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Gene PATL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
274 supporting clones for gene PATL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA249165   .a 3459 to 3637 1 to 179       179/179
(100 %)
1 diff
(99.5 %id)
AA359612 lung .a 2242 to 2593 1 to 353       353/353
(100 %)
1 diff
(99.8 %id)
AA368630 placenta .a 2084 to 2321 1 to 237       237/237
(100 %)
1 diff
(99.6 %id)
AA377226 small intestine .a 2617 to 2898 1 to 283       283/283
(100 %)
2 diff
(99.3 %id)
AB065087   .a 2103 to 4126 1 to 2023   AAA   2023/2023
(100 %)
2 diff
(100.0 %id)
AI207527 Liver .e-u 1 to 580 577 to 1 exact tiling clone,   577/577
(100 %)
6 diff
(99.0 %id)
AJ708047 heart .a 1132 to 1663 21 to 552       532/552
(96 %)
6 diff
(99.0 %id)
AK094193   .a 491 to 4126 1 to 3636   available from FLJ,   3636/3636
(100 %)
0 diff
(100 %id)
AK127649 Liver .a 1560 to 4126 1 to 2567   available from FLJ,   2567/2567
(100 %)
2 diff
(100.0 %id)
AL831992 human skeletal muscle .a 61 to 4126 1 to 4066 K735R tiling clone, available from DKFZ, AAA   4066/4066
(100 %)
6 diff
(99.9 %id)
DA033238   .a 492 to 1059 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB295836   .a 3585 to 4126 543 to 1       543/543
(100 %)
1 diff
(99.9 %id)
AW369665 breast .a 1740 to 2305 1 to 564       564/564
(100 %)
8 diff
(98.6 %id)
AW389533 stomach .a 2517 to 3071 1 to 554       554/554
(100 %)
8 diff
(98.6 %id)
AW754180 colon .a 158 to 528 371 to 1       371/372
(99 %)
14 diff
(96.3 %id)
AW880873 ovary .a 564 to 1129 565 to 2       564/565
(99 %)
0 diff
(100 %id)
AW881139 ovary .a 266 to 689 1 to 425       425/425
(100 %)
3 diff
(99.3 %id)
AW947402 lung_tumor .a 3478 to 3933 455 to 1     Submitted on the opposite strand 455/455
(100 %)
3 diff
(99.4 %id)
AW956344   .a 2618 to 3304 1 to 687       687/687
(100 %)
11 diff
(98.4 %id)
AW962603   .a 2084 to 2456 1 to 373       373/504
(74 %)
1 diff
(99.9 %id)
AW976941   .a 3943 to 4126 184 to 1     Submitted on the opposite strand 184/304
(60 %)
8 diff
(97.4 %id)
AW995271 breast_normal .a 3183 to 3739 557 to 1     Submitted on the opposite strand 557/557
(100 %)
9 diff
(98.4 %id)
AX810689   .a 1786 to 4131 1 to 2346       2346/2350
(99 %)
4 diff
(99.9 %id)
BC065264 Uterus, leiomyosarcoma .a 508 to 4126 1 to 3619   available from MGC, AAA   3619/3619
(100 %)
0 diff
(100 %id)
BC109038 PCR rescued clones .a 547 to 3770 1 to 3224       3224/3224
(100 %)
0 diff
(100 %id)
BC109039 PCR rescued clones .a 547 to 3770 1 to 3224       3224/3224
(100 %)
0 diff
(100 %id)
BE061072 breast .a 1731 to 1915 1 to 187       187/187
(100 %)
16 diff
(91.5 %id)
BE090367 breast .a 2926 to 3323 398 to 1     Submitted on the opposite strand 398/398
(100 %)
4 diff
(99.0 %id)
BE150853 head_neck .c 1 to 496 502 to 9 Q104* tiling clone, Submitted on the opposite strand 494/505
(97 %)
2 diff
(99.7 %id)
BE150885 head_neck .a 1807 to 2275 498 to 32     Submitted on the opposite strand 467/509
(91 %)
5 diff
(99.1 %id)
BE151239 head_neck .a 1806 to 2285 521 to 42     Submitted on the opposite strand 480/524
(91 %)
3 diff
(99.5 %id)
BE700853 nervous_normal .a 1323 to 1757 1 to 433       433/433
(100 %)
1 diff
(99.8 %id)
BE700858 nervous_normal .a 1395 to 1816 426 to 8       419/426
(98 %)
1 diff
(99.8 %id)
BE700859 nervous_normal .a 1412 to 1816 416 to 13       404/416
(97 %)
0 diff
(100 %id)
BE700888 nervous_normal .a 1461 to 1816 375 to 19       357/375
(95 %)
1 diff
(99.8 %id)
BE700889 nervous_normal .a 1328 to 1817 499 to 11       489/499
(97 %)
0 diff
(100 %id)
BE700894 nervous_normal .a 1384 to 1816 433 to 1       433/433
(100 %)
3 diff
(99.4 %id)
BE700921 nervous_normal .a 1432 to 1817 387 to 3       385/387
(99 %)
0 diff
(100 %id)
BE700925 nervous_normal .a 1413 to 1791 379 to 1       379/379
(100 %)
3 diff
(99.3 %id)
BE700926 nervous_normal .a 1415 to 1816 407 to 6       402/407
(98 %)
0 diff
(100 %id)
BE717229 head_neck .a 3655 to 3871 223 to 7       217/227
(95 %)
0 diff
(100 %id)
BE772085 prostate_tumor .a 1306 to 1713 1 to 410       410/410
(100 %)
18 diff
(95.7 %id)
BE818893 breast_normal .a 1506 to 1815 321 to 10       312/321
(97 %)
3 diff
(99.1 %id)
BE818894 breast_normal .a 1517 to 1817 304 to 2       303/304
(99 %)
3 diff
(99.1 %id)
BE818902 breast_normal .a 1386 to 1815 439 to 12       428/439
