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Gene DLX6ASTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
156 supporting clones for gene DLX6AS back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK091367 brain .a 1 to 3096 4 to 3100 A12G tiling clone, available from FLJ,   3100/3100
(100 %)
4 diff
(99.9 %id)
AX746939   .a 1 to 3096 4 to 3100 A12G     3100/3100
(100 %)
4 diff
(99.9 %id)
BC113049 PCR rescued clones .a 1 to 649 4 to 652       652/652
(100 %)
1 diff
(99.9 %id)
BC101445 PCR rescued clones .a 1 to 649 4 to 652       652/652
(100 %)
1 diff
(99.9 %id)
BC101447 PCR rescued clones .a 1 to 649 4 to 652       652/652
(100 %)
1 diff
(99.9 %id)
BC101446 PCR rescued clones .a 1 to 649 4 to 652       652/652
(100 %)
1 diff
(99.9 %id)
BC101985 PCR rescued clones .a 1 to 649 4 to 652       652/652
(100 %)
1 diff
(99.9 %id)
DA489207 brain .a 1 to 533 4 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA787902 brain .a 1 to 577 4 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA798976 brain .a 1 to 489 4 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DA801040 brain .a 1 to 547 4 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA801639 brain .a 1 to 472 4 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA792988 brain .a 1 to 482 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
BE265315 lung, small cell carcinoma .a 30 to 574 1 to 562       562/723
(77 %)
14 diff
(98.1 %id)
BE794662 lung, small cell carcinoma .a 31 to 788 1 to 754       754/884
(85 %)
10 diff
(98.9 %id)
BE264380 lung, small cell carcinoma .a 39 to 603 1 to 565       565/565
(100 %)
0 diff
(100 %id)
BE266207 lung, small cell carcinoma .a 40 to 618 1 to 601       601/742
(80 %)
64 diff
(91.4 %id)
BE265812 lung, small cell carcinoma .a 40 to 510 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
BE794489 lung, small cell carcinoma .a 40 to 785 1 to 740       740/740
(100 %)
11 diff
(98.6 %id)
BE799811 lung, small cell carcinoma .a 743 to 1440 12 to 707       696/707
(98 %)
10 diff
(98.6 %id)
DB315290 brain .a 2503 to 3096 595 to 1   tiling clone,   595/595
(100 %)
1 diff
(99.9 %id)
AK095619 brain .b 1 to 3695 1 to 3695 H30Y available from FLJ,   3695/3695
(100 %)
4 diff
(99.9 %id)
NR_015448.1   .b 1 to 1990 1 to 1990 exact RefSeq, tiling clone,   1990/1990
(100 %)
0 diff
(100 %id)
DA502659 brain .b 2 to 560 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA791544 brain .b 7 to 576 2 to 569   capped   568/571
(99 %)
5 diff
(99.2 %id)
DA150612 amygdala .b 598 to 1187 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
BF363394 nervous_normal .b 689 to 1005 320 to 3       318/320
(99 %)
0 diff
(100 %id)
T05086   .b 778 to 1002 1 to 225       225/230
(97 %)
1 diff
(99.6 %id)
DA771730 brain .b 971 to 1549 2 to 580 H30Y capped   579/579
(100 %)
2 diff
(99.7 %id)
DA794713 brain .b 1182 to 1721 2 to 542 H30Y capped   541/541
(100 %)
3 diff
(99.5 %id)
DA784071 brain .b 1184 to 1770 2 to 588 H30Y capped   587/587
(100 %)
3 diff
(99.5 %id)
BE795674 lung, small cell carcinoma .b 1375 to 1810 339 to 771       433/996
(43 %)
6 diff
(99.4 %id)
DA678954   .b 1433 to 1926 2 to 495   capped   494/494
(100 %)
2 diff
(99.6 %id)
