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Gene CNTD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
91 supporting clones for gene CNTD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI460120 testis .a 1 to 613 1 to 606   tiling clone,   608/606
(100 %)
22 diff
(96.4 %id)
BC026187 testis .a 6 to 1383 1 to 1378 exact available from MGC, AAA   1378/1378
(100 %)
0 diff
(100 %id)
NM_173478.2   .a 50 to 3325 1 to 3276 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 3276/3276
(100 %)
0 diff
(100 %id)
DB083530 testis .a 51 to 594 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB041755 testis .a 79 to 659 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DB042099 testis .a 102 to 684 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB068256 testis .a 105 to 663 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
AK097456 testis .a 134 to 2374 1 to 2241 P4S tiling clone, available from FLJ,   2241/2241
(100 %)
1 diff
(100.0 %id)
DB029538 testis .a 135 to 751 2 to 618   capped   617/617
(100 %)
1 diff
(99.9 %id)
CB104986 stomach .a 149 to 511 1 to 363       363/363
(100 %)
0 diff
(100 %id)
AA382329 testis .a 152 to 401 1 to 252       252/259
(97 %)
3 diff
(98.9 %id)
TI_1948091495   .a 276 to 1271 126 to 1133   fully sequenced,   1008/1133
(88 %)
47 diff
(95.9 %id)
TI_1948091621   .a 276 to 1108 128 to 965       838/1305
(64 %)
25 diff
(98.1 %id)
CV024547 mixed .a 282 to 901 1 to 615       615/615
(100 %)
7 diff
(98.9 %id)
TI_1948091741   .a 282 to 949 136 to 804   fully sequenced,   669/804
(83 %)
6 diff
(99.3 %id)
TI_1948091381   .a 327 to 707 179 to 559       317/1318
(24 %)
13 diff
(99.1 %id)
DB053720 testis .a 391 to 951 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
T27180   .a 451 to 698 1 to 249       247/249
(99 %)
0 diff
(100 %id)
BU101610   .a 531 to 782 1 to 252       252/252
(100 %)
0 diff
(100 %id)
CF272607   .a 558 to 896 1 to 340       340/340
(100 %)
7 diff
(98.0 %id)
DN831093 pooled .a 724 to 966 237 to 1     Submitted on the opposite strand 237/237
(100 %)
6 diff
(97.5 %id)
BX096618   .a 743 to 1208 1 to 466       466/466
(100 %)
0 diff
(100 %id)
TI_1948091382   .a 754 to 1273 644 to 123       522/1422
(36 %)
34 diff
(97.7 %id)
FN139864 breast carcinoma .a 756 to 855 100 to 1     Submitted on the opposite strand 100/103
(97 %)
0 diff
(100 %id)
AA868514   .a 773 to 1318 548 to 4       545/548
(99 %)
1 diff
(99.9 %id)
AW173028 pooled .a 840 to 1318 483 to 5       479/483
(99 %)
0 diff
(100 %id)
AI150202   .a 850 to 1318 471 to 3       469/471
(99 %)
0 diff
(100 %id)
DB519030 testis .a 859 to 1318 11 to 470     Submitted on the opposite strand 460/474
(97 %)
7 diff
(98.6 %id)
AI138317   .a 885 to 1317 443 to 11   AAA   433/433
(100 %)
1 diff
(99.8 %id)
AA757398 pooled .a 886 to 1252 367 to 1       367/367
(100 %)
1 diff
(99.8 %id)
AI190582   .a 887 to 1317 443 to 13   AAA   431/431
(100 %)
1 diff
(99.8 %id)
AW136561   .a 914 to 1317 421 to 18   AAA   404/404
(100 %)
1 diff
(99.8 %id)
TI_1948091742   .a 919 to 1273 488 to 133   fully sequenced,   356/488
(72 %)
0 diff
(100 %id)
AW136558   .a 924 to 1317 411 to 18   AAA   394/394
(100 %)
1 diff
(99.8 %id)
AW593359 pooled .a 966 to 1318 356 to 4       353/356
(99 %)
1 diff
(99.8 %id)
TI_1948091496   .a 976 to 1273 426 to 129   fully sequenced,   298/426
(69 %)
0 diff
(100 %id)
U17909 Fibroblast, liver cell line .a 1669 to 1991 1 to 324       324/333
(97 %)
3 diff
(99.1 %id)
DB336900 testis .a 1809 to 2374 569 to 1       569/570
(99 %)
3 diff
(99.5 %id)
AA837138 germinal center B cell .a 1810 to 2194 1 to 385       385/385
(100 %)
5 diff
(98.8 %id)
BQ188032 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1871 to 2304 23 to 456   fully sequenced,   434/456
(95 %)
6 diff
(98.7 %id)
FN161439 breast carcinoma .a 1872 to 1942 1 to 71       71/71
(100 %)
1 diff
(98.6 %id)
DB543521.