(97 %)
6 diff
(98.7 %id)
BE818903 breast_normal .a 1497 to 1815 334 to 16       319/334
(95 %)
4 diff
(98.9 %id)
BE818906 breast_normal .a 1535 to 1815 288 to 10       279/288
(96 %)
7 diff
(97.6 %id)
BE818908 breast_normal .a 1395 to 1811 427 to 6       420/427
(98 %)
9 diff
(97.9 %id)
BE818909 breast_normal .a 1454 to 1816 363 to 3       361/363
(99 %)
10 diff
(97.3 %id)
BE818931 breast_normal .a 1359 to 1816 460 to 6       455/460
(98 %)
3 diff
(99.4 %id)
BE818938 breast_normal .a 1366 to 1808 439 to 1       439/439
(100 %)
6 diff
(98.7 %id)
BE818939 breast_normal .a 1507 to 1815 320 to 14       307/320
(95 %)
4 diff
(98.8 %id)
BE818941 breast_normal .a 1381 to 1809 428 to 1       428/428
(100 %)
3 diff
(99.3 %id)
BE818942 breast_normal .a 1445 to 1818 377 to 6       372/381
(97 %)
4 diff
(99.0 %id)
BE818961 breast_normal .a 1316 to 1668 8 to 357       350/357
(98 %)
7 diff
(98.1 %id)
BE818963 breast_normal .a 1495 to 1817 337 to 14       323/337
(95 %)
9 diff
(97.4 %id)
BE818967 breast_normal .a 1399 to 1815 430 to 16       415/430
(96 %)
4 diff
(99.1 %id)
BE818968 breast_normal .a 1424 to 1815 413 to 20       394/413
(95 %)
3 diff
(99.3 %id)
BE818969 breast_normal .a 1401 to 1817 419 to 3       372/419
(88 %)
6 diff
(98.6 %id)
BE818971 breast_normal .a 1409 to 1812 414 to 11       404/414
(97 %)
3 diff
(99.3 %id)
BE818975 breast_normal .a 1445 to 1815 384 to 15       370/384
(96 %)
2 diff
(99.5 %id)
BE818979 breast_normal .a 1418 to 1809 397 to 6       392/397
(98 %)
6 diff
(98.5 %id)
BE827584 lung_tumor .a 1621 to 2032 62 to 471       410/471
(87 %)
6 diff
(98.8 %id)
BE830922 marrow .a 1390 to 1817 431 to 2       428/431
(99 %)
1 diff
(99.8 %id)
BE830924 marrow .a 1410 to 1819 416 to 6       411/416
(98 %)
1 diff
(99.8 %id)
BE830925 marrow .a 1400 to 1726 349 to 20       330/349
(94 %)
2 diff
(99.5 %id)
BE830926 marrow .a 1394 to 1728 355 to 22       334/355
(94 %)
0 diff
(100 %id)
BF170892 blood .a 1005 to 1114 1 to 113       113/117
(96 %)
6 diff
(94.9 %id)
BF740780 bocio_tumor .a 1308 to 1733 16 to 441       426/441
(96 %)
7 diff
(98.5 %id)
BF756593 colon .a 930 to 1243 319 to 5     Submitted on the opposite strand 315/319
(98 %)
0 diff
(100 %id)
BF804739 colon_ins .a 3319 to 3678 377 to 18     Submitted on the opposite strand 360/377
(95 %)
0 diff
(100 %id)
BF805364 colon_ins .a 3496 to 3902 405 to 1     Submitted on the opposite strand 405/405
(100 %)
4 diff
(99.1 %id)
BF821858 kidney_tumor .a 1226 to 1478 1 to 252       252/252
(100 %)
3 diff
(98.9 %id)
BF852050 lung_normal .a 3597 to 3953 359 to 2     Submitted on the opposite strand 358/359
(99 %)
11 diff
(97.0 %id)
BF852350 lung_normal .a 3445 to 3973 530 to 3     Submitted on the opposite strand 528/530
(99 %)
0 diff
(100 %id)
BF996091 placenta_normal .a 3065 to 3373 306 to 1       306/306
(100 %)
8 diff
(97.4 %id)
BF999990 placenta_normal .a 3010 to 3379 390 to 23       368/390
(94 %)
0 diff
(100 %id)
BG314917   .a 1917 to 2147 1 to 232       232/232
(100 %)
1 diff
(99.6 %id)
BG315000   .a 2227 to 2453 227 to 1       227/227
(100 %)
8 diff
(96.5 %id)
BI002580 head_normal .a 3365 to 3514 152 to 4       149/152
(98 %)
8 diff
(94.8 %id)
BI021832 marrow .a 2101 to 2626 13 to 542       530/542
(97 %)
16 diff
(97.1 %id)
BI030490 marrow .a 2347 to 2693 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
BQ337222 marrow .a 974 to 1175 1 to 205       205/230
(89 %)
9 diff
(96.1 %id)
BQ347205 nervous_tumor .a 941 to 1426 508 to 23       486/508
(95 %)
0 diff
(100 %id)
DA190363 amygdala .a 62 to 662 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DA268722 caudate nucleus .a 254 to 825 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA298749 hippocampus .a 1316 to 1893 2 to 580   capped   579/579
(100 %)
4 diff
(99.4 %id)
DA310401 hippocampus .a 39 to 609 2 to 572   capped   571/572
(99 %)
1 diff
(99.9 %id)
DC335069 hippocampus .a 24 to 613 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
DA384807 thalamus .a 1457 to 2051 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
C21540   .a 3824 to 4032 1 to 209       209/211
(99 %)
4 diff
(98.2 %id)
CN285424 embryonic stem cells, cell lines H1, H7, andH9 .a 2830 to 3422 1 to 592       592/592
(100 %)
3 diff
(99.5 %id)
CN420884 embryonic stem cells, cell lines H1, H7, andH9 .a 40 to 555 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