AI830571 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 1443 to 1975 534 to 1       534/534
(100 %)
3 diff
(99.5 %id)
BQ922838 sciatic nerve .b 1445 to 2066 1 to 622       622/980
(63 %)
5 diff
(99.5 %id)
AI089583 uterus .b 1573 to 1977 413 to 9       405/413
(98 %)
0 diff
(100 %id)
AI089581 uterus .b 1621 to 1977 365 to 9       357/365
(97 %)
0 diff
(100 %id)
BE797273 lung, small cell carcinoma .b 1647 to 2404 1 to 760       760/863
(88 %)
14 diff
(98.4 %id)
DA806133 brain .b 1653 to 2221 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BE797105 lung, small cell carcinoma .b 1664 to 2390 1 to 722       722/972
(74 %)
14 diff
(98.6 %id)
AA333151 Embryo, 8 weeks .b 1668 to 1976 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
BX952978   .b 1754 to 2186 1 to 433       433/433
(100 %)
1 diff
(99.8 %id)
AK095764 brain .b 1798 to 3695 1 to 1898   tiling clone, available from FLJ,   1898/1898
(100 %)
0 diff
(100 %id)
DA526896 brain .b 1799 to 2358 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA534321 brain .b 1839 to 2423 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BF925174 nervous_tumor .b 2043 to 2378 1 to 338       338/338
(100 %)
11 diff
(96.8 %id)
BE537494 cervix .b 2053 to 2717 7 to 692       686/870
(78 %)
42 diff
(95.2 %id)
BE793370 lung, small cell carcinoma .b 2204 to 2744 1 to 541       541/541
(100 %)
2 diff
(99.7 %id)
F12627 brain, total brain .b 2239 to 2565 1 to 327       327/327
(100 %)
0 diff
(100 %id)
R21124 whole brain .b 2240 to 2565 1 to 333       333/333
(100 %)
7 diff
(97.9 %id)
T74163 whole brain .b 2267 to 2532 1 to 268       268/268
(100 %)
4 diff
(98.6 %id)
DA782940 brain .b 2352 to 2897 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
AL119029 amygdala .b 2459 to 3012 1 to 554       554/554
(100 %)
5 diff
(99.1 %id)
BE793417 lung, small cell carcinoma .b 2564 to 3291 88 to 814       727/926
(78 %)
18 diff
(98.1 %id)
DA526546 brain .b 2738 to 3295 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AK055423 brain .b 2855 to 4961 1 to 2105   available from FLJ,   2105/2105
(100 %)
2 diff
(100.0 %id)
DA515453 brain .b 2856 to 3412 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BE792834 lung, small cell carcinoma .b 2896 to 3632 1 to 737       737/737
(100 %)
1 diff
(99.9 %id)
CR745904   .b 2999 to 3708 710 to 1     Submitted on the opposite strand 710/710
(100 %)
3 diff
(99.6 %id)
AW245919 lung, small cell carcinoma .b 3140 to 3695 69 to 626   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 558/626
(89 %)
6 diff
(99.1 %id)
DB315945 brain .b 3154 to 3695 542 to 1       542/542
(100 %)
0 diff
(100 %id)
DB326668 brain .b 3160 to 3695 536 to 1       536/536
(100 %)
0 diff
(100 %id)
DB317502 brain .b 3168 to 3695 528 to 1       528/528
(100 %)
0 diff
(100 %id)
AI469952 pooled .b 3180 to 3694 515 to 1       515/515
(100 %)
1 diff
(99.9 %id)
CR626626 fetal brain .b 3243 to 4905 1 to 1663   tiling clone,   1663/1663
(100 %)
0 diff
(100 %id)
AW245662 lung, small cell carcinoma .b 3246 to 3705 461 to 1   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 461/461
(100 %)
1 diff
(99.8 %id)
AI982549 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3278 to 3697 421 to 1       421/421
