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Gene FAM109ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
82 supporting clones for gene FAM109A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK093052 testis .a 1 to 2317 1 to 2311 G156M G157A G158L M159P A160Q ... tiling clone, available from FLJ,   2311/2311
(100 %)
8 diff
(99.7 %id)
AX747887   .a 1 to 2317 1 to 2311 G156M G157A G158L M159P A160Q ...     2311/2311
(100 %)
8 diff
(99.7 %id)
DB022359 testis .a 2 to 465 2 to 465   capped   464/464
(100 %)
0 diff
(100 %id)
DB055268 testis .a 2 to 560 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DB336066 testis .a 1785 to 2313 536 to 5       532/536
(99 %)
0 diff
(100 %id)
CX758147 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1 to 718 1 to 718   tiling clone,   718/718
(100 %)
0 diff
(100 %id)
NM_001177996.1   .b 1 to 3256 1 to 3256 exact RefSeq,   3256/3256
(100 %)
0 diff
(100 %id)
DA694233   .c 1 to 567 2 to 559 Q6R G162M G163A G164L M165P ... tiling clone, capped Suspected internal deletion 558/558
(100 %)
1 diff
(99.9 %id)
BM473241 duodenal adenocarcinoma, cell line, small intestine .d 1 to 496 16 to 511   tiling clone,   496/1231
(40 %)
22 diff
(98.3 %id)
NM_144671.4   .d 7 to 3174 1 to 3168 exact RefSeq,   3168/3168
(100 %)
0 diff
(100 %id)
CN302571 embryonic stem cells, cell lines H1, H7, andH9 .d 96 to 692 1 to 596       596/596
(100 %)
4 diff
(99.4 %id)
DA922517 small intestine .d 101 to 625 2 to 525   capped   524/524
(100 %)
2 diff
(99.7 %id)
BC034809 Brain, anaplastic oligodendroglioma with1p/19q loss .d 106 to 3144 1 to 3039 exact tiling clone, available from MGC, AAA   3039/3039
(100 %)
1 diff
(100.0 %id)
BG913211 anaplastic oligodendroglioma with 1p/19qloss, brain .d 106 to 762 1 to 665       665/729
(91 %)
17 diff
(97.7 %id)
AW975625   .d 2746 to 3290 1 to 546   tiling clone,   546/546
(100 %)
9 diff
(98.4 %id)
NM_001177997.1   .e 1 to 3149 1 to 3149 exact RefSeq,   3149/3149
(100 %)
0 diff
(100 %id)
DA758541   .e 24 to 596 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
DA707326   .e 47 to 609 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA684267   .e 52 to 593 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
BU501318 eye, normal pigmented retinal epithelium .e 347 to 1067 1 to 725   tiling clone,   725/919
(78 %)
13 diff
(98.6 %id)
AA975073 Kidney .e 475 to 873 423 to 26   AAA   398/409
(97 %)
0 diff
(100 %id)
BQ918156 sciatic nerve .e 579 to 1111 1 to 538   tiling clone,   538/977
(55 %)
20 diff
(98.0 %id)
AA582307 Kidney, kidney tumor .e 1074 to 1414 1 to 347   tiling clone, Submitted on the opposite strand 347/347
(100 %)
8 diff
(97.7 %id)
CX785083 human embryonic stem cells .e 1117 to 1640 1 to 524   tiling clone,   524/524
(100 %)
1 diff
(99.9 %id)
BE273018 Kidney, renal cell adenocarcinoma .e 1222 to 1905 8 to 700       693/722
(95 %)
43 diff
(94.1 %id)
DB004932 breast, tumor tissue .e 1247 to 1793 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BI197060 brain, neuroblastoma .e 1272 to 2076 1 to 792       792/793
(99 %)
40 diff
(95.0 %id)
BG468865 adenocarcinoma cell line, colon .e 1280 to 1708 1 to 434       434/1035
(41 %)
10 diff
(99.1 %id)
DA950988 Spleen .e 1358 to 1918 2 to 562   tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
BF843226 head_neck .e 1385 to 1476 1 to 91       91/102
(89 %)
6 diff
(94.2 %id)
BF759142 colon .e 1407 to 1509 18 to 117       100/117
(85 %)
6 diff
(94.9 %id)
BE312645 brain, neuroblastoma .e 1684 to 1892 428 to 644       563/644
(87 %)
25 diff
(96.2 %id)
CD637129   .e 1702 to 2383 9 to 669       661/671
(98 %)
30 diff
(95.6 %id)
CN302572 embryonic stem cells, cell lines H1, H7, andH9 .e 1716 to 2415 1 to 703       703/703
(100 %)
2 diff
(99.8 %id)
BG393241 embryonal carcinoma, cell line, testis .e 1757 to 2452 1 to 690   tiling clone,   690/690
(100 %)
8 diff
(98.9 %id)
BG954780 colon .e 1816 to 2200 394 to 1       394/403
(97 %)
18 diff
(95.6 %id)
CU450076 epidermis .e 1874 to 1989 131 to 16     Submitted on the opposite strand 116/142
(81 %)
0 diff
(100 %id)
CD637128   .e 1975 to 2621 650 to 4       647/650
(99 %)
0 diff
(100 %id)
BG820145 anaplastic oligodendroglioma with 1p/19qloss, brain .e 2022 to 2804 1 to 790       790/790
(100 %)
10 diff
(98.8 %id)
CD671724 eye, Iris .e 2117 to 2712 1 to 596   tiling clone,   596/596
(100 %)
2 diff
(99.7 %id)
BF514876   .e 2165 to 2581 434 to 18   AAA   417/417
(100 %)
1 diff
(99.8 %id)
BF435061 fibrotheoma, ovary .e 2176 to 2582 409 to 3       407/409
(99 %)
0 diff