CN420885 embryonic stem cells, DMSO-treated H9 cellline .a 29 to 202 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
CN420886 embryonic stem cells, DMSO-treated H9 cellline .a 1084 to 1878 1 to 797       797/801
(99 %)
6 diff
(99.3 %id)
CR610274 T cells (Jurkat cell line) Cot10-normalized .a 3511 to 4131 1 to 621       621/621
(100 %)
0 diff
(100 %id)
BX410092 T cells (Jurkat cell line) .a 816 to 1715 1 to 897       897/897
(100 %)
10 diff
(98.9 %id)
BX435972 T cells (Jurkat cell line) .a 3349 to 4124 781 to 1       781/882
(88 %)
37 diff
(95.9 %id)
BX462519 T cells (Jurkat cell line) .a 43 to 1061 1 to 1013       1013/1013
(100 %)
24 diff
(97.7 %id)
BX383704   .a 3511 to 4131 1 to 622       622/622
(100 %)
6 diff
(99.1 %id)
CV351004 colon .b 1144 to 1725 615 to 38     Submitted on the opposite strand 578/683
(84 %)
0 diff
(100 %id)
BX491397   .a 3453 to 4126 692 to 19   AAA   674/674
(100 %)
0 diff
(100 %id)
DN916141   .b 691 to 1237 1 to 547   tiling clone,   547/547
(100 %)
2 diff
(99.7 %id)
DN916142   .b 1369 to 1977 601 to 1   tiling clone,   601/607
(99 %)
8 diff
(98.7 %id)
EH316254.
matches multiple genes
  .a 388 to 450 1 to 64   tiling clone, also hits gene sherswee 64/65
(98 %)
5 diff
(92.4 %id)
FN061706 breast carcinoma .a 3330 to 3419 1 to 87       87/88
(98 %)
3 diff
(96.6 %id)
FN066882 breast carcinoma .a 2155 to 2218 1 to 65       65/65
(100 %)
1 diff
(98.5 %id)
FN079685 breast carcinoma .a 3868 to 3943 76 to 1     Submitted on the opposite strand 76/77
(98 %)
0 diff
(100 %id)
FN081751 breast carcinoma .a 3625 to 3685 1 to 61       61/64
(95 %)
1 diff
(98.5 %id)
FN153910 breast carcinoma .b 1929 to 1995 65 to 1   tiling clone, Submitted on the opposite strand 65/66
(98 %)
2 diff
(97.0 %id)
GD142803   .a 2938 to 3132 1 to 195       195/198
(98 %)
2 diff
(99.0 %id)
GD158766   .a 3960 to 4126 1 to 167   AAA   167/167
(100 %)
6 diff
(96.5 %id)
GD158860   .a 3958 to 4126 1 to 169   AAA   169/169
(100 %)
8 diff
(95.3 %id)
AV693943 hepatocellular carcinoma .a 3225 to 3357 256 to 386       350/386
(90 %)
33 diff
(91.5 %id)
DB458343 testis .a -8 to 336 1 to 345   tiling clone,   345/345
(100 %)
3 diff
(99.2 %id)
DA567383   .a 25 to 541 2 to 518   capped   517/517
(100 %)
2 diff
(99.7 %id)
R60069 whole brain .a 3659 to 4131 487 to 5       483/511
(94 %)
0 diff
(100 %id)
R60133 whole brain .a 2740 to 3214 1 to 485       485/488
(99 %)
15 diff
(97.0 %id)
T83665 liver and spleen .a 2638 to 3144 512 to 1       512/512
(100 %)
19 diff
(96.3 %id)
H94353 placenta .a 3532 to 3846 1 to 320       320/322
(99 %)
13 diff
(96.0 %id)
N35083 melanocyte .a 2750 to 3128 383 to 1       383/427
(89 %)
2 diff
(99.6 %id)
N43823 melanocyte .a 1021 to 1368 1 to 349       349/349
(100 %)
1 diff
(99.8 %id)
N33854 melanocyte .a 2609 to 3128 524 to 1       524/526
(99 %)
5 diff
(99.1 %id)
N67562 cochlea, ear .a 3734 to 4124 394 to 1       394/394
(100 %)
5 diff
(98.8 %id)
AA707195 liver and spleen .a 3599 to 4047 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AA179756   .a 316 to 693 1 to 378       378/379
(99 %)
1 diff
(99.8 %id)
AA180333   .a 3700 to 4125 427 to 1       427/428
(99 %)
1 diff
(99.8 %id)
AA227714 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3077 to 3468 1 to 390       390/390
(100 %)
2 diff
(99.5 %id)
AA227960 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3727 to 4126 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AA234587 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3077 to 3434 1 to 359       359/359
(100 %)
2 diff
(99.5 %id)
AA406642 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3674 to 4128 455 to 1       455/455
(100 %)
0 diff
(100 %id)
AA609954   .a 2918 to 3128 241 to 31   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 211/211
(100 %)
0 diff
(100 %id)
AA633160 colon, colon tumor RER+ .a 2847 to 3127 281 to 1       281/281
(100 %)
0 diff
(100 %id)
AA765123 germinal center B cell .a 3720 to 4126 430 to 24   AAA   407/407
(100 %)
0 diff
(100 %id)
AA843533 parathyroid gland, parathyroid tumor .a 3593 to 4126 546 to 13   AAA   534/534
(100 %)
0 diff
(100 %id)
AA911919 adenocarcinoma, colon .a 2918 to 3127 210 to 1       210/210
(100 %)
0 diff
(100 %id)
AA911920 adenocarcinoma, colon .a 2815 to 3127 313 to 1       313/313