(100 %)
5 diff
(98.9 %id)
BQ025929 placenta .b 3278 to 3695 436 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 418/418
(100 %)
0 diff
(100 %id)
R62439 whole brain .b 3302 to 3703 415 to 1       415/486
(85 %)
13 diff
(97.4 %id)
F10243 brain, total brain .b 3338 to 3695 358 to 1       358/358
(100 %)
0 diff
(100 %id)
DA789361 brain .b 3457 to 4031 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BX477952   .b 3497 to 4032 1 to 536       536/536
(100 %)
2 diff
(99.7 %id)
AA332542 Embryo, 8 weeks .b 3720 to 4055 1 to 341       341/341
(100 %)
7 diff
(98.0 %id)
AW965431   .b 3721 to 4295 1 to 580       580/581
(99 %)
15 diff
(97.5 %id)
BI093317 cervix .b 3726 to 4127 1 to 402       402/405
(99 %)
3 diff
(99.3 %id)
C15284   .b 3741 to 4260 1 to 518       518/518
(100 %)
4 diff
(99.3 %id)
D60126 brain .b 3741 to 4134 1 to 392       392/394
(99 %)
4 diff
(99.0 %id)
D80906 brain .b 3741 to 4047 1 to 307       307/307
(100 %)
1 diff
(99.7 %id)
D60709 brain .b 3741 to 4045 1 to 306       306/306
(100 %)
2 diff
(99.4 %id)
D81276 brain .b 3741 to 4044 1 to 303       303/303
(100 %)
3 diff
(99.1 %id)
D81489 brain .b 3741 to 4059 1 to 318       318/318
(100 %)
3 diff
(99.1 %id)
D61235   .b 3741 to 4034 1 to 292       292/292
(100 %)
10 diff
(96.6 %id)
D81543 brain .b 3741 to 4238 1 to 493       493/493
(100 %)
7 diff
(98.6 %id)
D81696 brain .b 3741 to 4030 1 to 288       288/288
(100 %)
5 diff
(98.3 %id)
D61442   .b 3741 to 4078 1 to 335       335/335
(100 %)
3 diff
(99.2 %id)
D81756 brain .b 3741 to 4082 1 to 340       340/340
(100 %)
4 diff
(98.9 %id)
D61474   .b 3741 to 4022 1 to 277       277/277
(100 %)
8 diff
(97.2 %id)
D81790 brain .b 3741 to 3994 1 to 251       251/251
(100 %)
4 diff
(98.5 %id)
D81797 brain .b 3741 to 4106 1 to 365       365/365
(100 %)
2 diff
(99.5 %id)
CR602612 adult brain .b 3753 to 4931 1 to 1179       1179/1179
(100 %)
0 diff
(100 %id)
BX463429 adult brain, brain .b 3753 to 4758 1 to 1001   fully sequenced,   1001/1001
(100 %)
11 diff
(99.0 %id)
AL540166 brain, fetal brain .b 3765 to 3888 523 to 648       594/648
(91 %)
5 diff
(99.3 %id)
AL540165 brain, fetal brain .b 3892 to 4374 1063 to 585       479/1092
(43 %)
0 diff
(100 %id)
AA626681 lung, lung carcinoma .b 3929 to 4307 1 to 379       379/379
(100 %)
0 diff
(100 %id)
D61467   .b 4000 to 4312 1 to 314       314/314
(100 %)
1 diff
(99.7 %id)
AA129344 lung, lung carcinoma .b 4013 to 4542 1 to 530   fully sequenced,   530/530
(100 %)
4 diff
(99.3 %id)
D61044   .b 4388 to 4755 1 to 368       368/368
(100 %)
1 diff
(99.8 %id)
DB316785 brain .b 4395 to 4961 567 to 1       567/567
(100 %)
0 diff
(100 %id)
DB326343 brain .b 4417 to 4966 550 to 1       550/550
(100 %)
0 diff
(100 %id)
AA129217 lung, lung carcinoma .b 4512 to 4969 457 to 1   fully sequenced,   457/457
(100 %)
3 diff
(99.4 %id)
AW247881 lung, small cell carcinoma .b 4515 to 4975 474 to 14       461/474
(97 %)
0 diff
(100 %id)
D80582 brain .b 4571 to 4961 389 to 1       389/389
(100 %)
3 diff
(99.3 %id)
D80905 brain .b 4589 to 4961 372 to 1       372/372
(100 %)
6 diff
(98.4 %id)
D60789   .b 4590 to 4961 374 to 1       374/374
(100 %)
3 diff
(99.2 %id)
AW615701.
