To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene METT5D1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
123 supporting clones for gene METT5D1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB458698.
matches multiple genes
testis .a 1 to 439 5 to 443   tiling clone, Submitted on the opposite strand, also hits gene skormee 443/443
(100 %)
0 diff
(100 %id)
NM_001113528.1   .a 1 to 4344 2 to 4345 exact RefSeq,   4345/4345
(100 %)
0 diff
(100 %id)
DA800481 brain .a 1 to 563 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DB443387 testis .a 79 to 539 1 to 461       461/461
(100 %)
4 diff
(99.2 %id)
DB450187 testis .a 79 to 524 1 to 446       446/449
(99 %)
3 diff
(99.4 %id)
DA245449 brain .a 98 to 645 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA148521 amygdala .a 114 to 681 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA804998 brain .a 138 to 705 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA805018 brain .a 138 to 706 2 to 569   capped   568/569
(99 %)
4 diff
(99.3 %id)
DB131339 thymus .a 138 to 682 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
BE166336 head_neck .a 310 to 870 615 to 55     Submitted on the opposite strand 561/616
(91 %)
1 diff
(99.9 %id)
DB221877 trachea .a 325 to 889 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BF959925 nervous_normal .a 329 to 566 1 to 237       237/237
(100 %)
4 diff
(98.4 %id)
DA755826   .a 329 to 915 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
BF943255 nervous_normal .a 335 to 671 28 to 371       344/371
(92 %)
14 diff
(96.3 %id)
BF963846 nervous_normal .a 341 to 857 1 to 517       517/517
(100 %)
3 diff
(99.5 %id)
BI035258 nervous_normal .a 341 to 566 1 to 225       225/225
(100 %)
1 diff
(99.6 %id)
DA475624   .a 349 to 900 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA997030   .a 349 to 913 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB132754 thymus .a 349 to 891 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB212939 trachea .a 349 to 853 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
AL832668 human bone marrow .a 350 to 3771 4 to 3425 G396R tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3422/3424
(99 %)
4 diff
(99.9 %id)
DA034259   .a 350 to 870 2 to 522   capped   521/530
(98 %)
6 diff
(98.9 %id)
BQ945878 leiomyosarcoma, uterus .a 350 to 1232 1 to 885       885/921
(96 %)
17 diff
(98.2 %id)
DA239326 brain .a 351 to 924 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA456845 tongue, tumor tissue .a 351 to 899 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA459693 tongue, tumor tissue .a 351 to 924 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA600408   .a 351 to 903 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA851965 placenta .a 351 to 899 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DN999260   .a 352 to 996 1 to 645       645/646
(99 %)
7 diff
(99.0 %id)
DB075676 testis .a 355 to 931 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CB107014.
matches multiple genes
Liver .a 358 to 848 1 to 491   tiling clone, also hits gene METT5D2 491/491
(100 %)
1 diff
(99.8 %id)
DA223282.
matches multiple genes
brain .a 364 to 922 2 to 560   tiling clone, capped also hits gene METT5D2 559/559
(100 %)
1 diff
(99.9 %id)
BE782829 eye, retinoblastoma .a 370 to 1053 1 to 674       676/922
(73 %)
17 diff
(98.2 %id)
BF956699 nervous_normal .a 445 to 724 549 to 271       279/549
(50 %)
0 diff
(100 %id)
BM550252 melanotic melanoma, skin .a 994 to 1967 1 to 980       980/1102
(88 %)
25 diff
(97.8 %id)
CR746452 melanotic melanoma, skin .a 1007 to 1471 1 to 465       465/465
(100 %)
0 diff
(100 %id)
AL558515 T cells from T cell leukemia .a 1047 to 1972 1 to 924   tiling clone,   924/924
(100 %)
3 diff
(99.7 %id)
DA712361   .a 1097 to 1647 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BM477529 lymph, lymphoma, cell line .a 1288 to 2285 1 to 996       996/1053
(94 %)
35 diff
(96.7 %id)
BI258036 cervical carcinoma cell line, cervix .a 1334 to 1962 1 to 634       634/785
(80 %)
20 diff
(97.5 %id)
AL580319 T cells from T cell leukemia .a 1412 to 2384 970 to 1       970/975
(99 %)
27 diff
(97.3 %id)
EH324432   .a 1513 to 1593 1 to 81       81/90
(90 %)
3 diff
(96.7 %id)
BX389892   .a 1827 to 2414 1 to 586       586/593
(98 %)
7 diff
(98.9 %id)
CB104716.