(100 %)
0 diff
(100 %id)
AA862001 squamous cell carcinoma from base of tongue, tongue .a 3811 to 4126 316 to 1       316/316
(100 %)
0 diff
(100 %id)
AA923774 pooled .a 3722 to 4125 404 to 1       404/404
(100 %)
3 diff
(99.3 %id)
AI218736 pooled .a 3692 to 4131 443 to 4       440/443
(99 %)
0 diff
(100 %id)
AI034302 senescent fibroblast .a 3779 to 4126 362 to 15   AAA   348/348
(100 %)
2 diff
(99.5 %id)
AI149261 uterus .a 3698 to 4131 441 to 5       437/443
(98 %)
0 diff
(100 %id)
AI221573 placenta .a 3819 to 4126 308 to 1       308/308
(100 %)
1 diff
(99.7 %id)
AI306129 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2745 to 3128 395 to 12   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 384/384
(100 %)
2 diff
(99.5 %id)
AI262308 adenocarcinoma, colon .a 3720 to 4129 410 to 1       410/410
(100 %)
0 diff
(100 %id)
AI281064 adenocarcinoma, colon .a 3706 to 4129 424 to 1       424/424
(100 %)
5 diff
(98.9 %id)
AI302415 2 pooled tumors (clear cell type), Kidney .a 2881 to 3131 251 to 1       251/251
(100 %)
0 diff
(100 %id)
AI346969 adenocarcinoma, colon .a 3635 to 4129 497 to 1       497/497
(100 %)
4 diff
(99.2 %id)
AI266734 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3723 to 4126 404 to 1       404/404
(100 %)
0 diff
(100 %id)
AI332623 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3650 to 4126 477 to 1       477/477
(100 %)
0 diff
(100 %id)
AI352401 pooled germ cell tumors .a 3818 to 4126 322 to 14   AAA   309/309
(100 %)
0 diff
(100 %id)
AI365203 pooled germ cell tumors .a 2940 to 3143 219 to 16   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 204/204
(100 %)
1 diff
(99.6 %id)
AI253097 Kidney .a 3723 to 4126 417 to 14   AAA   404/404
(100 %)
2 diff
(99.6 %id)
AI565227 pooled .a 3900 to 4126 227 to 1       227/227
(100 %)
0 diff
(100 %id)
AI431301 aorta .a 3712 to 4126 460 to 46   AAA   415/415
(100 %)
0 diff
(100 %id)
AI473781 colon, moderately-differentiated adenocarcinoma .a 3710 to 4126 417 to 1       417/417
(100 %)
0 diff
(100 %id)
AI479234 Kidney .a 3629 to 4129 501 to 1       501/501
(100 %)
0 diff
(100 %id)
AI500253 anaplastic oligodendroglioma, brain .a 3708 to 4126 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AI560964 anaplastic oligodendroglioma, brain .a 3659 to 4126 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AI912120 carcinoid, lung .a 3713 to 4125 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
AI692780 carcinoid, lung .a 3713 to 4123 411 to 1       411/411
(100 %)
0 diff
(100 %id)
AI692783 carcinoid, lung .a 3586 to 4126 541 to 1       541/541
(100 %)
1 diff
(99.9 %id)
AI769103 pooled .a 3633 to 4126 508 to 15   AAA   494/494
(100 %)
0 diff
(100 %id)
AI765925 Kidney .a 1885 to 2337 466 to 13       454/466
(97 %)
2 diff
(99.6 %id)
AI761804 colon, colon tumor, RER+ .a 2569 to 3128 561 to 1       561/561
(100 %)
5 diff
(99.2 %id)
AI869528 anaplastic oligodendroglioma, brain .a 3805 to 4126 321 to 1       321/321
(100 %)
1 diff
(99.7 %id)
AI925794 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3836 to 4126 303 to 12   AAA   292/401
(72 %)
3 diff
(99.3 %id)
AI936955 anaplastic oligodendroglioma, brain .a 1252 to 1669 422 to 5       418/422
(99 %)
7 diff
(98.4 %id)
AI961161 pooled germ cell tumors .a 3686 to 4128 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI989624 pooled germ cell tumors .a 3692 to 4125 434 to 1       434/434
(100 %)
0 diff
(100 %id)
AW071704 anaplastic oligodendroglioma, brain .a 3677 to 4126 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AW008413 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3706 to 4127 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
AW075276 anaplastic oligodendroglioma, brain .a 2819 to 3128 326 to 1       326/356
(91 %)
16 diff
(95.6 %id)
AW474460 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3686 to 4126 441 to 1       441/441
(100 %)
1 diff
(99.8 %id)
AW468519 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 3709 to 4126 418 to 1       418/418
(100 %)
0 diff
(100 %id)
AW593430 pooled germ cell tumors .a 3733 to 4126 395 to 1       395/395
(100 %)
8 diff
(98.0 %id)
BF507849   .a 3728 to 4126 416 to 18   AAA   399/409
(97 %)
1 diff
(99.8 %id)
BF508025   .e-u 124 to 583 474 to 15 D31E F53L AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 460/471
(97 %)
