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Gene FAM116ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
132 supporting clones for gene FAM116A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_152678.2   .a 1 to 4656 2 to 4657 exact RefSeq, AAA   4657/4657
(100 %)
0 diff
(100 %id)
DB163127 thymus .a 1 to 591 2 to 592   tiling clone, capped   591/591
(100 %)
6 diff
(99.0 %id)
BC040291 testis .a 12 to 4651 1 to 4640 exact tiling clone, available from MGC, AAA   4640/4640
(100 %)
18 diff
(99.7 %id)
AK074156 Spleen .a 13 to 4656 1 to 4641 G229A tiling clone, available from FLJ,   4641/4641
(100 %)
20 diff
(99.6 %id)
TI_57183166   .a 40 to 834 32 to 827       796/839
(94 %)
13 diff
(98.5 %id)
DB504675 hypothalamus .a 61 to 533 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
DB504701 hypothalamus .a 61 to 528 1 to 468       468/468
(100 %)
0 diff
(100 %id)
CV024819 mixed .a 71 to 763 1 to 691       691/711
(97 %)
11 diff
(98.5 %id)
TI_1948094914   .a 71 to 886 128 to 945       818/1367
(59 %)
20 diff
(98.6 %id)
TI_1948095064   .a 71 to 834 130 to 893       764/1291
(59 %)
19 diff
(98.6 %id)
TI_1948095226   .a 71 to 889 133 to 958       826/1344
(61 %)
26 diff
(98.1 %id)
TI_1948095382   .a 71 to 818 127 to 881       755/1367
(55 %)
19 diff
(98.7 %id)
DA491544 brain .a 424 to 995 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
AA332106 Embryo, 8 weeks .a 586 to 953 1 to 376       376/377
(99 %)
15 diff
(96.1 %id)
DA764396 tongue .a 599 to 1177 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
CN275742 embryonic stem cells, DMSO-treated H9 cellline .a 637 to 1203 1 to 567       567/567
(100 %)
0 diff
(100 %id)
BC054343 Uterus, leiomyosarcoma .a 917 to 2787 1 to 1871   tiling clone, available from MGC, AAA   1871/1871
(100 %)
0 diff
(100 %id)
BU508856 leiomyosarcoma, uterus .a 918 to 1773 1 to 862   available from MGC,   862/943
(91 %)
11 diff
(98.9 %id)
DA616963   .a 973 to 1569 2 to 600   capped   599/599
(100 %)
7 diff
(98.9 %id)
DA569023 whole embryo, mainly head .a 1006 to 1888 2 to 883   capped   882/882
(100 %)
6 diff
(99.4 %id)
DA451489 tongue, tumor tissue .a 1013 to 1585 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
TI_1948094915   .a 1016 to 1896 1007 to 127       881/1284
(68 %)
26 diff
(98.0 %id)
TI_1948095227   .a 1017 to 1896 1008 to 126       883/1289
(68 %)
9 diff
(99.4 %id)
BX354072 Neuroblastoma Cot 25-normalized .a 1068 to 2014 1 to 947       947/947
(100 %)
6 diff
(99.4 %id)
TI_1948095065   .a 1108 to 1896 914 to 127       788/1282
(61 %)
7 diff
(99.5 %id)
TI_1948095383   .a 1110 to 1896 917 to 128       790/1292
(61 %)
4 diff
(99.7 %id)
BG258954 embryonal carcinoma, cell line, testis .a 1137 to 1765 1 to 632       632/680
(92 %)
13 diff
(98.1 %id)
BU184011 eye, retinoblastoma .a 1150 to 2040 1 to 892       892/894
(99 %)
5 diff
(99.5 %id)
CA395707 eye, RPE/choroid .a 1510 to 1953 1 to 445       445/445
(100 %)
4 diff
(99.2 %id)
AA331040 embryo .a 1513 to 1641 1 to 129       129/129
(100 %)
0 diff
(100 %id)
DB138902 thymus .a 1566 to 2100 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DA736056   .a 1613 to 2517 2 to 900   capped   899/899
(100 %)
16 diff
(98.3 %id)
DA422492 cervix .a 1846 to 2392 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
