %id)
W78169 heart .b 2542 to 2973 432 to 1       432/433
(99 %)
4 diff
(99.1 %id)
CD687977 normal nasopharynx .b 2935 to 3482 34 to 581   tiling clone,   548/581
(94 %)
6 diff
(99.0 %id)
BI917626 brain .c 1 to 688 5 to 704 Q5H R6A D7G N8Q Q9P ... tiling clone,   698/860
(81 %)
24 diff
(97.3 %id)
TI_57243788   .c 1 to 688 26 to 725 Q5H R6A D7G N8Q Q9P ...     698/881
(79 %)
24 diff
(97.3 %id)
CV337212 head_neck .c 217 to 503 1 to 287       287/287
(100 %)
8 diff
(97.3 %id)
CV337205 head_neck .c 218 to 559 1 to 342   tiling clone,   342/342
(100 %)
6 diff
(98.3 %id)
CN294728 embryonic stem cells, DMSO-treated H9 cellline .d 1 to 357 1 to 357 exact tiling clone,   357/357
(100 %)
0 diff
(100 %id)
AJ571818 pectoral muscle (after mastectomy) Gene SMTNL2, variant not shown       AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C