10 diff
(97.9 %id)
CF134572 CNCAP(3)T-225 cell line, Prostate .a 2958 to 3419 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
BE466679 pooled germ cell tumors .a 3692 to 4126 435 to 1       435/435
(100 %)
0 diff
(100 %id)
BE504626 pooled germ cell tumors .a 3688 to 4126 451 to 14   AAA   438/438
(100 %)
2 diff
(99.6 %id)
BF432250 brain, glioblastoma (pooled) .a 3648 to 4128 482 to 1       482/482
(100 %)
9 diff
(98.2 %id)
BE644676 pooled .a 3764 to 4131 372 to 5       368/372
(98 %)
0 diff
(100 %id)
BE675257 B-cell, chronic lymphotic leukemia .a 3680 to 4134 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
BE675654 B-cell, chronic lymphotic leukemia .e-u 160 to 584 423 to 1 S17L K18R A19Q A20Q R21A ...     423/423
(100 %)
2 diff
(99.6 %id)
BE676083 B-cell, chronic lymphotic leukemia .e-u 160 to 584 425 to 1 exact tiling clone,   425/425
(100 %)
0 diff
(100 %id)
BE856761 pooled .a 3576 to 4125 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
BF055564 pooled .a 3645 to 4131 490 to 4       487/490
(99 %)
0 diff
(100 %id)
BF433898 carcinoid, lung .a 3714 to 4127 414 to 1       414/414
(100 %)
0 diff
(100 %id)
BE868389 adenocarcinoma, colon .a 3082 to 3794 1 to 701       701/914
(76 %)
22 diff
(97.6 %id)
BF107196 placenta .a 3471 to 4138 1 to 661       661/707
(93 %)
26 diff
(96.4 %id)
BF687939 brain, glioblastoma .a 3778 to 4125 1 to 343   AAA   343/343
(100 %)
11 diff
(96.8 %id)
BG106803 lymph, lymphoma, cell line .a 3246 to 3996 1 to 740       740/928
(79 %)
24 diff
(97.5 %id)
BG030182 breast, mammary adenocarcinoma, cell line .a 1817 to 2528 29 to 740       712/1076
(66 %)
18 diff
(98.4 %id)
BG033898 breast, mammary adenocarcinoma, cell line .a 1509 to 2205 1 to 708       658/1079
(60 %)
37 diff
(96.6 %id)
BC048309 Duodenum, adenocarcinoma .a 2019 to 4126 1 to 2108   available from MGC, AAA   2108/2108
(100 %)
0 diff
(100 %id)
BG116787 duodenal adenocarcinoma, cell line, small intestine .a 2019 to 2782 1 to 767   available from MGC,   765/768
(99 %)
18 diff
(97.7 %id)
BG119659 adenocarcinoma, cell line, Liver .a 2878 to 3602 1 to 723       723/846
(85 %)
8 diff
(99.1 %id)
BG163645 hypernephroma, cell line, Kidney .a 2003 to 2778 1 to 774       774/959
(80 %)
35 diff
(96.4 %id)
BG253674 adenocarcinoma, cell line, Prostate .a 1663 to 2442 1 to 790       790/908
(87 %)
12 diff
(98.7 %id)
BG255029 adenocarcinoma, cell line, Prostate .a 3652 to 4131 1 to 481       481/494
(97 %)
12 diff
(97.6 %id)
BC023255 Bladder, transitional cell papilloma .a 1758 to 4126 1 to 2369   available from MGC, AAA   2369/2369
(100 %)
0 diff
(100 %id)
BG287368 bladder, transitional cell papilloma, cell line .a 1758 to 2528 1 to 779   available from MGC,   779/1064
(73 %)
33 diff
(96.9 %id)
BG291961 bladder, transitional cell papilloma, cell line .a 3532 to 4129 19 to 612   AAA   594/612
(97 %)
6 diff
(99.1 %id)
BG614074 embryonal carcinoma, testis .a 2143 to 2946 1 to 812       773/1046
(73 %)
27 diff
(97.5 %id)
BG911133 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1465 to 2286 1 to 818       818/820
(99 %)
13 diff
(98.5 %id)
BI253410 cervical carcinoma cell line, cervix .a 1547 to 2223 1 to 677       677/677
(100 %)
1 diff
(99.9 %id)
BI254803 cervical carcinoma cell line, cervix .a 3953 to 4131 1 to 179       179/191
(93 %)
1 diff
(99.5 %id)
BI254772 cervical carcinoma cell line, cervix .a 3434 to 4129 1 to 694   AAA   694/694
(100 %)
5 diff
(99.3 %id)
BM014435 breast, mammary adenocarcinoma, cell line .b 3 to 827 1 to 829   tiling clone,   829/829
(100 %)
7 diff
(99.2 %id)
BC111047 Eye, retinoblastoma .a 340 to 4126 1 to 3787   tiling clone, AAA   3787/3787
(100 %)
0 diff
(100 %id)
BM465327 eye, retinoblastoma .a 334 to 1062 9 to 744       736/1015
(72 %)
15 diff
(98.6 %id)
BM463660 leiomyosarcoma, uterus .a 318 to 1247 1 to 927       927/1020
(90 %)
23 diff
(97.8 %id)
BM806091 leiomyosarcoma, uterus .a 2559 to 3501 12 to 954       943/1081
(87 %)
13 diff
(98.8 %id)
BM806115 leiomyosarcoma, uterus .a 2571 to 3469 23 to 938       916/1102
(83 %)
42 diff
(96.2 %id)
BM905875 leiomyosarcoma, uterus .a 2747 to 3732 1 to 997       997/998
(99 %)
25 diff
(97.5 %id)
BM473699 duodenal adenocarcinoma, cell line, small intestine .a 2799 to 3644 32 to 884       853/1195
(71 %)
10 diff
(99.2 %id)