matches multiple genes
lung, small cell carcinoma .b 4620 to 4978 365 to 7     also hits gene MAPK4 359/365
(98 %)
0 diff
(100 %id)
D81045 brain .b 4630 to 4959 331 to 2       330/331
(99 %)
0 diff
(100 %id)
AA829282 lung, small cell carcinoma .b 4641 to 5068 444 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 428/428
(100 %)
2 diff
(99.6 %id)
AI811996 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 4694 to 4961 282 to 15   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 268/268
(100 %)
7 diff
(97.4 %id)
BX463428 adult brain, brain .b 4728 to 4931 192 to 1   fully sequenced,   192/192
(100 %)
2 diff
(99.0 %id)
DA495802 brain .c 1 to 579 2 to 581   tiling clone, capped   580/580
(100 %)
2 diff
(99.7 %id)
DA779121 brain .c 2 to 571 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
AW245528 lung, small cell carcinoma .c 59 to 604 10 to 555   tiling clone,   546/555
(98 %)
7 diff
(98.8 %id)
DA770654 brain .c 60 to 645 2 to 587   tiling clone, capped   586/586
(100 %)
1 diff
(99.9 %id)
AW245971 lung, small cell carcinoma .c 1975 to 2577 604 to 1 exact tiling clone,   604/604
(100 %)
3 diff
(99.6 %id)
DA514253 brain .d 1 to 541 6 to 547   tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
DA778358 brain .d 1 to 575 2 to 578   tiling clone, capped   577/577
(100 %)
3 diff
(99.5 %id)
DB316682 brain .d 1944 to 2494 553 to 1 exact tiling clone,   553/555
(99 %)
4 diff
(99.3 %id)
DA495437 brain .e 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DA799522 brain .e 7 to 551 8 to 552   capped   545/545
(100 %)
1 diff
(99.9 %id)
BX951628   .e 28 to 684 1 to 657 exact tiling clone,   657/657
(100 %)
1 diff
(99.9 %id)
AK309768 brain .e 29 to 1318 1 to 1290 T29A tiling clone,   1290/1290
(100 %)
3 diff
(99.8 %id)
DA810194 brain .e 29 to 582 2 to 556 exact capped   555/555
(100 %)
2 diff
(99.7 %id)
DA335926 hippocampus .e 30 to 622 2 to 594 exact capped   593/593
(100 %)
1 diff
(99.9 %id)
DA492953 brain .e 30 to 606 2 to 578 exact capped   577/577
(100 %)
0 diff
(100 %id)
DA514574 brain .e 30 to 562 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
DA772830 brain .e 30 to 592 2 to 565 T29A capped   564/564
(100 %)
2 diff
(99.7 %id)
DA798127 brain .e 30 to 603 2 to 576 exact capped   575/575
(100 %)
1 diff
(99.9 %id)
DA801759 brain .e 30 to 514 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DA804664 brain .e 30 to 572 2 to 544 exact capped   543/543
(100 %)
0 diff
(100 %id)
DA805875 brain .e 30 to 574 2 to 547 exact capped   546/546
(100 %)
1 diff
(99.9 %id)
DA509685 brain .e 34 to 619 2 to 587 exact capped   586/586
(100 %)
0 diff
(100 %id)
DA798543 brain .e 40 to 595 2 to 557 exact capped   556/556
(100 %)
0 diff
(100 %id)
DA805616 brain .e 40 to 604 2 to 566 exact capped   565/565
(100 %)
0 diff
(100 %id)
DA807378 brain .e 58 to 594 2 to 540 exact capped   539/539
(100 %)
5 diff
(99.1 %id)
BX643287   .e 63 to 633 1 to 572 exact     572/572
(100 %)
2 diff
(99.7 %id)
DA803310 brain .e 64 to 611 2 to 550 exact capped   549/549
(100 %)
1 diff
(99.9 %id)
DA797841 brain .e 65 to 628 2 to 565 exact capped   564/564
(100 %)
0 diff
(100 %id)
DA799062 brain .e 65 to 599 2 to 536 exact capped   535/535
(100 %)
1 diff