matches multiple genes
Ascites, stomach .a 1867 to 2017 1 to 152   tiling clone, also hits gene stysmerby 152/152
(100 %)
3 diff
(98.1 %id)
BQ437588 eye, retinoblastoma .a 1875 to 2679 12 to 833       822/902
(91 %)
24 diff
(97.4 %id)
DB508325 testis .a 1905 to 2320 1 to 416     Submitted on the opposite strand 416/416
(100 %)
0 diff
(100 %id)
DB515800 testis .a 1940 to 2320 1 to 382     Submitted on the opposite strand 382/382
(100 %)
7 diff
(98.2 %id)
DN919721   .a 2037 to 2414 457 to 80   AAA   378/378
(100 %)
9 diff
(97.7 %id)
BE892490 melanotic melanoma, skin .a 2048 to 2415 1 to 368       368/368
(100 %)
2 diff
(99.5 %id)
AW615337 2 pooled high-grade transitional celltumors, genitourinary tract .a 2049 to 2414 366 to 1       366/366
(100 %)
0 diff
(100 %id)
BQ221167 large cell carcinoma, lung .a 2062 to 2556 1 to 495       495/960
(51 %)
12 diff
(98.8 %id)
AW081066 colon, moderately differentiated adenocarcinoma .a 2081 to 2414 350 to 17   AAA   334/334
(100 %)
2 diff
(99.5 %id)
AI637581 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2087 to 2575 1 to 489     Submitted on the opposite strand 489/489
(100 %)
1 diff
(99.8 %id)
CN354138 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2447 to 3098 1 to 652   tiling clone,   652/652
(100 %)
0 diff
(100 %id)
DW449263 Liver .a 2696 to 2884 16 to 204       189/204
(92 %)
6 diff
(97.1 %id)
DB324102   .a 3244 to 3773 531 to 1   tiling clone,   531/537
(98 %)
2 diff
(99.7 %id)
DB314842   .a 3732 to 4233 504 to 1   tiling clone,   504/504
(100 %)
2 diff
(99.7 %id)
BC066900 Brain, hippocampus .b -8 to 2303 1 to 2308 N31K H233N tiling clone, available from MGC, AAA   2308/2308
(100 %)
8 diff
(99.7 %id)
BC030997 Testis, embryonal carcinoma .b 201 to 2588 1 to 2388 N31K P191S tiling clone, available from MGC, AAA   2388/2388
(100 %)
6 diff
(99.8 %id)
EL735744 mixed .b 530 to 1138 1 to 609       609/609
(100 %)
2 diff
(99.7 %id)
TI_1948221299   .b 530 to 836 140 to 446   fully sequenced,   307/336
(91 %)
7 diff
(98.0 %id)
TI_1948220793.
matches multiple genes
  .b 597 to 1167 693 to 121     also hits gene METT5D2 573/1335
(42 %)
7 diff
(99.5 %id)
TI_1948221134.
matches multiple genes
  .b 759 to 1167 529 to 121     also hits gene METT5D2 409/436
(93 %)
1 diff
(99.8 %id)
TI_1948220963.