BM924403 pooled colon, kidney, stomach .a 1528 to 2442 24 to 943       920/1088
(84 %)
19 diff
(98.3 %id)
BQ050638 leiomyosarcoma, uterus .a 1629 to 2319 1 to 694       692/1110
(62 %)
11 diff
(99.1 %id)
BQ021324 lung, Metastatic Chondrosarcoma .a 2510 to 3128 634 to 16   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 619/619
(100 %)
0 diff
(100 %id)
BQ009844 Chondrosarcoma, Left Pubic Bone .a 3492 to 4126 653 to 19   AAA   635/635
(100 %)
0 diff
(100 %id)
BU169926 epithelioid carcinoma, Pancreas .a 1808 to 2637 1 to 831       831/832
(99 %)
4 diff
(99.6 %id)
BQ424500 leiomyosarcoma, uterus .a 1622 to 2417 1 to 805       805/864
(93 %)
13 diff
(98.5 %id)
BQ440594 leiomyosarcoma, uterus .a 509 to 1363 1 to 859       859/860
(99 %)
8 diff
(99.1 %id)
BU172777 eye, retinoblastoma .a 1358 to 2174 1 to 823       823/823
(100 %)
12 diff
(98.6 %id)
BU195507 leiomyosarcoma, uterus .a 941 to 1778 1 to 841       841/877
(95 %)
9 diff
(99.0 %id)
BQ722309 sympathetic trunk .d 1 to 894 1 to 891 exact tiling clone,   891/894
(99 %)
18 diff
(98.0 %id)
BQ937699 leiomyosarcoma, uterus .a 1641 to 2568 1 to 936       936/939
(99 %)
19 diff
(98.0 %id)
BU928659 brain, glioblastoma .a 2284 to 2999 1 to 727       727/768
(94 %)
17 diff
(97.8 %id)
BU935524 mixed (pool of 40 RNAs) .b 1080 to 1843 1 to 772   tiling clone,   772/775
(99 %)
17 diff
(97.9 %id)
CB985443 Pooled-Glandular .a 2256 to 2918 1 to 663       663/861
(77 %)
6 diff
(99.4 %id)
CB991226 placenta, pre-eclamptic placenta .a 26 to 570 23 to 564       542/618
(87 %)
16 diff
(97.5 %id)
CD244439 testis .a 837 to 1630 1 to 799       799/886
(90 %)
12 diff
(98.7 %id)
CD556733 brain, Pituitary .a 2827 to 3650 23 to 860       838/905
(92 %)
20 diff
(97.8 %id)
CD514208 White Matter .a 2827 to 3629 1 to 815       815/931
(87 %)
19 diff
(98.0 %id)
CD522836 pooled .a 1917 to 2660 1 to 756       756/756
(100 %)
14 diff
(98.2 %id)
CD655006 Embryonic Stem cells .a 1236 to 2010 1 to 764       764/854
(89 %)
20 diff
(97.7 %id)
CF243078 Brain glioblastoma .a 1502 to 2286 1 to 789       789/864
(91 %)
6 diff
(99.4 %id)
TI_59392453   .b 1 to 827 85 to 915   tiling clone,   831/831
(100 %)
7 diff
(99.2 %id)
CB122355 Liver .a 3073 to 3634 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
BP428632   .a 3096 to 3494 1 to 399       399/399
(100 %)
2 diff
(99.5 %id)
DA642475 Liver .a 1561 to 2133 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB321352 Liver .a 3583 to 4126 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
BY993975   .a 1554 to 2122 13 to 581       569/581
(97 %)
7 diff
(98.8 %id)
NM_152716.2   .a 2 to 4126 1 to 4125 exact RefSeq, AAA   4125/4125
(100 %)
0 diff
(100 %id)
DA730602   .a 2211 to 3039 2 to 826   capped   825/825
(100 %)
9 diff
(99.0 %id)
DB362494   .a 3533 to 4126 591 to 1       591/595
(99 %)
7 diff
(98.9 %id)
DA737640   .a 509 to 1323 2 to 816   capped   815/817
(99 %)
10 diff
(98.8 %id)
DB370248   .a 2552 to 3128 577 to 1       577/577
(100 %)
12 diff
(98.0 %id)
DA748976   .a 1773 to 2335 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
CV570019 cornea, eye .a 2542 to 3150 1 to 609       609/609
(100 %)
0 diff
(100 %id)
D20653   .a 3651 to 3700 1 to 50     Submitted on the opposite strand 50/52
(96 %)
1 diff
(98.1 %id)
CR989949 T-Lymphocytes .a 57 to 403 1 to 347       347/347
(100 %)
5 diff
(98.6 %id)
BM742405 Ascites, stomach .a 3735 to 4126 1 to 392   AAA   392/392
(100 %)
0 diff
(100 %id)
BM855046 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
BM821979 stomach .a 3813 to 4028 1 to 217       217/217
(100 %)
2 diff
(99.1 %id)
BM822937 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
BM829812 stomach .a 2320 to 2758 1 to 439       439/439
(100 %)
2 diff
(99.6 %id)
BM830062 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
BM830142 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
DA992102 synovial membrane tissue from rheumatioidarthritis .a 43 to 367 2 to 326   capped   325/325
(100 %)
0 diff
(100 %id)
DR002775 fetal brain .a 513 to 1000 8 to 494       487/494
(98 %)
13 diff
(97.4 %id)
DR001504 fetal brain .a 25 to 702 1 to 678       678/678
(100 %)
4 diff
(99.5 %id)
DB089564 testis .a 61 to 630 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB137839 thymus .a 25 to 213 2 to 190   capped   189/189
(100 %)
0 diff
(100 %id)
DC409866 thymus .a 2 to 603 1 to 602       602/602
