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Gene C17orf104TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
79 supporting clones for gene C17orf104 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB460166.
matches multiple genes
testis .a 1 to 464 1 to 464   tiling clone, also hits gene geywee 464/464
(100 %)
2 diff
(99.6 %id)
NM_001145080.2   .a 4 to 4681 1 to 4678 exact RefSeq, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 4678/4678
(100 %)
0 diff
(100 %id)
DB095378 testis .a 28 to 586 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DB459438.
matches multiple genes
testis .a 82 to 563 1 to 482     also hits gene geywee 482/482
(100 %)
0 diff
(100 %id)
DV080634 pooled .a 238 to 656 419 to 1     Submitted on the opposite strand 419/419
(100 %)
0 diff
(100 %id)
TI_985974585   .a 273 to 722 17 to 465   tiling clone,   449/468
(95 %)
10 diff
(97.9 %id)
DV080633 pooled .a 286 to 712 1 to 427       427/427
(100 %)
4 diff
(99.1 %id)
DT932644 pooled .a 374 to 688 321 to 9     Submitted on the opposite strand 313/322
(97 %)
0 diff
(100 %id)
TI_977333811   .a 442 to 743 41 to 329   fully sequenced,   289/329
(87 %)
15 diff
(95.5 %id)
DT932643 pooled .a 443 to 703 1 to 261       261/261
(100 %)
5 diff
(98.1 %id)
TI_977333812   .a 552 to 688 161 to 25   fully sequenced,   137/161
(85 %)
0 diff
(100 %id)
TI_1752769456   .a 687 to 1764 70 to 1142   tiling clone, Submitted on the opposite strand 1073/1293
(82 %)
10 diff
(99.3 %id)
TI_1752771054   .a 687 to 1388 703 to 4       700/1266
(55 %)
0 diff
(100 %id)
TI_1752771050   .a 723 to 1888 1160 to 10   tiling clone,   1151/1286
(89 %)
0 diff
(100 %id)
BI032856 nervous_normal .a 918 to 1373 482 to 14       469/482
(97 %)
0 diff
(100 %id)
DB081722 testis .a 1094 to 1629 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB072679 testis .a 1191 to 1721 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
BC041481 Liver, adenocarcinoma .a 1975 to 4398 1 to 2423   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2423/2423
(100 %)
3 diff
(99.9 %id)
BI868515 adenocarcinoma, cell line, Liver .a 1975 to 2659 11 to 695   available from MGC,   685/695
(98 %)
7 diff
(99.0 %id)
TI_57228266   .a 1975 to 2659 61 to 745       685/696
(98 %)
7 diff
(99.0 %id)
AI652490 pooled germ cell tumors .a 2111 to 2526 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
BE504744 pooled germ cell tumors .a 2111 to 2527 418 to 2       417/418
(99 %)
0 diff
(100 %id)
AW449752   .a 2128 to 2543 416 to 1       416/416
(100 %)
4 diff
(99.1 %id)
AW302162 Kidney .a 2558 to 3094 534 to 1       534/534
(100 %)
7 diff
(98.7 %id)
DB525217 testis .a 2679 to 3123 1 to 445     Submitted on the opposite strand 445/445
(100 %)
7 diff
(98.5 %id)
DB516158 testis .a 2725 to 3154 1 to 430     Submitted on the opposite strand 430/433
(99 %)
3 diff
(99.4 %id)
BE882947 leiomyosarcoma, uterus .a 2939 to 3577 1 to 638       638/881
(72 %)
41 diff
(95.4 %id)
AA868689   .a 3076 to 3356 282 to 2       281/282
(99 %)
0 diff
(100 %id)
DB341704 testis .a 3624 to 4173 550 to 1   tiling clone,   550/550
(100 %)
0 diff
(100 %id)
AA205140   .a 3634 to 3919 1 to 288     Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 288/288
(100 %)
3 diff
(99.0 %id)
AA205293   .a 3634 to 3986 1 to 355     Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 355/363
(97 %)
3 diff
(99.2 %id)
TI_154092265   .a 3838 to 4666 883 to 67   tiling clone,   817/983
(83 %)
0 diff
(100 %id)
BU854060 testis .a 3859 to 4617 1 to 761       761/761
(100 %)
18 diff
(97.7 %id)
AA205120   .a 4408 to 4681 289 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 274/274
(100 %)
0 diff
(100 %id)
AA205131   .a 4427 to 4681 270 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 255/255
(100 %)
0 diff
(100 %id)
DC399166 testis .b 1 to 553 1 to 553   tiling clone,   553/553
(100 %)
0 diff
(100 %id)
BU570001 testis .b 4 to 800 1 to 798       798/798
(100 %)
8 diff
(99.0 %id)
DC403085 testis .b 5 to 563 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
DB450695 testis .b 6 to 498 1 to 495       495/495
(100 %)
5 diff
(99.0 %id)
AK302001 testis .b 7 to 2573 1 to 2567   tiling clone,   2567/2567
(100 %)
1 diff
(100.0 %id)
DC396706 testis .b 7 to 582 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DB454768 testis .b 8 to 488 1 to 481       481/481
(100 %)
4 diff
(99.2 %id)
DB449978 testis .b 9 to 470 1 to 459       459/459
(100 %)
24 diff
(94.8 %id)
BX095544   .b 1895 to 2573 1 to 681   AAA   681/681
(100 %)
2 diff
(99.8 %id)
AA429502   .b 1895 to 2336 1 to 442   fully sequenced,   442/442
(100 %)
0 diff
(100 %id)
AI066743   .b 2082 to 2584 503 to 1       503/503
(100 %)
0 diff
(100 %id)
AW169992 pooled .b 2133 to 2577 445 to 1       445/445
(100 %)
0 diff
(100 %id)
DB515419 testis .b 2144 to 2573 1 to 429     Submitted on the opposite strand 429/429
(100 %)
2 diff
(99.6 %id)
DB510003 testis .b 2205 to 2573 1 to 369     Submitted on the opposite strand 369/369
(100 %)
3 diff
(99.2 %id)
AA429503   .b 2275 to 2576 302 to 1   fully sequenced,   302/302
(100 %)
0 diff
(100 %id)
AA723746 pooled .b 2364 to 2576 213 to 1       213/213
(100 %)
1 diff
(99.6 %id)
DB520175 testis .b 2390 to 2573 1 to 184     Submitted on the opposite strand 184/184
(100 %)
0 diff
(100 %id)
AI377868 pooled .b 2442 to 2896 456 to 1   tiling clone,   456/456
(100 %)
5 diff
(99.0 %id)
BI459209 testis .c 1 to 634 7 to 647       647/648
(99 %)
22 diff
(96.7 %id)
BC035159 testis .c 1 to 4068 7 to 4076 N218T tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 4071/4071
(100 %)
7 diff
(99.9 %id)
BC132822 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 366 to 2890 1 to 2525   tiling clone,   2525/2525
(100 %)
0 diff
(100 %id)
BC136642 Testicle, PCR rescued clones .c 366 to 2890 1 to 2525       2525/2525
(100 %)
0 diff
(100 %id)
TI_1752771048   .c 1392 to 2520 1124 to 9       1116/1275
(87 %)
8 diff
(99.4 %id)
TI_1752769454   .c 1726 to 2891 1223 to 59     Submitted on the opposite strand 1165/1276
(91 %)
18 diff
(98.6 %id)
DC398771 testis .d 1 to 560 1 to 561   tiling clone,   561/561
(100 %)
4 diff
(99.3 %id)
AK093167 testis .d 17 to 1883 1 to 1867 N154T G386S tiling clone, available from FLJ,   1867/1867
(100 %)
2 diff
(99.9 %id)
AX747969   .d 17 to 1883 1 to 1867 N154T G386S     1867/1867
(100 %)
2 diff
(99.9 %id)
DB445011 testis .d 17 to 452 1 to 436       436/436
(100 %)
0 diff
(100 %id)
DB025157 testis .d 18 to 571 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB336448 testis .d 1366 to 1883 519 to 1       519/519
(100 %)
1 diff
(99.9 %id)
DB454987.
matches multiple genes
testis .e 1 to 425 1 to 426 T64P E65A Y66I S67F S68K ... tiling clone, also hits gene geywee 426/426
(100 %)
3 diff
(99.3 %id)
AK097747 testis .f 1 to 2271 2 to 2272 exact tiling clone, available from FLJ,   2272/2272
(100 %)
0 diff
(100 %id)
DB049729 testis .f 1 to 558 2 to 560 exact capped   559/559
(100 %)
1 diff
(99.9 %id)
DB338482 testis .f 1707 to 2271 565 to 1       565/565
(100 %)
1 diff
(99.9 %id)
AK096357   .f 1821 to 5303 1 to 3483   tiling clone, available from FLJ,   3483/3483
(100 %)
12 diff
(99.7 %id)
DA744608   .f 1822 to 2346 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
AA969496 pooled .f 2093 to 2293 201 to 1       201/201
(100 %)
0 diff
(100 %id)
BU860823 mixed (pool of 40 RNAs) .f 2885 to 3324 1 to 440   tiling clone,   440/444
(99 %)
2 diff
(99.6 %id)
DB324930   .f 4842 to 5303 463 to 1       463/463
(100 %)
3 diff
(99.4 %id)
DB728137.
matches multiple genes
hippocampus .g-u 1 to 670 668 to 1 exact   also hits gene CCDC43 668/668
(100 %)
3 diff
(99.6 %id)
DB533758.
matches multiple genes
hippocampus .g-u 1 to 725 723 to 1 exact tiling clone, also hits gene CCDC43 723/723
(100 %)
12 diff
(98.4 %id)
DB557520.
matches multiple genes
hypothalamus .g-u 1 to 670 667 to 1 L31*   also hits gene CCDC43 667/667
(100 %)
3 diff
(99.6 %id)
BP395466 pancreatic islet .g-u 1 to 329 329 to 1 exact     329/335
(98 %)
0 diff
(100 %id)
BE169956 head_neck .g-u 124 to 378 6 to 259       254/260
(97 %)
5 diff
(98.1 %id)
BE674342 carcinoid, lung .g-u 322 to 854 533 to 1   tiling clone,   533/533
(100 %)
0 diff
(100 %id)
BF754840 colon .g-u 384 to 517 1 to 132       132/132
(100 %)
5 diff
(96.3 %id)
AI458175 carcinoid, lung .g-u 408 to 850 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI245284 Kidney .g-u 455 to 850 396 to 1       396/396
(100 %)
0 diff
(100 %id)
FN065681 breast carcinoma .g-u 745 to 798 1 to 55       55/56
(98 %)
2 diff
(96.5 %id)
BX492665   .h-u 1 to 345 1 to 345 P2G tiling clone,   345/345
(100 %)
5 diff
(98.6 %id)
AI016036 Kidney .i-u 1 to 92 96 to 5 S24T tiling clone,   92/96
(95 %)
0 diff
(100 %id)
DB060662 testis Gene C17orf104, variant not shown       capped      
DB339215 testis Gene C17orf104, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C