CF265025 Brain glioblastoma .a 1921 to 2660 1 to 738       738/742
(99 %)
2 diff
(99.8 %id)
BE001833 breast_normal .a 1936 to 2304 386 to 22     Submitted on the opposite strand 365/393
(92 %)
0 diff
(100 %id)
BE002083 breast_normal .a 1936 to 2308 378 to 8     Submitted on the opposite strand 371/385
(96 %)
0 diff
(100 %id)
BE002084 breast_normal .a 1936 to 2299 364 to 2     Submitted on the opposite strand 363/371
(97 %)
0 diff
(100 %id)
BE002085 breast_normal .a 1936 to 2304 372 to 7     Submitted on the opposite strand 366/379
(96 %)
0 diff
(100 %id)
AI401548 anaplastic oligodendroglioma, brain .a 2006 to 2471 464 to 1       464/464
(100 %)
1 diff
(99.8 %id)
BE145732 head_neck .a 2012 to 2453 441 to 1     Submitted on the opposite strand 441/441
(100 %)
3 diff
(99.4 %id)
BX505888   .a 2042 to 2682 1 to 641       641/656
(97 %)
4 diff
(99.4 %id)
BM467679 leiomyosarcoma, uterus .a 2301 to 3045 1 to 755       755/1170
(64 %)
5 diff
(99.6 %id)
DA748475   .a 2355 to 2674 2 to 322   capped   321/321
(100 %)
1 diff
(99.7 %id)
CB992602 placenta, pre-eclamptic placenta .a 2473 to 2952 22 to 503       482/769
(62 %)
24 diff
(96.9 %id)
EC481970 Prostate .a 2587 to 2701 113 to 1       113/113
(100 %)
2 diff
(98.3 %id)
BM474915 duodenal adenocarcinoma, cell line, small intestine .a 2632 to 2951 320 to 1   tiling clone, Submitted on the opposite strand 320/369
(86 %)
3 diff
(99.2 %id)
DB277449 uterus .a 3029 to 3561 2 to 534   capped   533/533
(100 %)
3 diff
(99.5 %id)
EC553383 Prostate .a 3154 to 3284 1 to 130       130/130
(100 %)
6 diff
(95.4 %id)
BF213929 bone marrow, from acute myelogenous leukemia .a 3420 to 4090 1 to 659       659/859
(76 %)
43 diff
(95.0 %id)
BG610861 adenocarcinoma, Prostate .a 3420 to 4115 1 to 699   tiling clone,   699/702
(99 %)
6 diff
(99.2 %id)
BE565262 bladder, carcinoma, cell line .a 3443 to 4025 1 to 581       581/750
(77 %)
29 diff
(96.2 %id)
BG616206 embryonal carcinoma, testis .a 3565 to 4288 1 to 731       731/989
(73 %)
47 diff
(95.3 %id)
BF247061 brain, glioblastoma .a 3566 to 4292 1 to 724       724/833
(86 %)
44 diff
(94.8 %id)
EC487035 Prostate .a 3621 to 3711 1 to 91       91/98
(92 %)
1 diff
(99.0 %id)
W32131 parathyroid gland, parathyroid tumor .a 3655 to 3953 1 to 301       301/303
(99 %)
6 diff
(98.1 %id)
BX354071 Neuroblastoma Cot 25-normalized .a 3663 to 4628 965 to 1       965/965
(100 %)
4 diff
(99.6 %id)
AW580909 leiomios .a 3701 to 4179 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
BG436183 placenta .a 3750 to 4424 1 to 677       677/677
(100 %)
2 diff
(99.8 %id)
EH340136   .a 3754 to 3832 1 to 79       79/79
(100 %)
0 diff
(100 %id)
BG113650 Bone, osteosarcoma, cell line .a 3756 to 4511 1 to 748       748/809
(92 %)
30 diff
(96.3 %id)
BM784540 lymph node, stomach .a 3810 to 4232 1 to 423       423/423
(100 %)
0 diff
(100 %id)
N75121 multiple sclerosis lesions .a 3831 to 4263 1 to 432   fully sequenced,   432/432
(100 %)
9 diff
(98.0 %id)
BE622614 melanotic melanoma, skin .a 3840 to 4632 822 to 25       798/822
(97 %)
0 diff
(100 %id)
FN165435 breast carcinoma .a 3866 to 3944 1 to 79       79/79
(100 %)
2 diff
(97.5 %id)
BF733225 amnion_normal .a 3868 to 4196 342 to 17     Submitted on the opposite strand 326/342
(95 %)
0 diff
(100 %id)
BU567726 testis .a 3879 to 4651 1 to 775       775/813