(100 %)
0 diff
(100 %id)
TI_154062325   .a 3261 to 4126 934 to 79   AAA   856/934
(91 %)
24 diff
(97.5 %id)
TI_154162602   .a 2927 to 3499 61 to 641       581/1196
(48 %)
15 diff
(98.8 %id)
DB167485 kidney, tumor tissue .a 1 to 550 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB225444 trachea .a 484 to 1036 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BM691639 eye, RPE and Choroid .a 3617 to 4131 545 to 31     Submitted on the opposite strand 515/545
(94 %)
0 diff
(100 %id)
BM929899 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2563 to 2871 1 to 309       309/309
(100 %)
0 diff
(100 %id)
BQ773067 Chondrosarcoma Cell line .a 3499 to 4126 645 to 19   AAA   627/627
(100 %)
2 diff
(99.7 %id)
CA421114 Bone, Enchondroma cell line .a 3523 to 4126 621 to 19   AAA   603/603
(100 %)
1 diff
(99.9 %id)
CA421807 Bone, Enchondroma cell line .a 3479 to 4126 666 to 19   AAA   648/648
(100 %)
0 diff
(100 %id)
BU626719 Alveolar Macrophage, lung .a 3478 to 4126 667 to 19   AAA   649/649
(100 %)
2 diff
(99.7 %id)
DB257506 uterus .a 1975 to 2483 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DC298844 adrenal gland .a 1629 to 2319 1 to 694     Suspected internal deletion, this clone was ignored 692/1110
(62 %)
11 diff
(99.1 %id)
AK127943 synovial membrane tissue from rheumatioidarthritis .a 1629 to 2319 1 to 694   available from FLJ, Suspected internal deletion, this clone was ignored 692/1110
(62 %)
11 diff
(99.1 %id)
AK293213 adrenal gland .a 2510 to 3128 634 to 16     Suspected internal deletion, this clone was ignored 619/619
(100 %)
0 diff
(100 %id)
AA219236 brain, neuroepithelial cells .a 2510 to 3128 634 to 16     This clone was ignored 619/619
(100 %)
0 diff
(100 %id)
AA262262 germinal center B cell .a 3492 to 4126 653 to 19     This clone was ignored 635/635
(100 %)
0 diff
(100 %id)
AA262873 germinal center B cell .a 3492 to 4126 653 to 19     This clone was ignored 635/635
(100 %)
0 diff
(100 %id)
BU169926 epithelioid carcinoma, Pancreas .a 1808 to 2637 1 to 831       831/832
(99 %)
4 diff
(99.6 %id)
BU169926 epithelioid carcinoma, Pancreas .a 1808 to 2637 1 to 831       831/832
(99 %)
4 diff
(99.6 %id)
BQ424500 leiomyosarcoma, uterus .a 1622 to 2417 1 to 805       805/864
(93 %)
13 diff
(98.5 %id)
BQ424500 leiomyosarcoma, uterus .a 1622 to 2417 1 to 805       805/864
(93 %)
13 diff
(98.5 %id)
BQ440594 leiomyosarcoma, uterus .a 509 to 1363 1 to 859       859/860
(99 %)
8 diff
(99.1 %id)
BQ440594 leiomyosarcoma, uterus .a 509 to 1363 1 to 859       859/860
(99 %)
8 diff
(99.1 %id)
BU172777 eye, retinoblastoma .a 1358 to 2174 1 to 823       823/823
(100 %)
12 diff
(98.6 %id)
BU172777 eye, retinoblastoma .a 1358 to 2174 1 to 823       823/823
(100 %)
12 diff
(98.6 %id)
BU195507 leiomyosarcoma, uterus .a 941 to 1778 1 to 841       841/877
(95 %)
9 diff
(99.0 %id)
BU195507 leiomyosarcoma, uterus .a 941 to 1778 1 to 841       841/877
(95 %)
9 diff
(99.0 %id)
BQ722309 sympathetic trunk .d 1 to 894 1 to 891 exact tiling clone,   891/894
(99 %)
18 diff
(98.0 %id)
BQ937699 leiomyosarcoma, uterus .a 1641 to 2568 1 to 936       936/939
(99 %)
19 diff
(98.0 %id)
BQ937699 leiomyosarcoma, uterus .a 1641 to 2568 1 to 936       936/939
(99 %)
19 diff
(98.0 %id)
BU928659 brain, glioblastoma .a 2284 to 2999 1 to 727       727/768
(94 %)
17 diff
(97.8 %id)
BU928659 brain, glioblastoma .a 2284 to 2999 1 to 727       727/768
(94 %)
17 diff
(97.8 %id)
BU935524 mixed (pool of 40 RNAs) .b 1080 to 1843 1 to 772   tiling clone,   772/775
(99 %)
17 diff
(97.9 %id)
CB985443 Pooled-Glandular .a 2256 to 2918 1 to 663       663/861
(77 %)
6 diff
(99.4 %id)
CB991226 placenta, pre-eclamptic placenta .a 26 to 570 23 to 564       542/618
(87 %)
16 diff
(97.5 %id)
CB991226 placenta, pre-eclamptic placenta .a 26 to 570 23 to 564       542/618
(87 %)
16 diff
(97.5 %id)
CD244439 testis .a 837 to 1630 1 to 799       799/886
(90 %)
12 diff
(98.7 %id)
CD556733 brain, Pituitary .a 2827 to 3650 23 to 860       838/905
(92 %)
20 diff
(97.8 %id)
CD556733 brain, Pituitary .a 2827 to 3650 23 to 860       838/905
(92 %)
20 diff
(97.8 %id)
CD514208 White Matter .a 2827 to 3629 1 to 815       815/931
(87 %)
19 diff
(98.0 %id)
CD522836 pooled .a 1917 to 2660 1 to 756       756/756
(100 %)
14 diff
(98.2 %id)