(99.9 %id)
DA801238 brain .e 65 to 606 2 to 543 exact capped   542/542
(100 %)
0 diff
(100 %id)
DA804122 brain .e 65 to 609 2 to 546 exact capped   545/545
(100 %)
0 diff
(100 %id)
DA810231 brain .e 69 to 463 2 to 396   capped   395/395
(100 %)
0 diff
(100 %id)
DA793435 brain .e 105 to 636 2 to 533 exact capped   532/532
(100 %)
0 diff
(100 %id)
DA800546 brain .e 105 to 655 2 to 553 exact capped   552/552
(100 %)
1 diff
(99.9 %id)
DA792023 brain .e 107 to 636 2 to 532 exact capped   531/531
(100 %)
1 diff
(99.9 %id)
DA806928 brain .e 137 to 701 2 to 566 exact capped   565/565
(100 %)
0 diff
(100 %id)
AK308769 amygdala .e 196 to 1377 1 to 1182 exact tiling clone,   1182/1182
(100 %)
2 diff
(99.9 %id)
DA803254 brain .e 196 to 742 2 to 548 exact capped   547/547
(100 %)
1 diff
(99.9 %id)
DA191790 amygdala .e 197 to 810 2 to 615 exact capped   614/614
(100 %)
1 diff
(99.9 %id)
DA524647 brain .e 197 to 751 2 to 556 exact capped   555/555
(100 %)
0 diff
(100 %id)
DA528397 brain .e 197 to 764 2 to 569 exact capped   568/568
(100 %)
0 diff
(100 %id)
DA775315 brain .e 197 to 767 2 to 572 exact capped   571/572
(99 %)
2 diff
(99.7 %id)
DA788939 brain .e 197 to 764 2 to 569 exact capped   568/568
(100 %)
0 diff
(100 %id)
DA800241 brain .e 197 to 753 2 to 559 exact capped   558/558
(100 %)
3 diff
(99.5 %id)
DA806627 brain .e 197 to 766 2 to 571 exact capped   570/570
(100 %)
0 diff
(100 %id)
DA807415 brain .e 197 to 754 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
DA808146 brain .e 197 to 765 2 to 570 exact capped   569/569
(100 %)
1 diff
(99.9 %id)
DA808709 brain .e 197 to 721 2 to 525 exact capped   524/524
(100 %)
1 diff
(99.9 %id)
DA775135 brain .e 200 to 758 2 to 560 exact capped   559/559
(100 %)
0 diff
(100 %id)
CA865377   .f 1 to 282 282 to 1 exact tiling clone, Submitted on the opposite strand 282/282
(100 %)
0 diff
(100 %id)
DA783987 brain .f 23 to 547 2 to 526 exact tiling clone, capped   525/525
(100 %)
3 diff
(99.5 %id)
DA502345 brain .f 28 to 591 2 to 567 exact capped   566/566
(100 %)
4 diff
(99.3 %id)
BE263812 lung, small cell carcinoma .f 68 to 768 1 to 696   tiling clone,   696/697
(99 %)
7 diff
(99.0 %id)
DA530021 brain .f 89 to 632 2 to 547   capped   546/546
(100 %)
7 diff
(98.8 %id)
DA839127 placenta .g-u 1 to 315 2 to 316   tiling clone, capped   315/315
(100 %)
1 diff
(99.7 %id)
DA236606 brain .g-u 65 to 655 2 to 592 exact tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
DA191697 amygdala .h 1 to 610 2 to 611 exact tiling clone, capped   610/610
(100 %)
1 diff
(99.9 %id)
DA517735 brain .h 1 to 469 2 to 470 exact capped   469/469
(100 %)
0 diff
(100 %id)
DA787517 brain .h 1 to 568 12 to 579 exact tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
DA801483 brain .h 1 to 485 2 to 486 exact capped   485/485
(100 %)
0 diff
(100 %id)
DA811181 brain .i 1 to 564 2 to 566 exact tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
BE592065 brain Gene DLX6AS, variant not shown              
BQ933397 sciatic nerve Gene DLX6AS, variant not shown         This clone was ignored    
DB326848 brain Gene DLX6AS, variant not shown              
DA799093 brain Gene DLX6AS, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue