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Gene UGT3A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
91 supporting clones for gene UGT3A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CV422071 head_neck .a 1 to 342 1 to 343   tiling clone,   343/343
(100 %)
9 diff
(97.4 %id)
DB444586 testis .a 311 to 740 1 to 429       429/435
(98 %)
11 diff
(97.5 %id)
DB447714 testis .a 311 to 756 1 to 448       448/449
(99 %)
8 diff
(98.3 %id)
DC400870 testis .a 339 to 879 1 to 541   tiling clone,   541/541
(100 %)
0 diff
(100 %id)
NM_152404.3   .a 504 to 3380 1 to 2877 exact RefSeq, AAA   2877/2877
(100 %)
0 diff
(100 %id)
AK057066 small intestine .a 540 to 3362 1 to 2823 Y139C A378T A475V available from FLJ,   2823/2823
(100 %)
8 diff
(99.8 %id)
AK315851 kidney, tumor tissue .a 540 to 2466 1 to 1927 exact tiling clone,   1927/1927
(100 %)
0 diff
(100 %id)
DC413002 liver, tumor tissue .a 540 to 1061 1 to 522       522/522
(100 %)
1 diff
(99.9 %id)
DA915679 small intestine .a 541 to 1368 2 to 831   capped   830/850
(97 %)
11 diff
(98.8 %id)
DB174384 kidney, tumor tissue .a 541 to 1107 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
AK290809 Kidney .a 547 to 2317 1 to 1771 exact     1771/1771
(100 %)
0 diff
(100 %id)
DA632110 Kidney .a 548 to 1117 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA634870 Kidney .a 548 to 1119 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA634264 Kidney .a 550 to 1124 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
AK308046 Liver .a 597 to 2291 1 to 1694 A517P R518G K519R V520*     1694/1694
(100 %)
3 diff
(99.9 %id)
DC363006 Liver .a 597 to 1173 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
BX951484   .a 602 to 1060 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
BP274546 Kidney .a 603 to 1184 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP275078 Kidney .a 603 to 1180 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DB183268 liver, tumor tissue .a 604 to 1165 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
AW779709 Kidney .a 608 to 952 345 to 1       345/345
(100 %)
5 diff
(98.6 %id)
AI672388 Kidney .a 621 to 952 332 to 1       332/332
(100 %)
0 diff
(100 %id)
AI613123 Kidney .a 622 to 952 331 to 1       331/331
(100 %)
0 diff
(100 %id)
AI671780 Kidney .a 625 to 952 328 to 1       328/328
(100 %)
0 diff
(100 %id)
TI_44348206   .a 631 to 1384 126 to 886       761/888
(85 %)
21 diff
(97.7 %id)
BI559553 testis .a 632 to 1384 1 to 759       759/761
(99 %)
20 diff
(97.4 %id)
BC068446 testis .a 637 to 3380 1 to 2744 exact tiling clone, available from MGC, AAA   2744/2744
(100 %)
3 diff
(99.9 %id)
AW235540 Kidney .a 665 to 952 288 to 1       288/288
(100 %)
0 diff
(100 %id)
TI_1948233186   .a 689 to 1683 132 to 1119   fully sequenced,   988/1119
(88 %)
45 diff
(96.0 %id)
TI_1948233335   .a 689 to 1529 127 to 972       846/1409
(60 %)
17 diff
(98.8 %id)
TI_1948233492   .a 689 to 1538 120 to 970       851/1381
(61 %)
26 diff
(98.2 %id)
TI_1948233642   .a 689 to 1529 119 to 974       856/1438
(59 %)
37 diff
(97.5 %id)
EL736820 mixed .a 697 to 1280 1 to 584       584/584
(100 %)
0 diff
(100 %id)
AI492912 Kidney .a 700 to 952 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AI373521 Kidney .a 700 to 952 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AK091977 Kidney .a 1521 to 3362 1 to 1842   available from FLJ,   1842/1842
(100 %)
4 diff
(99.8 %id)
AX747286   .a 1521 to 3362 1 to 1842       1842/1842
(100 %)
4 diff
(99.8 %id)
DA636370 Kidney .a 1522 to 2107 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
TI_1948233336   .a 1531 to 2267 866 to 123       744/1393
(53 %)
15 diff
(99.0 %id)
TI_1948233493   .a 1538 to 2267 887 to 149       739/1369
(53 %)
31 diff
(97.8 %id)
TI_1948233643   .a 1552 to 2267 853 to 122       732/1337
(54 %)
36 diff
(97.4 %id)
TI_1948233187   .a 1653 to 2267 753 to 137   fully sequenced,   617/753
(81 %)
22 diff
(97.1 %id)
CR746121   .a 1987 to 2195 1 to 209       209/209
(100 %)
0 diff
(100 %id)
AK130038 Kidney .a 2229 to 3362 800 to 1933   available from FLJ,   1134/1933
(58 %)
6 diff
(99.7 %id)
AI016826   .a 2247 to 2633 388 to 3       386/388
(99 %)
0 diff
(100 %id)
BG431950 Kidney .a 2262 to 2972 1 to 710       710/710
(100 %)
5 diff
(99.3 %id)
AW367808 head_neck .a 2374 to 2869 1 to 495       495/495
(100 %)
10 diff
(98.0 %id)
BU621010 cell lines, Chondrosarcoma .a 2613 to 3362 768 to 19   AAA   750/750
(100 %)
4 diff
(99.5 %id)
BE144542 head_neck .a 2754 to 2872 129 to 8     Submitted on the opposite strand 122/129
(94 %)
0 diff
(100 %id)
DB321029 Kidney .a 2809 to 3362 555 to 1       555/555
(100 %)
4 diff
(99.3 %id)
DB331489 small intestine .a 2846 to 3362 516 to 1       516/518
(99 %)
10 diff
(98.1 %id)
BX104774 Kidney .a 2896 to 3372 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
AA923244 pooled .a 2902 to 3367 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
CB047217 Kidney .a 2928 to 3362 492 to 58   AAA   435/441
(98 %)
12 diff
(97.3 %id)
AI425081 pooled .a 2929 to 3362 434 to 1       434/434
(100 %)
4 diff
(99.1 %id)
DB509489 testis .a 2948 to 3362 1 to 416   AAA Submitted on the opposite strand 416/416
(100 %)
5 diff
(98.8 %id)
DB512821 testis .a 2955 to 3362 1 to 408   AAA Submitted on the opposite strand 408/408
(100 %)
2 diff
(99.6 %id)
AI244517 Kidney .a 3030 to 3380 367 to 12   AAA   356/356
(100 %)
7 diff
(98.1 %id)
AW188229 pooled .a 3122 to 3367 246 to 1       246/246
(100 %)
1 diff
(99.6 %id)
AI765927 Kidney .a 3159 to 3340 182 to 1       182/182
(100 %)
2 diff
(99.0 %id)
AK303770 liver, tumor tissue .b 1 to 1902 1 to 1902 exact tiling clone,   1902/1902
(100 %)
1 diff
(100.0 %id)
AK296136 thalamus .c 1 to 1650 1 to 1650 S340G tiling clone,   1650/1650
(100 %)
3 diff
(99.9 %id)
DC340138 thalamus .c 1 to 548 1 to 548       548/548
(100 %)
0 diff
(100 %id)
BC035012 testis .d 1 to 3097 1 to 3093 W251R tiling clone, available from MGC, AAA   3093/3093
(100 %)
6 diff
(99.9 %id)
BI463768 testis .d 1 to 529 1 to 531   available from MGC,   531/531
(100 %)
3 diff
(99.5 %id)
NM_001171873.1   .d 1 to 3097 1 to 3097 exact RefSeq, AAA   3097/3097