CD655006 Embryonic Stem cells .a 1236 to 2010 1 to 764       764/854
(89 %)
20 diff
(97.7 %id)
CF243078 Brain glioblastoma .a 1502 to 2286 1 to 789       789/864
(91 %)
6 diff
(99.4 %id)
TI_59392453   .b 1 to 827 85 to 915   tiling clone,   831/831
(100 %)
7 diff
(99.2 %id)
CB122355 Liver .a 3073 to 3634 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
BP428632   .a 3096 to 3494 1 to 399       399/399
(100 %)
2 diff
(99.5 %id)
DA642475 Liver .a 1561 to 2133 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB321352 Liver .a 3583 to 4126 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
BY993975   .a 1554 to 2122 13 to 581       569/581
(97 %)
7 diff
(98.8 %id)
NM_152716.2   .a 2 to 4126 1 to 4125 exact RefSeq, AAA   4125/4125
(100 %)
0 diff
(100 %id)
DA730602   .a 2211 to 3039 2 to 826   capped   825/825
(100 %)
9 diff
(99.0 %id)
DB362494   .a 3533 to 4126 591 to 1       591/595
(99 %)
7 diff
(98.9 %id)
DA737640   .a 509 to 1323 2 to 816   capped   815/817
(99 %)
10 diff
(98.8 %id)
DB370248   .a 2552 to 3128 577 to 1       577/577
(100 %)
12 diff
(98.0 %id)
DA748976   .a 1773 to 2335 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
CV570019 cornea, eye .a 2542 to 3150 1 to 609       609/609
(100 %)
0 diff
(100 %id)
CV570019 cornea, eye .a 2542 to 3150 1 to 609       609/609
(100 %)
0 diff
(100 %id)
D20653   .a 3651 to 3700 1 to 50     Submitted on the opposite strand 50/52
(96 %)
1 diff
(98.1 %id)
CR989949 T-Lymphocytes .a 57 to 403 1 to 347       347/347
(100 %)
5 diff
(98.6 %id)
BM742405 Ascites, stomach .a 3735 to 4126 1 to 392   AAA   392/392
(100 %)
0 diff
(100 %id)
BM742405 Ascites, stomach .a 3735 to 4126 1 to 392   AAA   392/392
(100 %)
0 diff
(100 %id)
BM855046 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
BM821979 stomach .a 3813 to 4028 1 to 217       217/217
(100 %)
2 diff
(99.1 %id)
BM822937 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
BM829812 stomach .a 2320 to 2758 1 to 439       439/439
(100 %)
2 diff
(99.6 %id)
BM830062 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
BM830142 stomach .a 3788 to 4126 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
DA992102 synovial membrane tissue from rheumatioidarthritis .a 43 to 367 2 to 326   capped   325/325
(100 %)
0 diff
(100 %id)
DR002775 fetal brain .a 513 to 1000 8 to 494       487/494
(98 %)
13 diff
(97.4 %id)
DR001504 fetal brain .a 25 to 702 1 to 678       678/678
(100 %)
4 diff
(99.5 %id)
DB089564 testis .a 61 to 630 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB137839 thymus .a 25 to 213 2 to 190   capped   189/189
(100 %)
0 diff
(100 %id)
DC409866 thymus .a 2 to 603 1 to 602       602/602
(100 %)
0 diff
(100 %id)
TI_154062325   .a 3261 to 4126 934 to 79   AAA   856/934
(91 %)
24 diff
(97.5 %id)
TI_154162602   .a 2927 to 3499 61 to 641       581/1196
(48 %)
15 diff
(98.8 %id)
DB167485 kidney, tumor tissue .a 1 to 550 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB225444 trachea .a 484 to 1036 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BM691639 eye, RPE and Choroid .a 3617 to 4131 545 to 31     Submitted on the opposite strand 515/545
(94 %)
0 diff
(100 %id)
BM691639 eye, RPE and Choroid .a 3617 to 4131 545 to 31     Submitted on the opposite strand 515/545
(94 %)
0 diff
(100 %id)
BM929899 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2563 to 2871 1 to 309       309/309
(100 %)
0 diff
(100 %id)
BM929899 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2563 to 2871 1 to 309       309/309
(100 %)
0 diff
(100 %id)
BQ773067 Chondrosarcoma Cell line .a 3499 to 4126 645 to 19   AAA   627/627
(100 %)
2 diff
(99.7 %id)
CA421114 Bone, Enchondroma cell line .a 3523 to 4126 621 to 19   AAA   603/603
(100 %)
1 diff
(99.9 %id)
CA421114 Bone, Enchondroma cell line .a 3523 to 4126 621 to 19   AAA   603/603
(100 %)
1 diff
(99.9 %id)
CA421807 Bone, Enchondroma cell line .a 3479 to 4126 666 to 19   AAA   648/648
(100 %)
0 diff
(100 %id)
CA421807 Bone, Enchondroma cell line .a 3479 to 4126 666 to 19   AAA   648/648
(100 %)
0 diff
(100 %id)
BU626719 Alveolar Macrophage, lung .a 3478 to 4126 667 to 19   AAA   649/649
(100 %)
2 diff
(99.7 %id)
BU626719 Alveolar Macrophage, lung .a 3478 to 4126 667 to 19   AAA   649/649
(100 %)
2 diff
(99.7 %id)
DB257506 uterus .a 1975 to 2483 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C