(95 %)
16 diff
(98.1 %id)
TI_154097744   .a 3901 to 4656 873 to 119   AAA   755/783
(96 %)
17 diff
(97.9 %id)
BU629629 cell lines, Chondrosarcoma .a 3980 to 4656 695 to 19   AAA   677/677
(100 %)
1 diff
(99.9 %id)
AW244158 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .a 4040 to 4415 402 to 27       376/402
(93 %)
0 diff
(100 %id)
CA440848 lung, Metastatic Chondrosarcoma .a 4049 to 4656 621 to 14   AAA   608/608
(100 %)
2 diff
(99.7 %id)
AA632959 thyroid .a 4067 to 4293 1 to 227       227/227
(100 %)
2 diff
(99.2 %id)
AA610159 thyroid .a 4074 to 4458 1 to 387       387/387
(100 %)
14 diff
(96.4 %id)
DB325416 tongue .a 4079 to 4651 573 to 1       573/576
(99 %)
1 diff
(99.9 %id)
BQ954207 leiomyosarcoma, uterus .a 4081 to 4651 1 to 571   AAA   571/571
(100 %)
1 diff
(99.9 %id)
DB355607 whole embryo, mainly head .a 4108 to 4656 546 to 1       546/551
(99 %)
5 diff
(99.1 %id)
BF438017 carcinoid, lung .a 4111 to 4654 545 to 2       544/545
(99 %)
0 diff
(100 %id)
DB325031   .a 4111 to 4656 547 to 1       547/550
(99 %)
5 diff
(99.1 %id)
DB368484   .a 4128 to 4656 529 to 1       529/532
(99 %)
16 diff
(97.0 %id)
DB304509 brain .a 4131 to 4651 523 to 1       523/523
(100 %)
2 diff
(99.7 %id)
DV461250 cochlea, ear .a 4140 to 4376 237 to 1     Submitted on the opposite strand 237/237
(100 %)
7 diff
(97.1 %id)
AI095503 uterus .a 4143 to 4651 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AI568608 anaplastic oligodendroglioma, brain .a 4143 to 4656 514 to 1       514/514
(100 %)
0 diff
(100 %id)
AI204208   .a 4159 to 4651 505 to 13   AAA   493/493
(100 %)
1 diff
(99.8 %id)
BE042940 carcinoid, lung .a 4174 to 4657 489 to 6       484/489
(98 %)
0 diff
(100 %id)
AI095858 uterus .a 4196 to 4654 465 to 7       459/465
(98 %)
0 diff
(100 %id)
AI149093 uterus .a 4206 to 4657 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AA976119 carcinoid, lung .a 4208 to 4654 448 to 2       447/448
(99 %)
0 diff
(100 %id)
N52870 multiple sclerosis lesions .a 4220 to 4651 441 to 1       441/465
(94 %)
8 diff
(98.3 %id)
AI620854 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4223 to 4651 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AA835838 germinal center B cell .a 4227 to 4654 441 to 15       427/441
(96 %)
0 diff
(100 %id)
FN088395 breast carcinoma .a 4229 to 4323 91 to 1     Submitted on the opposite strand 91/91
(100 %)
4 diff
(95.7 %id)
N52349 multiple sclerosis lesions .a 4233 to 4651 428 to 1   fully sequenced,   428/428
(100 %)
8 diff
(98.2 %id)
BX097784 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4239 to 4651 427 to 15   AAA   413/413
(100 %)
1 diff
(99.8 %id)
AA581802 germ cell tumor .a 4260 to 4651 408 to 16   AAA   393/393
(100 %)
2 diff
(99.5 %id)
AA971569 pooled .a 4260 to 4657 403 to 6       398/403
(98 %)
0 diff
(100 %id)
FN059229 breast carcinoma .a 4261 to 4362 105 to 1     Submitted on the opposite strand 105/110
(95 %)
3 diff
(97.3 %id)
AI246289 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4261 to 4651 391 to 1       391/391
(100 %)
4 diff
(99.0 %id)
W31684 parathyroid gland, parathyroid tumor .a 4270 to 4651 385 to 1       385/386
(99 %)
3 diff
(99.3 %id)
AI335636 pooled germ cell tumors .a 4272 to 4651 380 to 1       380/380
(100 %)
0 diff
(100 %id)
AA287553.
matches multiple genes
germinal center B cell .a 4283 to 4656 374 to 1     also hits gene TMSB15BandH2BFXP 374/374
(100 %)
10 diff
(97.4 %id)
AA994082 pooled .a 4301 to 4654 356 to 3       354/356
(99 %)
0 diff
(100 %id)
AI095710 uterus .a 4322 to 4651 330 to 1       330/330
(100 %)
2 diff
(99.4 %id)
AI250060 adenocarcinoma, Pancreas .a 4339 to 4651 332 to 20   AAA   313/313
(100 %)
1 diff
(99.7 %id)
AA291672 ovarian tumor, ovary .a 4361 to 4657 297 to 1       297/297
(100 %)
0 diff
(100 %id)
EH348597   .a 4362 to 4453 1 to 92       92/92
(100 %)
0 diff
(100 %id)
AA605125 adrenal adenoma, adrenal gland .a 4381 to 4656 298 to 23   AAA   276/276
(100 %)
0 diff
(100 %id)
BE463947 Kidney .a 4392 to 4654 266 to 4       263/266
(98 %)
0 diff
(100 %id)
AI422397 brain, glioblastoma (pooled) .a 4433 to 4656 227 to 2       226/227
(99 %)
0 diff
(100 %id)
CR747263 melanotic melanoma, skin .b 1 to 503 12 to 514   tiling clone,   503/514
(97 %)
9 diff
(98.3 %id)
BQ439906 melanotic melanoma, skin .b 2 to 379 1 to 383       383/1052
(36 %)
13 diff
(98.8 %id)
CR607826 Neuroblastoma Cot 25-normalized .b 302 to 2373 1 to 2072   tiling clone,   2072/2072
(100 %)
0 diff
(100 %id)
BQ436436 embryonal carcinoma, cell line, testis .b 815 to 1627 1 to 820       820/884
(92 %)
15 diff
(98.4 %id)
BX371402 Neuroblastoma Cot 25-normalized .b 1142 to 1520 378 to 1       378/404
(93 %)
6 diff
(98.6 %id)
BG719319 testis .c 1 to 492 1 to 507   tiling clone,   507/861
(58 %)
32 diff
(96.3 %id)
CF994666 Human Placenta, placenta .c 6 to 475 22 to 486   tiling clone,   465/486
(95 %)
20 diff
(95.9 %id)
DB468860.