(100 %id)
BM558909 amelanotic melanoma, cell line, skin .e 2207 to 3064 1 to 861       861/963
(89 %)
18 diff
(98.2 %id)
BM558949 amelanotic melanoma, cell line, skin .e 2207 to 3005 1 to 804       804/1027
(78 %)
27 diff
(97.4 %id)
TI_149315860   .e 2210 to 3119 986 to 85   AAA   902/1033
(87 %)
25 diff
(97.6 %id)
BM724337 eye, fetal eye .e 2255 to 2694 1 to 441   fully sequenced,   441/441
(100 %)
4 diff
(99.1 %id)
BQ326692 colon_normal .e 2289 to 2619 353 to 21       333/363
(91 %)
0 diff
(100 %id)
BF869986 lung_tumor .e 2299 to 2538 240 to 1     Submitted on the opposite strand 240/240
(100 %)
0 diff
(100 %id)
BF873343 lung_tumor .e 2299 to 2540 286 to 45     Submitted on the opposite strand 242/286
(84 %)
0 diff
(100 %id)
BF873344 lung_tumor .e 2299 to 2538 240 to 1     Submitted on the opposite strand 240/240
(100 %)
0 diff
(100 %id)
BQ320675 colon .e 2403 to 2619 1 to 214       214/220
(97 %)
13 diff
(94.1 %id)
CB306616 lung, Primary Lung Cystic Fibrosis EpithelialCells .e 2448 to 3119 689 to 19   tiling clone, AAA   671/675
(99 %)
1 diff
(99.9 %id)
CK299353 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 2543 to 3119 588 to 15   AAA   574/586
(97 %)
14 diff
(97.7 %id)
TI_151731441   .e 2543 to 3119 709 to 136   AAA   574/877
(65 %)
14 diff
(98.5 %id)
AA007463 liver and spleen .e 2550 to 2806 1 to 258   fully sequenced,   258/258
(100 %)
1 diff
(99.7 %id)
AA604701   .e 2633 to 2969 1 to 337       337/357
(94 %)
6 diff
(98.4 %id)
BF224390 Kidney .e 2633 to 3119 502 to 16   AAA   487/487
(100 %)
0 diff
(100 %id)
BU741613 eye, fetal eye .e 2664 to 3119 475 to 19   fully sequenced, AAA   457/457
(100 %)
0 diff
(100 %id)
CD671723 eye, Iris .e 2724 to 3121 434 to 37   tiling clone, AAA   398/413
(96 %)
0 diff
(100 %id)
R65814 placenta .e 2746 to 3119 379 to 1       379/382
(99 %)
13 diff
(96.6 %id)
AA007367 liver and spleen .e 2776 to 3119 346 to 1   fully sequenced,   346/346
(100 %)
0 diff
(100 %id)
BE049641 adenocarcinoma, Pancreas .e 2784 to 3119 350 to 14   AAA   337/337
(100 %)
1 diff
(99.8 %id)
BF436293 pooled .e 2784 to 3119 336 to 1       336/336
(100 %)
1 diff
(99.8 %id)
AW016521   .e 2791 to 3119 346 to 18   AAA   329/329
(100 %)
0 diff
(100 %id)
AI521334 adenocarcinoma, Pancreas .e 2828 to 3119 317 to 26   AAA   292/292
(100 %)
4 diff
(98.7 %id)
AI565386 Kidney .e 2867 to 3119 265 to 12   AAA   254/254
(100 %)
2 diff
(99.3 %id)
BU507932 leiomyosarcoma, uterus .e 2885 to 3119 1 to 235   AAA   235/235
(100 %)
0 diff
(100 %id)
EC500046 Prostate .e 2887 to 3003 1 to 117       117/117
(100 %)
0 diff
(100 %id)
CD671714 eye, Iris .e 2922 to 3121 235 to 36   AAA   200/215
(93 %)
0 diff
(100 %id)
AI867506 Prostate .e 2962 to 3119 191 to 34   AAA   158/158
(100 %)
6 diff
(96.3 %id)
BE885200 leiomyosarcoma, uterus .f 1 to 1226 1 to 668 exact tiling clone, Suspected internal deletion 668/763
(87 %)
13 diff
(98.3 %id)
DA223751 brain .g-u 1 to 525 2 to 526   tiling clone, capped   525/525
(100 %)
1 diff
(99.9 %id)
DA204788 brain .g-u 52 to 617 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
DB094114 testis .g-u 415 to 962 2 to 549 exact tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
DA727340   .h 1 to 581 2 to 582 exact tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
DB220407 trachea .h 12 to 582 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DA620732   .i 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
CV404746 prostate_tumor .j-u 1 to 539 1 to 537 G53X G75E tiling clone,   537/546
(98 %)
5 diff
(99.1 %id)
CV404751 prostate_tumor .j-u 1 to 539 1 to 538 G75E tiling clone,   538/547
(98 %)
4 diff
(99.3 %id)
AK056918 Prostate Gene FAM109A, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK299344   Gene FAM109A, variant not shown         This clone was ignored    
BX435432 brain, fetal brain Gene FAM109A, variant not shown         This clone was ignored    
BX442117 brain, fetal brain Gene FAM109A, variant not shown         This clone was ignored    
BC018996 Pancreas, epithelioid carcinoma Gene FAM109A, variant not shown       available from MGC, This clone was ignored    
BC014091 Uterus, leiomyosarcoma Gene FAM109A, variant not shown       available from MGC, This clone was ignored    
BF971961 leiomyosarcoma cell line, uterus Gene FAM109A, variant not shown       available from MGC, This clone was ignored    
DA871472 Prostate Gene FAM109A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB329943 Prostate Gene FAM109A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C