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Gene C1orf83TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
101 supporting clones for gene C1orf83 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB275860 uterus .a 1 to 583 2 to 584   tiling clone, capped   583/583
(100 %)
1 diff
(99.9 %id)
BM713619 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 496 to 906 1 to 411   fully sequenced, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 411/411
(100 %)
1 diff
(99.8 %id)
BM714872 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 496 to 1179 1 to 684   tiling clone, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 684/684
(100 %)
0 diff
(100 %id)
BU739633 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 876 to 1611 748 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 730/730
(100 %)
10 diff
(98.7 %id)
BM675385 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1264 to 1611 366 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 348/348
(100 %)
0 diff
(100 %id)
DR003644 hippocampus .b -11 to 600 1 to 612       612/612
(100 %)
5 diff
(99.2 %id)
AK056674 brain .b 1 to 4089 9 to 4097 exact tiling clone, available from FLJ,   4097/4097
(100 %)
4 diff
(100.0 %id)
NM_153035.1   .b 1 to 4089 9 to 4097 exact RefSeq,   4097/4097
(100 %)
4 diff
(100.0 %id)
DA695213   .b 1 to 551 9 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA769202 brain .b 1 to 534 9 to 546   capped   545/545
(100 %)
4 diff
(99.3 %id)
DR003178 fetal brain .b 1 to 691 4 to 693       693/693
(100 %)
4 diff
(99.5 %id)
DB093541 testis .b 1 to 565 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
CD688691 normal nasopharynx .b 11 to 496 16 to 502       487/502
(97 %)
6 diff
(98.9 %id)
T18976   .b 11 to 389 1 to 386       386/387
(99 %)
14 diff
(96.4 %id)
BP271226 small intestine .b 20 to 601 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
DA416299 thalamus .b 27 to 580 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA868114 Prostate .b 30 to 570 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BI909833 leukocyte .b 39 to 726 1 to 688       688/688
(100 %)
1 diff
(99.9 %id)
TI_57237969   .b 39 to 726 31 to 718       688/718
(95 %)
6 diff
(99.2 %id)
BX443734 T cells (Jurkat cell line) .b 41 to 799 1 to 759       759/759
(100 %)
2 diff
(99.8 %id)
CR592771 HeLa cells Cot 25-normalized .b 50 to 1605 1 to 1556 exact     1556/1556
(100 %)
0 diff
(100 %id)
AL555802 placenta .b 50 to 833 1 to 782 K77X E153D fully sequenced,   782/782
(100 %)
3 diff
(99.7 %id)
TI_57198804   .b 59 to 931 35 to 910 H184A R185P A186S E187*     876/914
(95 %)
19 diff
(98.0 %id)
BC035374 Brain, Lung, Testis, adult, pooled whole .b 60 to 1636 1 to 1577 exact available from MGC, AAA   1577/1577
(100 %)
1 diff
(100.0 %id)
AW502783 lymph .b 60 to 474 7 to 421       415/421
(98 %)
6 diff
(98.6 %id)
BI822706 pooled brain, lung, testis .b 60 to 931 1 to 875 H184A R185P A186S E187*     875/879
(99 %)
13 diff
(98.6 %id)
TI_154158407   .b 60 to 593 82 to 614       533/534
(99 %)
7 diff
(98.7 %id)
DA615776   .b 65 to 646 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BM548881 duodenal adenocarcinoma, cell line, small intestine .b 71 to 950 1 to 887 K146X N154X P170A A177S R189G     887/1048
(84 %)
28 diff
(97.4 %id)
DB289469 uterus .b 71 to 617 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BI765716 pooled colon, kidney, stomach .b 76 to 553 34 to 511       478/514
(92 %)
7 diff
(98.7 %id)
TI_57149113   .b 76 to 553 34 to 511       478/514
(92 %)
7 diff
(98.7 %id)
DA225796 brain .b 151 to 514 178 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA316520 hippocampus .b 151 to 532 167 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA316880 hippocampus .b 151 to 200 203 to 253   capped   245/252
(97 %)