matches multiple genes
hippocampus .c 239 to 658 1 to 419   tiling clone, also hits gene terkobo 419/419
(100 %)
2 diff
(99.6 %id)
DB575923 hypothalamus .d 1 to 487 1 to 489 V6G S7V L8R H9C C10I ... tiling clone, Submitted on the opposite strand 489/489
(100 %)
3 diff
(99.4 %id)
DB575953 hypothalamus .d 3 to 487 1 to 485   tiling clone, Submitted on the opposite strand 485/485
(100 %)
1 diff
(99.8 %id)
DB142741 thymus .e 1 to 522 2 to 524 exact tiling clone, capped   523/523
(100 %)
1 diff
(99.9 %id)
BX089695 pooled germ cell tumors .f 1 to 404 1 to 404 exact tiling clone, AAA   404/404
(100 %)
0 diff
(100 %id)
AI825726 pooled germ cell tumors .f 50 to 406 357 to 1       357/357
(100 %)
0 diff
(100 %id)
DB230721 trachea .g-u -10 to 583 2 to 595 N27D H57R T85A tiling clone, capped   594/594
(100 %)
13 diff
(97.9 %id)
BU170553 eye, retinoblastoma .h 1 to 872 1 to 876 N22* tiling clone,   876/876
(100 %)
16 diff
(98.2 %id)
BG499023 adenocarcinoma, Prostate .h 132 to 859 1 to 728 M2D Q6F L7S S8C Y9H ... tiling clone,   728/733
(99 %)
11 diff
(98.5 %id)
AA455609 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 265 to 708 1 to 443       443/447
(99 %)
2 diff
(99.6 %id)
AA456105 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 1301 to 1712 412 to 1   tiling clone,   412/412
(100 %)
1 diff
(99.8 %id)
T93909 liver and spleen .i-u 1 to 419 1 to 432 A15C I16N S17L A18G H19S ... tiling clone,   432/472
(91 %)
15 diff
(96.9 %id)
T93865 liver and spleen .i-u 455 to 621 167 to 1   tiling clone,   167/167
(100 %)
0 diff
(100 %id)
AL600788   .i-u 465 to 1094 1 to 630   tiling clone,   630/630
(100 %)
0 diff
(100 %id)
FN070412 breast carcinoma .i-u 667 to 783 117 to 2     Submitted on the opposite strand 116/117
(99 %)
0 diff
(100 %id)
AL698038 human skeletal muscle .j 1 to 701 1 to 700   tiling clone,   700/700
(100 %)
12 diff
(98.3 %id)
BF891722 marrow .j 697 to 1042 345 to 1 F19C L20V P21A K26N E29V ... tiling clone, Submitted on the opposite strand 345/360
(95 %)
13 diff
(96.4 %id)
BQ417008 Pancreas, Purified pancreatic islet .k-u 1 to 645 648 to 4   tiling clone, Submitted on the opposite strand 645/648
(99 %)
0 diff
(100 %id)
BU790412 Pancreas, Purified pancreatic islet .k-u 60 to 612 553 to 1     Submitted on the opposite strand 553/553
(100 %)
0 diff
(100 %id)
CK826057 Pancreas, Purified pancreatic islet .k-u 273 to 645 397 to 25       373/397
(93 %)
0 diff
(100 %id)
BG006432 placenta_normal .k-u 512 to 1037 17 to 540 W18G F28L C32G N46K C52G ... tiling clone,   524/541
(96 %)
31 diff
(94.3 %id)
BE622187 melanotic melanoma, skin .l 1 to 764 1 to 755 exact tiling clone,   755/756
(99 %)
29 diff
(96.2 %id)
BQ082470 Ascites, stomach Gene FAM116A, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BX430872 neuroblastoma Gene FAM116A, variant not shown         This clone was ignored    
AK092288 tongue Gene FAM116A, variant not shown       available from FLJ, This clone was ignored    
AX747453   Gene FAM116A, variant not shown         This clone was ignored    
DB367001   Gene FAM116A, variant not shown         Suspected internal deletion, this clone was ignored    
DA734844   Gene FAM116A, variant not shown       capped Suspected internal deletion, this clone was ignored    
BE960764 melanotic melanoma, high MDR, skin Gene FAM116A, variant not shown         Suspected internal deletion, this clone was ignored    
BE961605 melanotic melanoma, high MDR, skin Gene FAM116A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i-u, .j, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C