matches multiple genes
hippocampus .a 1873 to 2342 470 to 1     also hits gene BECN1 470/470
(100 %)
0 diff
(100 %id)
AA480509   .a 1873 to 2118 1 to 246       246/246
(100 %)
0 diff
(100 %id)
DB572278.
matches multiple genes
hypothalamus .a 1875 to 2362 488 to 1     also hits gene BECN1 488/489
(99 %)
0 diff
(100 %id)
BM145341 leukopheresis .a 1875 to 2415 18 to 559       542/559
(96 %)
6 diff
(99.0 %id)
BM145407 leukopheresis .a 1875 to 2407 18 to 551       534/551
(96 %)
6 diff
(99.0 %id)
EC444566 Prostate .a 1876 to 1966 1 to 87       87/89
(97 %)
5 diff
(94.4 %id)
TI_151809280   .a 1876 to 2468 107 to 699       593/962
(61 %)
9 diff
(99.1 %id)
D20904   .a 1877 to 2030 154 to 1       154/154
(100 %)
0 diff
(100 %id)
DB518094.
matches multiple genes
testis .a 1880 to 2306 427 to 1     also hits gene BECN1 427/427
(100 %)
0 diff
(100 %id)
DB522235.
matches multiple genes
testis .a 1880 to 2344 465 to 1     also hits gene BECN1 465/465
(100 %)
0 diff
(100 %id)
DB522726.
matches multiple genes
testis .a 1880 to 2342 463 to 1     also hits gene BECN1 463/463
(100 %)
0 diff
(100 %id)
U46239 liver cell line, pancreatic cancer .a 1880 to 2088 1 to 209       209/211
(99 %)
4 diff
(98.2 %id)
BF508082   .a 1882 to 2208 340 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 327/337
(97 %)
0 diff
(100 %id)
AA634378   .a 1895 to 2208 314 to 1       314/314
(100 %)
0 diff
(100 %id)
BG209555   .a 1909 to 2545 33 to 671       639/889
(71 %)
34 diff
(96.2 %id)
FN141938 breast carcinoma .a 1909 to 2007 1 to 104       104/104
(100 %)
6 diff
(94.3 %id)
BE671177 carcinoid, lung .a 1916 to 2207 292 to 1       292/292
(100 %)
0 diff
(100 %id)
BF195306 carcinoid, lung .a 1916 to 2207 292 to 1       292/292
(100 %)
0 diff
(100 %id)
BF833049 head_neck .a 1919 to 2287 1 to 370       370/370
(100 %)
7 diff
(98.2 %id)
AW373778 breast .a 1934 to 2581 14 to 654   tiling clone,   641/725
(88 %)
6 diff
(99.2 %id)
AI240077 pooled .a 1999 to 2374 396 to 21   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 376/376
(100 %)
2 diff
(99.5 %id)
AW614691 carcinoid, lung .a 2026 to 2512 488 to 1       488/488
(100 %)
2 diff
(99.6 %id)
GD146723   .a 2037 to 2204 1 to 168   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 168/168
(100 %)
2 diff
(98.9 %id)
BE174269 head_neck .a 2073 to 2349 1 to 278       278/291
(95 %)
3 diff
(99.0 %id)
FN174576 breast carcinoma .a 2106 to 2205 1 to 102       102/104
(98 %)
3 diff
(97.2 %id)
AW063902 thymus .a 2182 to 2368 1 to 188       188/188
(100 %)
2 diff
(99.0 %id)
AW578736 colon .a 2185 to 2620 16 to 454       439/466
(94 %)
24 diff
(94.9 %id)
BF379911 uterus_tumor .a 2231 to 2560 1 to 330       330/330
(100 %)
7 diff
(97.9 %id)
FN094861 breast carcinoma .a 2254 to 2351 1 to 98       98/102
(96 %)
2 diff
(98.1 %id)
FN047161 breast carcinoma .a 2271 to 2375 1 to 105       105/105
(100 %)
0 diff
(100 %id)