10 diff
(96.1 %id)
DA335847 hippocampus .b 151 to 557 182 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
AL704652 human skeletal muscle .b 151 to 274 184 to 308       308/309
(99 %)
9 diff
(97.1 %id)
BX489415   .b 151 to 689 189 to 732     Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 732/732
(100 %)
7 diff
(99.1 %id)
DA760038   .b 151 to 508 188 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
CV030238 mixed .b 193 to 813 1 to 621       621/621
(100 %)
0 diff
(100 %id)
TI_1948089965   .b 193 to 623 127 to 557       431/458
(94 %)
6 diff
(98.7 %id)
TI_1948090216   .b 193 to 821 134 to 763 F160V H184P A190G Q191S V192G ...     630/1412
(44 %)
16 diff
(98.9 %id)
TI_1948090343   .b 193 to 618 141 to 566       426/473
(90 %)
12 diff
(97.5 %id)
TI_1948090085   .b 195 to 821 141 to 769       629/1210
(51 %)
19 diff
(98.5 %id)
DB070039 testis .b 240 to 761 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
CB047610 Kidney .b 276 to 879 3 to 606     Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 604/606
(99 %)
7 diff
(98.9 %id)
DB278026 uterus .b 325 to 871 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BX097476 brain, glioblastoma (pooled) .b 395 to 870 1 to 476       476/476
(100 %)
0 diff
(100 %id)
AL578216 placenta .b 803 to 1589 800 to 16   fully sequenced,   785/800
(98 %)
6 diff
(99.3 %id)
BU619581 Cell Line, Chondrosarcoma .b 836 to 1442 32 to 638     Submitted on the opposite strand 607/638
(95 %)
6 diff
(99.1 %id)
BE858049 brain, glioblastoma (pooled) .b 1011 to 1525 515 to 1       515/515
(100 %)
0 diff
(100 %id)
BU632349 cell lines, Chondrosarcoma .b 1041 to 1636 614 to 19   AAA   596/596
(100 %)
2 diff
(99.7 %id)
BF940104 brain, glioblastoma (pooled) .b 1060 to 1525 467 to 1       467/467
(100 %)
6 diff
(98.8 %id)
DB191854 ovary, tumor tissue .b 1088 to 1635 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
FN057734 breast carcinoma .b 1115 to 1221 107 to 1     Submitted on the opposite strand 107/107
(100 %)
1 diff
(99.1 %id)
CN371429 embryonic stem cells, DMSO-treated H9 cellline .b 1121 to 1632 1 to 512       512/512
(100 %)
0 diff
(100 %id)
AL049253 brain .b 1126 to 1636 4 to 514   available from DKFZ, AAA   511/511
(100 %)
0 diff
(100 %id)
CN371430 embryonic stem cells, cell lines H1, H7, andH9 .b 1164 to 1388 1 to 225       225/225
(100 %)
0 diff
(100 %id)
CB047609 Kidney .b 1182 to 1860 702 to 24   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 679/679
(100 %)
2 diff
(99.8 %id)
BF056377 pooled germ cell tumors .b 1187 to 1636 462 to 13   AAA   450/450
(100 %)
13 diff
(97.2 %id)
AI418167 brain, glioblastoma (pooled) .b 1189 to 1525 336 to 1       336/336
(100 %)
2 diff
(99.5 %id)
AA495833 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1216 to 1636 421 to 1       421/421
(100 %)
2 diff
(99.6 %id)
AW594743 pooled germ cell tumors .b 1263 to 1636 388 to 15   AAA   374/374
(100 %)
3 diff
(99.2 %id)
FN093495 breast carcinoma .b 1511 to 1620 1 to 106       106/106
(100 %)
4 diff
(96.3 %id)
AW296068   .b 1621 to 1824 8 to 211     Submitted on the opposite strand 204/391
(52 %)
4 diff
(99.0 %id)
DB105404 thymus .b 1624 to 2178 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
CB146767 Liver .b 1646 to 2282 1 to 637   tiling clone,   637/637
(100 %)
3 diff
(99.6 %id)
DA599780   .b 2186 to 2743 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB342841 thymus .b 3517 to 4089 573 to 1       573/573
(100 %)
6 diff
(99.0 %id)
DB319941   .b 3545 to 4095 552 to 2       551/552
(99 %)
0 diff
(100 %id)
DB325643 brain .b 3547 to 4089 543 to 1       543/543
(100 %)
0 diff
(100 %id)
BX489416   .b 4054 to 4618 582 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 564/564
(100 %)
3 diff
(99.5 %id)
BM470298 eye, retinoblastoma .c 1 to 736 45 to 786   tiling clone,   742/1049
(70 %)
21 diff
(98.0 %id)
BQ435649 testis .c 540 to 1273 1 to 744   tiling clone,   744/792
(93 %)
23 diff
(97.1 %id)
DA510373 brain .d-u 1 to 555 2 to 556 S143F tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
DR980522 placenta .d-u 204 to 323 119 to 1       119/126
(94 %)
3 diff
(97.7 %id)
BP430743   .e 1 to 380 1 to 380 exact tiling clone,   380/380
(100 %)
0 diff
(100 %id)
DA662646   .f-u 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
AA216560 brain, neuroepithelial cells .f-u 134 to 499 1 to 366       366/366
(100 %)
3 diff
(99.2 %id)
R11538 liver and spleen .f-u 232 to 610 1 to 395       395/402
(98 %)
20 diff
(95.1 %id)
BP284582 bone marrow .f-u 537 to 1124 1 to 588   tiling clone,   588/588
(100 %)
0 diff
(100 %id)
BG757333 B-cells, primary B-cells from tonsils (cell line) .f-u 582 to 1087 1 to 515       515/963
(53 %)
18 diff
(98.2 %id)
BM768878 stomach .f-u 940 to 1596 1 to 657   tiling clone,   657/657
(100 %)
0 diff
(100 %id)
BM769574 stomach .f-u 940 to 1578 1 to 639       639/639
(100 %)
6 diff
(99.1 %id)
BM850295 stomach .f-u 940 to 1470 1 to 531       531/531
(100 %)
2 diff
(99.7 %id)
BM855705 stomach .f-u 940 to 1365 1 to 426       426/426
(100 %)
5 diff
(98.9 %id)
BQ082987 stomach .f-u 940 to 1528 1 to 589       589/589
(100 %)
0 diff
(100 %id)
BQ084332 stomach .f-u 940 to 1252 1 to 313       313/313
(100 %)
1 diff
(99.7 %id)
BE904917 epithelioid carcinoma, Pancreas .f-u 952 to 1592 1 to 639       639/640
(99 %)
13 diff
(98.0 %id)
BQ343473 nervous_tumor .f-u 1042 to 1328 8 to 295       288/295
(97 %)
6 diff
(98.0 %id)
BG951849 colon .f-u 1046 to 1522 1 to 480       480/480
(100 %)
20 diff
(95.9 %id)
BG951033 colon .f-u 1276 to 1757 489 to 1       489/489
(100 %)
0 diff
(100 %id)
BI052354 placenta_normal .f-u 1369 to 1803 435 to 4       432/435
(99 %)
0 diff
(100 %id)
R19263 liver and spleen .f-u 1418 to 1830 428 to 1   tiling clone,   428/430
(99 %)
27 diff
(93.8 %id)
BU941766 mixed (pool of 40 RNAs) .f-u 1443 to 1831 1 to 389   tiling clone,   389/389
(100 %)
3 diff
(99.3 %id)
BQ343863 nervous_tumor .f-u 1503 to 1682 179 to 1       179/189
(94 %)
6 diff
(96.9 %id)
BQ278286 mixed (pool of 40 RNAs) .f-u 1530 to 1860 1 to 328   tiling clone,   328/334
(98 %)
7 diff
(98.0 %id)
BQ719936 sympathetic trunk .f-u 2106 to 2860 1 to 767   tiling clone,   767/872
(87 %)
25 diff
(97.2 %id)
BF854836 prostate_normal .f-u 2445 to 2787 342 to 1   tiling clone, Submitted on the opposite strand 342/353
(96 %)
10 diff
(97.2 %id)
AK096488 brain .g 151 to 2516 173 to 2538 H74R tiling clone, available from FLJ,   2538/2538
(100 %)
1 diff
(100.0 %id)
DA770328 brain .g 151 to 548 173 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA766555 tongue .g 326 to 887 2 to 564   tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
AA495777.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 408 to 859 1 to 452     also hits gene RBM33 452/452
(100 %)
2 diff
(99.6 %id)
BF352453 head_neck .g 499 to 914 10 to 425       416/425
(97 %)
6 diff
(98.6 %id)
DB325704 brain .g 1986 to 2516 531 to 1       531/531
(100 %)
0 diff
(100 %id)
AW303060 invasive adenocarcinoma, lung .h-u 1 to 297 309 to 13 exact tiling clone,   297/326
(91 %)
0 diff
(100 %id)
DW433986 Liver .i 151 to 219 191 to 260 P28L tiling clone,   245/260
(94 %)
7 diff
(97.4 %id)
AV728976 hypothalamus Gene C1orf83, variant not shown         Suspected internal deletion, this clone was ignored    
FN149407 breast carcinoma Gene C1orf83, variant not shown              
AW014131   Gene C1orf83, variant not shown       AAA This clone was ignored    
BE466904 pooled germ cell tumors Gene C1orf83, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f-u, .g, .h-u, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C