matches multiple genes
  .b 769 to 1167 517 to 119     also hits gene METT5D2 399/427
(93 %)
1 diff
(99.8 %id)
TI_1948221300   .b 806 to 1167 484 to 123   fully sequenced,   362/390
(92 %)
1 diff
(99.8 %id)
NM_152636.2   .c 1 to 4415 2 to 4416 exact RefSeq,   4416/4416
(100 %)
0 diff
(100 %id)
AK091298   .c 348 to 4304 1 to 3959 N31K M194V tiling clone, available from FLJ,   3959/3959
(100 %)
4 diff
(99.9 %id)
AX746902   .c 348 to 4304 1 to 3959 N31K M194V     3959/3959
(100 %)
4 diff
(99.9 %id)
CV406956 breast_normal .c 1112 to 1524 16 to 426       411/426
(96 %)
6 diff
(98.6 %id)
CV406981 breast_normal .c 1122 to 1530 418 to 5     Submitted on the opposite strand 414/419
(98 %)
7 diff
(98.4 %id)
CR601005 T cells (Jurkat cell line) Cot10-normalized .d 1 to 1377 1 to 1377 exact tiling clone,   1377/1377
(100 %)
0 diff
(100 %id)
AL713720 lymph node .e-u 1 to 1537 1 to 1537 exact tiling clone, available from DKFZ, AAA   1537/1537
(100 %)
0 diff
(100 %id)
DA804317 brain .f-u 1 to 539 2 to 540   tiling clone, to resequence, capped   539/539
(100 %)
0 diff
(100 %id)
AI702097 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .f-u 1247 to 1732 486 to 1   tiling clone,   486/486
(100 %)
1 diff
(99.8 %id)
BE709976 head_neck .f-u 1305 to 1779 1 to 475       475/475
(100 %)
2 diff
(99.6 %id)
TI_149296327   .f-u 1437 to 2251 899 to 101   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 799/951
(84 %)
17 diff
(98.3 %id)
BG230493 moderate to poorly differentiated invasivecarcinoma, tongue .f-u 1502 to 1621 120 to 1       120/120
(100 %)
3 diff
(97.5 %id)
AW977840   .f-u 1696 to 2250 554 to 1     Submitted on the opposite strand 554/554
(100 %)
5 diff
(99.1 %id)
AI762815 B-cell, chronic lymphotic leukemia .f-u 1713 to 2252 540 to 1       540/540
(100 %)
7 diff
(98.8 %id)
AV719253.
matches multiple genes
corresponding non cancerous liver tissue .f-u 1741 to 2264 524 to 1     Submitted on the opposite strand, also hits gene royflarbu 524/524
(100 %)
6 diff
(98.9 %id)
AA814968 germinal center B cell .f-u 1771 to 2257 483 to 1       483/483
(100 %)
6 diff
(98.8 %id)
CN354137 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f-u 1801 to 2251 1 to 451   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 451/451
(100 %)
0 diff
(100 %id)
BU615240 Bone, Human Chondrosarcoma Cell Line .f-u 1801 to 2251 469 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 451/451
(100 %)
3 diff
(99.4 %id)
AI004348   .f-u 1865 to 2258 394 to 1   tiling clone,   394/394
(100 %)
0 diff
(100 %id)
AW193426 adenocarcinoma, Pancreas .f-u 1885 to 2251 399 to 33   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 367/367
(100 %)
11 diff
(97.1 %id)
AW276794 ovary, papillary serous ovarian metastasis .f-u 1923 to 2195 34 to 306     Submitted on the opposite strand 273/306
(89 %)
6 diff
(98.1 %id)
AI569925 adenocarcinoma, Pancreas .f-u 1936 to 2263 328 to 1       328/328
(100 %)
0 diff
(100 %id)
BQ019970 Chondrosarcoma, Left Pubic Bone .f-u 1978 to 2625 670 to 22 R45K R47E R48K AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 649/652
(99 %)
0 diff
(100 %id)
AI933804 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f-u 1979 to 2261 285 to 1       285/285
(100 %)
2 diff
(99.3 %id)
N77114 multiple sclerosis lesions .f-u 2134 to 2451 1 to 322 E6X S37X Q38X G44K R45E ... fully sequenced,   322/322
(100 %)
8 diff
(97.6 %id)
BU615554 Bone, Enchondroma cell line .f-u 2190 to 2822 660 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 642/642
(100 %)
9 diff
(98.6 %id)
AW967712   .f-u 2253 to 2931 680 to 1   tiling clone, Submitted on the opposite strand 680/733
(92 %)
6 diff
(99.2 %id)
DB327106 brain .f-u 2270 to 2822 553 to 1   to resequence,   553/553
(100 %)
0 diff
(100 %id)
CD677687 eye, Trabecular meshwork .f-u 2279 to 2822 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
AW967707   .f-u 2324 to 2930 608 to 2     Submitted on the opposite strand 607/609
(99 %)
0 diff
(100 %id)
AA016165.