BQ185208 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2274 to 2497 224 to 1   fully sequenced,   224/224
(100 %)
2 diff
(99.2 %id)
AA838536 epithelium (cell line), Prostate .a 2390 to 2670 1 to 279   tiling clone, AAA   279/287
(97 %)
3 diff
(99.0 %id)
T27179   .a 2864 to 2913 1 to 51   tiling clone,   51/51
(100 %)
1 diff
(98.1 %id)
BF378500 uterus .a 2958 to 3119 1 to 163   tiling clone,   163/163
(100 %)
6 diff
(96.4 %id)
CV312515 uterus .a 2958 to 3119 1 to 163       163/163
(100 %)
6 diff
(96.4 %id)
DB453567 testis .b 1 to 506 1 to 504       506/504
(100 %)
7 diff
(98.7 %id)
DB457915.
matches multiple genes
testis .b 1 to 497 1 to 497   tiling clone, also hits gene sterpla 497/497
(100 %)
0 diff
(100 %id)
DB047934 testis .b 10 to 555 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
AI688101 colon .b 432 to 934 517 to 15   tiling clone, AAA   503/503
(100 %)
5 diff
(99.1 %id)
AI688034 colon .b 438 to 934 511 to 15   tiling clone, AAA   497/497
(100 %)
6 diff
(98.8 %id)
DC397820 testis .c 1 to 548 3 to 550   tiling clone,   550/550
(100 %)
1 diff
(99.9 %id)
AK302094 testis .c 5 to 1307 8 to 1310 exact tiling clone,   1303/1303
(100 %)
2 diff
(99.9 %id)
DC397530 testis .c 5 to 553 8 to 556       549/549
(100 %)
2 diff
(99.7 %id)
DC398674 testis .c 33 to 533 53 to 553       501/553
(90 %)
6 diff
(99.0 %id)
DC403972 testis .d 1 to 541 1 to 541   tiling clone,   541/541
(100 %)
0 diff
(100 %id)
DB446514.
matches multiple genes
testis .d 31 to 474 1 to 444     also hits gene BECN1 444/444
(100 %)
3 diff
(99.4 %id)
BI828693 brain, medulla .d 62 to 867 1 to 813 K50Q L51T S52F F53L R54P ... tiling clone,   813/875
(92 %)
16 diff
(98.2 %id)
TI_57172415   .d 62 to 867 31 to 843 K50Q L51T S52F F53L R54P ...     813/905
(89 %)
21 diff
(97.7 %id)
DC398934 testis .d 72 to 638 1 to 567       567/567
(100 %)
0 diff
(100 %id)
AL833052 stomach .e 1 to 2656 1 to 2656 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2656/2656
(100 %)
0 diff
(100 %id)
BY799433 eye .f-u 1 to 592 1 to 592 exact tiling clone,   592/592
(100 %)
0 diff
(100 %id)
AW998796 breast_normal .f-u 244 to 490 15 to 260       246/274
(89 %)
11 diff
(96.0 %id)
DC395935 testis .g 1 to 563 1 to 563 exact tiling clone,   565/565
(100 %)
0 diff
(100 %id)
U17555   .h-u 1 to 477 481 to 1 N2X A15C Q16S I17D I18N ... tiling clone,   481/481
(100 %)
12 diff
(97.6 %id)
DB550599.
matches multiple genes
hippocampus Gene CNTD1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene BECN1    
DB550599.
matches multiple genes
hippocampus Gene BECN1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene BECN1    
DB481772.
matches multiple genes
hippocampus Gene CNTD1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene BECN1    
DB481772.
matches multiple genes
hippocampus Gene BECN1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene BECN1    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C