(100 %)
0 diff
(100 %id)
DB441980 testis .d 6 to 437 1 to 432       432/432
(100 %)
2 diff
(99.6 %id)
TI_1948074020   .d 212 to 981 894 to 125 H3N G6E Y20F S27P W251R     770/1343
(57 %)
9 diff
(99.4 %id)
TI_1948074196   .d 212 to 981 895 to 126 H3L S5R L9W W251R     770/1246
(61 %)
8 diff
(99.4 %id)
CV029784 mixed .d 221 to 772 1 to 552       552/552
(100 %)
0 diff
(100 %id)
TI_1948073673   .d 249 to 981 864 to 128       737/1370
(53 %)
10 diff
(99.3 %id)
AW173071 pooled .d 253 to 901 646 to 2       645/694
(92 %)
12 diff
(98.3 %id)
AW380602 head_neck .d 268 to 712 444 to 1       444/455
(97 %)
9 diff
(98.1 %id)
AI694348 pooled .d 320 to 901 583 to 2       582/583
(99 %)
0 diff
(100 %id)
AI015041   .d 431 to 905 478 to 4       475/478
(99 %)
0 diff
(100 %id)
AA974327 pooled germ cell tumors .d 440 to 905 470 to 6       465/470
(98 %)
0 diff
(100 %id)
AA970255 pooled .d 452 to 905 454 to 2       453/454
(99 %)
0 diff
(100 %id)
AI217703 pooled .d 459 to 905 448 to 2       447/449
(99 %)
0 diff
(100 %id)
CR740722 pooled .d 496 to 910 1 to 415   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 415/419
(99 %)
5 diff
(98.9 %id)
AI521956 Kidney .d 647 to 910 291 to 28   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 264/291
(90 %)
0 diff
(100 %id)
TI_1948073843   .d 745 to 981 363 to 127       237/261
(90 %)
0 diff
(100 %id)
DB506874 testis .d 2620 to 3097 1 to 477     Submitted on the opposite strand 477/477
(100 %)
10 diff
(98.0 %id)
AI014966   .d 2690 to 3102 413 to 1       413/413
(100 %)
4 diff
(99.1 %id)
AK125803 testis .e 1 to 5002 1 to 5002 exact tiling clone, available from FLJ,   5002/5002
(100 %)
4 diff
(100.0 %id)
DB061622 testis .e 2 to 574 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BF514925   .e 326 to 428 118 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 103/127
(81 %)
0 diff
(100 %id)
AI433413 Kidney .e 399 to 803 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
DB339316 testis .e 4468 to 5002 535 to 1       535/535
(100 %)
3 diff
(99.5 %id)
AA758115   .f-u 1 to 595 599 to 14 S3V F8I H15Q D17N F18S ... tiling clone, AAA   586/586
(100 %)
21 diff
(96.5 %id)
AW273913 pooled .f-u 364 to 597 235 to 2       234/235
(99 %)
0 diff
(100 %id)
BP332215 renal proximal tubule .g 1 to 556 1 to 555 A23V K24L I25S L26* tiling clone,   555/555
(100 %)
9 diff
(98.4 %id)
CR738701   .h 1 to 303 1 to 303 E46X E54X tiling clone,   303/303
(100 %)
0 diff
(100 %id)
BX955526   .i 1 to 383 1 to 383 exact tiling clone,   383/383
(100 %)
0 diff
(100 %id)
AI767712 Kidney .i 18 to 364 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
CR746104 Kidney .i 27 to 391 1 to 365   tiling clone, AAA   365/365
(100 %)
0 diff
(100 %id)
AL135699 testis Gene UGT3A1, variant not shown         This clone was ignored    
AL135700 testis Gene UGT3A1, variant not shown         This clone was ignored    
AV659662 corresponding non cancerous liver tissue Gene UGT3A1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DB063694 testis Gene UGT3A1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C