matches multiple genes
eye, retina .f-u 2340 to 2822 485 to 1     Submitted on the opposite strand, also hits gene feefey 485/489
(99 %)
4 diff
(99.2 %id)
AI332808 lung .f-u 2356 to 2822 468 to 2       467/468
(99 %)
0 diff
(100 %id)
BX282013 eye, retina .f-u 2365 to 2822 472 to 15   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 458/458
(100 %)
0 diff
(100 %id)
CR736569   .f-u 2367 to 2822 472 to 15   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 458/458
(100 %)
3 diff
(99.4 %id)
AI971138 Prostate .f-u 2380 to 2819 453 to 14       440/453
(97 %)
0 diff
(100 %id)
AI433420 Kidney .f-u 2384 to 2822 439 to 1       439/439
(100 %)
0 diff
(100 %id)
N62069 multiple sclerosis lesions .f-u 2421 to 2823 408 to 1   fully sequenced,   408/408
(100 %)
6 diff
(98.6 %id)
AA251906.
matches multiple genes
germinal center B cell .f-u 2543 to 2897 355 to 1     also hits gene sorgabo 355/355
(100 %)
1 diff
(99.8 %id)
AA778108 heart .f-u 2604 to 2822 229 to 11   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 219/219
(100 %)
0 diff
(100 %id)
AK091261 tongue, tumor tissue .g-u 1 to 2347 2 to 2356   tiling clone, available from FLJ,   2356/2356
(100 %)
7 diff
(99.8 %id)
DA446946 tongue, tumor tissue .g-u 1 to 558 2 to 567   capped   566/566
(100 %)
6 diff
(99.0 %id)
DB314024 tongue, tumor tissue .g-u 1827 to 2347 522 to 1   tiling clone,   522/522
(100 %)
1 diff
(99.9 %id)
CD654215 Embryonic Stem cells .h 1 to 815 11 to 823 exact tiling clone,   813/826
(98 %)
12 diff
(98.6 %id)
BP251735 hippocampus .h 491 to 1079 1 to 588 exact tiling clone,   588/588
(100 %)
2 diff
(99.7 %id)
CB048280 Prostate .i 1 to 292 12 to 303   tiling clone,   292/303
(96 %)
7 diff
(97.7 %id)
BC105287 Brain, glioblastoma .i 180 to 1011 1 to 832 N31K AAA   832/832
(100 %)
6 diff
(99.3 %id)
BF246643 brain, glioblastoma .i 183 to 899 1 to 720 C8G W18G L19C E20G S21I ...     718/750
(95 %)
42 diff
(94.4 %id)
AA398002   .i 230 to 532 1 to 304   tiling clone, fully sequenced,   304/304
(100 %)
0 diff
(100 %id)
CB048279 Prostate .i 400 to 1008 640 to 32   AAA   609/609
(100 %)
0 diff
(100 %id)
AV714386   .i 426 to 1017 1 to 592   tiling clone, AAA   592/592
(100 %)
3 diff
(99.5 %id)
AA399078   .i 502 to 845 345 to 2   fully sequenced,   344/345
(99 %)
0 diff
(100 %id)
BX095953 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .i 846 to 1012 181 to 15   AAA   167/202
(82 %)
0 diff
(100 %id)
AI687680 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .i 885 to 1012 128 to 1       128/128
(100 %)
1 diff
(99.3 %id)
BG721730 testis .j 1 to 792 1 to 792 I5L K14Q K26T tiling clone,   792/798
(99 %)
10 diff
(98.8 %id)
BI462918 testis .j 7 to 655 1 to 651       651/836
(77 %)
23 diff
(97.3 %id)
DB049912 testis .j 29 to 569 2 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
TI_44165644   .j 44 to 655 141 to 738       598/749
(79 %)
22 diff
(97.1 %id)
BI545566 brain, hippocampus .j 46 to 655 1 to 598   tiling clone, available from MGC,   598/609
(98 %)
24 diff
(96.1 %id)
DA864077 placenta .j 58 to 624 2 to 568   tiling clone, capped   567/567
(100 %)
2 diff
(99.7 %id)
DN991943 brain, whole brain .j 68 to 505 1 to 438       438/438
(100 %)
3 diff
(99.4 %id)
DA381879 thalamus .j 77 to 646 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DB209739 trachea .j 83 to 626 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DR761185 embryonic stem .k 1 to 653 1 to 653 exact tiling clone,   653/653
(100 %)
0 diff
(100 %id)
T97153 liver and spleen Gene METT5D1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
T97154 liver and spleen Gene METT5D1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u, .g-u, .h, .i, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C